Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99632 * 2 1 4 4 H 1.48501 * 109.47203 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.47445 * 29.99730 * 3 2 1 6 6 H 1.48492 * 109.47293 * 149.99925 * 3 2 1 7 7 C 1.37872 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99929 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99932 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47028 * 180.02562 * 11 10 9 13 13 S 1.81405 * 109.47043 * 180.02562 * 12 11 10 14 14 O 1.42096 * 108.58166 * 65.51225 * 13 12 11 15 15 O 1.42101 * 108.57720 * 294.48442 * 13 12 11 16 16 C 1.81405 * 101.91875 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.47001 * 180.02562 * 16 13 12 18 18 C 1.38423 * 122.53613 * 270.00176 * 17 16 13 19 19 C 1.33390 * 114.91977 * 180.02562 * 18 17 16 20 20 S 1.75887 * 109.59565 * 359.75483 * 19 18 17 21 21 C 1.33391 * 122.54338 * 90.02203 * 17 16 13 22 22 H 0.96994 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46917 * 60.00182 * 9 7 2 24 24 H 1.08995 * 109.47583 * 300.00531 * 9 7 2 25 25 H 1.09007 * 109.47043 * 59.99901 * 11 10 9 26 26 H 1.09003 * 109.47441 * 300.00235 * 11 10 9 27 27 H 1.08989 * 109.47334 * 60.00097 * 12 11 10 28 28 H 1.08998 * 109.46936 * 299.99611 * 12 11 10 29 29 H 1.08994 * 109.47283 * 60.00115 * 16 13 12 30 30 H 1.09003 * 109.46791 * 299.99608 * 16 13 12 31 31 H 1.08001 * 122.53963 * 0.04211 * 18 17 16 32 32 H 1.07998 * 125.20164 * 180.02562 * 19 18 17 33 33 H 1.08002 * 125.19887 * 359.95301 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1799 -3.5852 -0.0005 11 6 1.5654 -4.8753 -0.0011 12 6 2.6484 -5.9560 -0.0004 13 16 1.8683 -7.5938 -0.0019 14 8 1.1709 -7.7620 -1.2285 15 8 1.1684 -7.7630 1.2231 16 6 3.3097 -8.6953 -0.0001 17 6 2.8461 -10.1292 -0.0017 18 6 2.6150 -10.8382 1.1645 19 6 2.2090 -12.0963 0.9863 20 16 2.0935 -12.4407 -0.7347 21 6 2.6277 -10.8114 -1.1269 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 0.9455 -4.9821 -0.8914 26 1 0.9449 -4.9827 0.8886 27 1 3.2678 -5.8491 0.8899 28 1 3.2691 -5.8489 -0.8900 29 1 3.9091 -8.5079 0.8908 30 1 3.9116 -8.5074 -0.8892 31 1 2.7526 -10.4055 2.1444 32 1 1.9815 -12.7951 1.7776 33 1 2.7549 -10.4215 -2.1260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899979741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -85.256017 kcal Electronic energy + Delta-G solvation = -17994.509429 eV Core-core repulsion = 14853.779939 eV Total energy + Delta-G solvation = -3140.729489 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.048 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.67266 -37.01711 -37.00126 -36.03322 -32.94847 -31.64067 -31.32137 -28.32760 -27.13650 -23.82511 -22.86232 -22.30316 -19.33790 -18.90491 -18.07157 -17.08328 -16.59187 -16.37404 -16.06262 -15.54017 -15.14322 -14.98934 -14.38354 -13.77332 -13.59822 -13.46771 -13.36857 -13.03581 -12.78608 -12.41897 -12.14870 -12.08011 -12.01524 -11.33417 -11.29550 -11.20723 -11.04260 -10.87987 -10.82142 -10.65722 -10.11515 -9.20220 -9.16885 -8.95783 -8.74092 -8.28592 -6.15601 -4.18501 -0.26956 0.66594 1.26064 1.58330 2.28977 2.66268 3.27603 3.32551 3.37215 3.46964 3.85400 4.22553 4.31232 4.43700 4.58960 4.68863 4.91031 4.98506 5.11718 5.20707 5.25249 5.32827 5.53795 5.61819 5.84962 5.91614 5.95762 5.99050 7.00494 7.34022 7.72116 8.06098 8.42288 8.92754 9.46257 10.95877 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.061249 B = 0.002621 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.038418 B =10681.653341 C =10711.861889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.190 3.810 10 O -0.387 6.387 11 C 0.075 3.925 12 C -0.608 4.608 13 S 2.418 3.582 14 O -0.930 6.930 15 O -0.929 6.929 16 C -0.548 4.548 17 C -0.106 4.106 18 C -0.126 4.126 19 C -0.211 4.211 20 S 0.116 5.884 21 C -0.193 4.193 22 H 0.265 0.735 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.170 0.830 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 -24.897 0.010 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.116 3.884 10 O -0.307 6.307 11 C -0.004 4.004 12 C -0.737 4.737 13 S 2.599 3.401 14 O -0.927 6.927 15 O -0.926 6.926 16 C -0.677 4.677 17 C -0.120 4.120 18 C -0.156 4.156 19 C -0.346 4.346 20 S 0.380 5.620 21 C -0.331 4.331 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.858 -26.236 -0.828 26.895 hybrid contribution 1.433 2.330 0.822 2.856 sum 7.291 -23.906 -0.006 24.994 Atomic orbital electron populations 1.69961 1.06121 1.27353 1.50085 1.24967 0.95021 0.99513 0.95006 0.86294 0.79596 0.82072 0.78266 1.20401 1.20995 1.19627 1.21014 0.94072 0.89157 1.51426 0.91446 1.20343 0.88864 0.83236 0.95981 1.87886 1.35361 1.12163 1.95299 1.21761 0.92016 0.85618 1.01004 1.30417 1.12434 1.18472 1.12400 1.08282 0.77983 0.78034 0.75767 1.93582 1.68712 1.84932 1.45498 1.93584 1.68640 1.84871 1.45534 1.29100 1.20461 1.05583 1.12591 1.17991 1.06177 0.94637 0.93182 1.20164 1.02065 0.93875 0.99508 1.25647 1.08999 1.00736 0.99250 1.84320 1.65364 1.11586 1.00739 1.25731 1.06906 0.97671 1.02762 0.92493 0.97184 0.97176 0.92682 0.92674 0.84357 0.84393 0.83732 0.83893 0.83232 0.81246 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.52 -15.23 9.43 -34.44 -0.32 -15.55 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.24 5.69 36.00 0.20 5.44 16 10 O -0.39 -9.28 10.33 -35.23 -0.36 -9.64 16 11 C 0.07 1.40 5.95 37.16 0.22 1.62 16 12 C -0.61 -7.76 6.18 37.16 0.23 -7.53 16 13 S 2.42 29.11 4.70 -107.50 -0.51 28.61 16 14 O -0.93 -14.10 18.10 -57.83 -1.05 -15.14 16 15 O -0.93 -14.12 18.10 -57.83 -1.05 -15.17 16 16 C -0.55 -4.28 6.06 36.01 0.22 -4.07 16 17 C -0.11 -1.02 5.06 -106.25 -0.54 -1.56 16 18 C -0.13 -1.16 9.98 -41.21 -0.41 -1.58 16 19 C -0.21 -1.71 11.23 29.04 0.33 -1.39 16 20 S 0.12 0.94 23.34 -107.50 -2.51 -1.57 16 21 C -0.19 -1.78 10.98 29.04 0.32 -1.46 16 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.14 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.14 1.46 8.14 -51.92 -0.42 1.04 16 29 H 0.14 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.14 0.73 8.12 -51.92 -0.42 0.30 16 31 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -36.99 320.11 -8.98 -45.97 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -4.19 Total: -3.92 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 0.15 Total: -24.54 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -2.46 Total: -39.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 30.05 SS G_CDS: -3.01 Total: 27.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.99 -8.98 -45.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899979741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.286 kcal (2) G-P(sol) polarization free energy of solvation -36.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds