Wall clock time and date at job start Tue Mar 31 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47466 * 2 1 4 4 C 1.50703 * 109.46924 * 120.00323 * 2 1 3 5 5 C 1.38261 * 119.96263 * 239.99776 * 4 2 1 6 6 C 1.38213 * 120.06940 * 180.02562 * 5 4 2 7 7 C 1.38409 * 119.99951 * 0.02562 * 6 5 4 8 8 F 1.35096 * 120.03335 * 180.02562 * 7 6 5 9 9 C 1.38649 * 119.92968 * 359.97438 * 7 6 5 10 10 F 1.35107 * 120.03152 * 180.02562 * 9 7 6 11 11 C 1.38213 * 119.96589 * 59.72439 * 4 2 1 12 12 S 1.81400 * 109.47120 * 239.99879 * 2 1 3 13 13 O 1.42105 * 108.57777 * 305.51682 * 12 2 1 14 14 O 1.42097 * 108.58116 * 174.48853 * 12 2 1 15 15 C 1.81400 * 101.91926 * 59.99972 * 12 2 1 16 16 C 1.50706 * 109.47256 * 179.97438 * 15 12 2 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 12 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 12 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99848 * 20 18 16 23 23 H 1.48501 * 109.47057 * 239.99829 * 20 18 16 24 24 H 1.08998 * 109.47216 * 59.99809 * 1 2 3 25 25 H 1.08996 * 109.47466 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47300 * 299.99823 * 1 2 3 27 27 H 1.07995 * 119.96295 * 359.97316 * 5 4 2 28 28 H 1.08003 * 119.99764 * 179.97438 * 6 5 4 29 29 H 1.07992 * 119.99810 * 359.97438 * 11 4 2 30 30 H 1.09001 * 109.46713 * 60.00236 * 15 12 2 31 31 H 1.09000 * 109.47712 * 300.00545 * 15 12 2 32 32 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 2.8271 -0.0379 2.1401 6 6 3.2894 -0.6875 3.2690 7 6 2.9572 -2.0129 3.4897 8 9 3.4083 -2.6484 4.5932 9 6 2.1601 -2.6874 2.5775 10 9 1.8341 -3.9810 2.7910 11 6 1.6932 -2.0321 1.4513 12 16 2.1346 -0.8552 -1.4811 13 8 1.5477 -2.1485 -1.5284 14 8 3.5495 -0.7331 -1.5285 15 6 1.4228 0.1515 -2.8118 16 6 1.8279 -0.4204 -4.1460 17 1 2.4509 -1.3015 -4.1890 18 6 1.4032 0.1812 -5.3115 19 7 0.6450 1.2546 -5.2590 20 14 1.9048 -0.5280 -6.9652 21 1 2.7533 -1.7280 -6.7523 22 1 0.6900 -0.9094 -7.7293 23 1 2.6705 0.4899 -7.7287 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.0877 0.9959 1.9678 28 1 3.9106 -0.1611 3.9786 29 1 1.0683 -2.5549 0.7425 30 1 1.7893 1.1746 -2.7290 31 1 0.3359 0.1471 -2.7291 32 1 0.3459 1.6776 -6.0791 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:59 Heat of formation + Delta-G solvation = -167.402351 kcal Electronic energy + Delta-G solvation = -20852.887503 eV Core-core repulsion = 17154.755495 eV Total energy + Delta-G solvation = -3698.132008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.60949 -49.68924 -40.43769 -37.84347 -36.85433 -35.45643 -35.26194 -31.97375 -31.21799 -30.09992 -25.61481 -25.52219 -24.28443 -22.80883 -19.74744 -19.17165 -18.90491 -18.50235 -18.11586 -17.51335 -17.30891 -17.07069 -16.69694 -16.14970 -16.10972 -15.65414 -15.47675 -15.13297 -14.73676 -14.43578 -14.09707 -13.80378 -13.76061 -13.58194 -13.35067 -12.99509 -12.90853 -12.84525 -12.74574 -12.53370 -12.44702 -12.35481 -11.74900 -11.53612 -10.87527 -10.75012 -10.20737 -9.75507 -8.39824 -6.54920 -0.89382 -0.19449 -0.13051 1.37341 1.39090 1.52330 2.10247 2.18921 2.31643 2.60560 2.80281 2.93933 3.14476 3.22394 3.27421 3.47977 3.84316 3.92056 3.96687 4.21577 4.51645 4.67247 4.73195 4.75312 4.78325 4.80769 4.84822 4.90998 5.13722 5.23570 5.38763 5.59493 5.77877 6.54217 7.15432 8.72420 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.034734 B = 0.004189 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.943842 B = 6682.895904 C = 6872.958207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.514 4.514 3 H 0.186 0.814 4 C -0.067 4.067 5 C -0.071 4.071 6 C -0.109 4.109 7 C 0.061 3.939 8 F -0.132 7.132 9 C 0.052 3.948 10 F -0.138 7.138 11 C -0.146 4.146 12 S 2.393 3.607 13 O -0.981 6.981 14 O -0.988 6.988 15 C -0.418 4.418 16 C -0.564 4.564 17 H 0.055 0.945 18 C 0.030 3.970 19 N -0.904 5.904 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.266 1.266 23 H -0.266 1.266 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.186 0.814 28 H 0.190 0.810 29 H 0.151 0.849 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 2.088 16.594 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.624 4.624 3 H 0.203 0.797 4 C -0.069 4.069 5 C -0.090 4.090 6 C -0.127 4.127 7 C 0.040 3.960 8 F -0.111 7.111 9 C 0.032 3.968 10 F -0.117 7.117 11 C -0.165 4.165 12 S 2.583 3.417 13 O -0.978 6.978 14 O -0.985 6.985 15 C -0.551 4.551 16 C -0.602 4.602 17 H 0.073 0.927 18 C -0.174 4.174 19 N -0.541 5.541 20 Si 0.779 3.221 21 H -0.194 1.194 22 H -0.191 1.191 23 H -0.190 1.190 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.203 0.797 28 H 0.207 0.793 29 H 0.168 0.832 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.114 1.363 16.489 16.583 hybrid contribution -0.346 -0.372 -0.759 0.913 sum 0.768 0.990 15.731 15.780 Atomic orbital electron populations 1.21857 0.87456 1.04608 1.06381 1.29056 1.08287 1.14162 1.10889 0.79700 1.19117 0.99041 0.92625 0.96097 1.21529 0.93760 1.02436 0.91242 1.21508 1.00654 0.90821 0.99697 1.17968 0.99864 0.93057 0.85082 1.91516 1.87290 1.82172 1.50085 1.17756 1.02018 0.79800 0.97213 1.91502 1.91269 1.34110 1.94777 1.21394 1.02084 0.95859 0.97191 1.08750 0.75657 0.78059 0.79199 1.93417 1.79461 1.38281 1.86650 1.93427 1.30397 1.87861 1.86852 1.27580 1.08534 1.09508 1.09505 1.20766 1.34694 1.13828 0.90908 0.92656 1.25687 0.93985 0.94838 1.02855 1.69992 1.34179 1.19948 1.30009 0.85529 0.78930 0.78976 0.78671 1.19407 1.19096 1.19031 0.89552 0.91275 0.87287 0.79659 0.79295 0.83162 0.89199 0.88815 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.75 71.98 0.63 -2.56 16 2 C -0.51 -12.90 2.94 29.85 0.09 -12.82 16 3 H 0.19 3.18 7.87 -2.39 -0.02 3.16 16 4 C -0.07 -1.66 4.78 -19.86 -0.09 -1.75 16 5 C -0.07 -1.26 9.67 22.27 0.22 -1.04 16 6 C -0.11 -1.83 10.02 22.30 0.22 -1.61 16 7 C 0.06 1.43 7.31 22.41 0.16 1.59 16 8 F -0.13 -3.19 17.18 44.97 0.77 -2.42 16 9 C 0.05 1.47 7.31 22.41 0.16 1.63 16 10 F -0.14 -4.22 17.18 44.97 0.77 -3.45 16 11 C -0.15 -4.19 8.54 22.30 0.19 -4.00 16 12 S 2.39 94.82 4.00 -56.49 -0.23 94.59 16 13 O -0.98 -44.10 16.22 -127.37 -2.07 -46.17 16 14 O -0.99 -45.26 18.10 -127.37 -2.30 -47.56 16 15 C -0.42 -19.02 5.11 71.24 0.36 -18.66 16 16 C -0.56 -31.05 9.13 25.60 0.23 -30.82 16 17 H 0.06 3.12 7.71 -2.91 -0.02 3.10 16 18 C 0.03 1.60 5.46 84.65 0.46 2.06 16 19 N -0.90 -49.36 13.29 21.45 0.28 -49.08 16 20 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H 0.09 1.90 6.55 -2.39 -0.02 1.89 16 25 H 0.07 1.63 7.28 -2.39 -0.02 1.62 16 26 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.19 1.83 7.94 -2.91 -0.02 1.81 16 28 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.15 4.68 6.27 -2.91 -0.02 4.66 16 30 H 0.09 3.92 8.14 -2.39 -0.02 3.90 16 31 H 0.09 4.08 6.87 -2.39 -0.02 4.06 16 32 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.35 299.00 3.06 -69.29 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.16 Total: 8.38 kcal Atomic # 6 Polarization: -70.60 SS G_CDS: 2.64 Total: -67.97 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.28 Total: -49.08 kcal Atomic # 8 Polarization: -89.36 SS G_CDS: -4.37 Total: -93.73 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 1.55 Total: -5.87 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 94.82 SS G_CDS: -0.23 Total: 94.59 kcal Total: -72.35 3.06 -69.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.108 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds