Wall clock time and date at job start Tue Mar 31 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99632 * 2 1 4 4 H 1.48501 * 109.47203 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.47445 * 29.99730 * 3 2 1 6 6 H 1.48492 * 109.47293 * 149.99925 * 3 2 1 7 7 C 1.37872 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99929 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99932 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47028 * 180.02562 * 11 10 9 13 13 S 1.81405 * 109.47043 * 180.02562 * 12 11 10 14 14 O 1.42096 * 108.58166 * 65.51225 * 13 12 11 15 15 O 1.42101 * 108.57720 * 294.48442 * 13 12 11 16 16 C 1.81405 * 101.91875 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.47001 * 180.02562 * 16 13 12 18 18 C 1.38423 * 122.53613 * 270.00176 * 17 16 13 19 19 C 1.33390 * 114.91977 * 180.02562 * 18 17 16 20 20 S 1.75887 * 109.59565 * 359.75483 * 19 18 17 21 21 C 1.33391 * 122.54338 * 90.02203 * 17 16 13 22 22 H 0.96994 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46917 * 60.00182 * 9 7 2 24 24 H 1.08995 * 109.47583 * 300.00531 * 9 7 2 25 25 H 1.09007 * 109.47043 * 59.99901 * 11 10 9 26 26 H 1.09003 * 109.47441 * 300.00235 * 11 10 9 27 27 H 1.08989 * 109.47334 * 60.00097 * 12 11 10 28 28 H 1.08998 * 109.46936 * 299.99611 * 12 11 10 29 29 H 1.08994 * 109.47283 * 60.00115 * 16 13 12 30 30 H 1.09003 * 109.46791 * 299.99608 * 16 13 12 31 31 H 1.08001 * 122.53963 * 0.04211 * 18 17 16 32 32 H 1.07998 * 125.20164 * 180.02562 * 19 18 17 33 33 H 1.08002 * 125.19887 * 359.95301 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1799 -3.5852 -0.0005 11 6 1.5654 -4.8753 -0.0011 12 6 2.6484 -5.9560 -0.0004 13 16 1.8683 -7.5938 -0.0019 14 8 1.1709 -7.7620 -1.2285 15 8 1.1684 -7.7630 1.2231 16 6 3.3097 -8.6953 -0.0001 17 6 2.8461 -10.1292 -0.0017 18 6 2.6150 -10.8382 1.1645 19 6 2.2090 -12.0963 0.9863 20 16 2.0935 -12.4407 -0.7347 21 6 2.6277 -10.8114 -1.1269 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 0.9455 -4.9821 -0.8914 26 1 0.9449 -4.9827 0.8886 27 1 3.2678 -5.8491 0.8899 28 1 3.2691 -5.8489 -0.8900 29 1 3.9091 -8.5079 0.8908 30 1 3.9116 -8.5074 -0.8892 31 1 2.7526 -10.4055 2.1444 32 1 1.9815 -12.7951 1.7776 33 1 2.7549 -10.4215 -2.1260 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899979741.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:47 Heat of formation + Delta-G solvation = -112.946174 kcal Electronic energy + Delta-G solvation = -17995.710164 eV Core-core repulsion = 14853.779939 eV Total energy + Delta-G solvation = -3141.930225 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.048 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.30913 -38.82165 -38.07115 -37.08876 -35.06849 -32.82567 -32.22590 -29.32885 -28.92552 -24.95104 -24.46518 -23.77825 -20.12650 -19.74906 -18.78459 -18.64453 -18.24121 -17.49779 -17.20218 -16.85588 -16.57005 -16.32630 -15.98369 -15.23955 -14.60093 -14.37206 -14.19317 -14.02291 -13.99602 -13.41701 -13.22946 -13.11873 -13.04187 -12.97798 -12.91352 -12.66377 -12.55777 -12.16154 -12.09308 -11.87300 -11.68996 -11.32854 -10.95774 -10.38199 -9.81954 -9.39509 -8.35314 -6.49308 -1.20406 0.02209 0.64049 0.95826 1.40017 1.43334 1.55394 1.60631 1.79308 2.30855 2.50429 2.98656 3.01214 3.16690 3.57346 3.72611 3.73778 3.88562 4.13738 4.21102 4.43093 4.48653 4.54955 4.66812 4.68482 4.86412 4.99885 5.07826 5.28646 5.35749 5.50226 5.88117 6.38791 6.71155 7.22362 8.77328 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.061249 B = 0.002621 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.038418 B =10681.653341 C =10711.861889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.551 4.551 8 H 0.068 0.932 9 C 0.199 3.801 10 O -0.396 6.396 11 C 0.053 3.947 12 C -0.605 4.605 13 S 2.418 3.582 14 O -0.971 6.971 15 O -0.970 6.970 16 C -0.516 4.516 17 C -0.127 4.127 18 C -0.147 4.147 19 C -0.214 4.214 20 S 0.125 5.875 21 C -0.207 4.207 22 H 0.272 0.728 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.180 0.820 30 H 0.179 0.821 31 H 0.161 0.839 32 H 0.192 0.808 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.447 -25.380 0.071 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.589 4.589 8 H 0.086 0.914 9 C 0.124 3.876 10 O -0.316 6.316 11 C -0.025 4.025 12 C -0.733 4.733 13 S 2.604 3.396 14 O -0.968 6.968 15 O -0.967 6.967 16 C -0.650 4.650 17 C -0.142 4.142 18 C -0.177 4.177 19 C -0.349 4.349 20 S 0.389 5.611 21 C -0.345 4.345 22 H 0.081 0.919 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.182 0.818 28 H 0.181 0.819 29 H 0.198 0.802 30 H 0.197 0.803 31 H 0.178 0.822 32 H 0.209 0.791 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.129 -26.701 -0.767 27.922 hybrid contribution 0.696 2.263 0.794 2.497 sum 8.825 -24.438 0.027 25.982 Atomic orbital electron populations 1.70079 1.07933 1.28881 1.50155 1.26054 0.96016 1.03678 0.93732 0.85096 0.78332 0.76535 0.78910 1.19174 1.19984 1.18550 1.21374 0.94336 0.90418 1.52749 0.91392 1.20010 0.88910 0.84659 0.94045 1.87826 1.35028 1.13426 1.95277 1.22122 0.94611 0.84891 1.00852 1.30431 1.11155 1.16691 1.15012 1.08110 0.79324 0.78020 0.74115 1.93527 1.71284 1.85329 1.46642 1.93529 1.71229 1.85270 1.46692 1.28850 1.17263 1.02533 1.16320 1.18267 1.07063 0.95395 0.93480 1.20450 1.02709 0.94447 1.00080 1.26020 1.08094 1.00997 0.99811 1.84299 1.64753 1.11109 1.00935 1.26093 1.06573 0.98296 1.03534 0.91898 0.99195 0.99187 0.92994 0.92990 0.81841 0.81861 0.80199 0.80295 0.82155 0.79091 0.79530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.99 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.55 -32.89 9.43 25.60 0.24 -32.65 16 8 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 9 C 0.20 11.40 5.69 71.23 0.41 11.81 16 10 O -0.40 -19.36 10.33 -148.98 -1.54 -20.90 16 11 C 0.05 2.04 5.95 71.98 0.43 2.47 16 12 C -0.61 -14.60 6.18 71.98 0.44 -14.16 16 13 S 2.42 55.90 4.70 -56.49 -0.27 55.63 16 14 O -0.97 -29.48 18.10 -127.37 -2.31 -31.79 16 15 O -0.97 -29.56 18.10 -127.37 -2.30 -31.86 16 16 C -0.52 -6.30 6.06 71.24 0.43 -5.87 16 17 C -0.13 -2.16 5.06 -20.92 -0.11 -2.26 16 18 C -0.15 -2.42 9.98 21.22 0.21 -2.21 16 19 C -0.21 -3.08 11.23 66.72 0.75 -2.33 16 20 S 0.13 1.83 23.34 -56.49 -1.32 0.51 16 21 C -0.21 -3.40 10.98 66.72 0.73 -2.67 16 22 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 23 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 24 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.16 3.06 8.14 -2.40 -0.02 3.04 16 28 H 0.16 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.18 1.00 8.13 -2.39 -0.02 0.98 16 30 H 0.18 0.97 8.12 -2.39 -0.02 0.95 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 32 H 0.19 1.71 8.06 -2.91 -0.02 1.68 16 33 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -82.22 320.11 -0.32 -82.54 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: 1.10 Total: 3.20 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 4.00 Total: -47.19 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -78.40 SS G_CDS: -6.15 Total: -84.55 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 57.73 SS G_CDS: -1.58 Total: 56.14 kcal Total: -82.22 -0.32 -82.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899979741.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.404 kcal (2) G-P(sol) polarization free energy of solvation -82.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds