Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00381 * 2 1 4 4 H 1.48494 * 109.46892 * 269.99862 * 3 2 1 5 5 H 1.48497 * 109.46845 * 29.99675 * 3 2 1 6 6 H 1.48498 * 109.47210 * 149.99324 * 3 2 1 7 7 C 1.38736 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00172 * 185.12368 * 9 7 2 11 11 C 1.39224 * 120.02059 * 265.25519 * 10 9 7 12 12 C 1.38136 * 120.20433 * 179.73865 * 11 10 9 13 13 C 1.38088 * 120.24277 * 0.56045 * 12 11 10 14 14 C 1.39642 * 120.03799 * 359.69830 * 13 12 11 15 15 C 1.47844 * 120.10163 * 180.02562 * 14 13 12 16 16 O 1.21577 * 119.99580 * 180.02562 * 15 14 13 17 17 N 1.34774 * 119.99742 * 0.02562 * 15 14 13 18 18 C 1.40633 * 119.99674 * 179.97438 * 17 15 14 19 19 C 1.41820 * 128.06063 * 359.68785 * 18 17 15 20 20 N 1.30169 * 106.37162 * 179.86645 * 19 18 17 21 21 O 1.20890 * 111.76118 * 0.41746 * 20 19 18 22 22 C 1.34279 * 111.63487 * 359.72304 * 21 20 19 23 23 C 1.38839 * 120.02036 * 85.53016 * 10 9 7 24 24 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.89598 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.88178 * 180.25561 * 12 11 10 27 27 H 1.08002 * 119.97732 * 179.71359 * 13 12 11 28 28 H 0.96993 * 120.00121 * 0.02562 * 17 15 14 29 29 H 1.07997 * 126.81101 * 359.97438 * 19 18 17 30 30 H 1.08005 * 126.81970 * 180.02562 * 22 21 20 31 31 H 1.08002 * 120.12032 * 0.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0099 -1.2015 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1563 11 6 3.0330 -4.4332 -0.9802 12 6 4.0900 -5.3148 -0.8629 13 6 4.5903 -5.6389 0.3827 14 6 4.0323 -5.0706 1.5297 15 6 4.5672 -5.4162 2.8639 16 8 4.0797 -4.9206 3.8613 17 7 5.5953 -6.2806 2.9744 18 6 6.1045 -6.6089 4.2436 19 6 5.6749 -6.1320 5.5082 20 7 6.4324 -6.7100 6.3950 21 8 7.2450 -7.4428 5.8811 22 6 7.1267 -7.4528 4.5436 23 6 2.9692 -4.1761 1.4128 24 1 -0.4850 0.8401 -0.0004 25 1 2.6431 -4.1870 -1.9569 26 1 4.5235 -5.7559 -1.7482 27 1 5.4138 -6.3322 0.4697 28 1 5.9845 -6.6756 2.1787 29 1 4.8764 -5.4300 5.6978 30 1 7.7248 -8.0192 3.8450 31 1 2.5332 -3.7339 2.2964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125693885.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = 33.500975 kcal Electronic energy + Delta-G solvation = -19065.091714 eV Core-core repulsion = 15826.360714 eV Total energy + Delta-G solvation = -3238.731000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.02262 -41.48614 -39.33693 -36.74222 -34.66774 -34.12528 -32.72764 -31.98162 -31.35424 -27.75838 -25.86849 -24.34644 -23.79925 -23.03843 -21.81419 -20.01636 -19.29139 -18.89619 -18.66033 -17.98456 -17.10940 -16.94700 -16.69184 -16.30416 -15.90087 -15.50246 -15.06974 -14.78075 -14.62084 -14.19198 -13.91698 -13.29273 -13.14161 -12.97755 -12.80681 -12.69332 -12.57077 -12.41946 -11.76972 -11.36833 -11.22224 -11.17018 -10.78502 -10.06596 -9.74778 -9.54067 -8.82175 -8.40811 -6.20913 -0.31909 0.22538 0.51134 1.06323 1.28738 1.36415 1.44240 1.49304 1.68014 1.84321 2.22665 2.50535 2.76090 2.92556 3.38844 3.40926 3.46265 3.69451 3.88934 3.93749 4.02513 4.33293 4.45131 4.62966 4.64618 4.80861 4.89896 5.16014 5.25616 5.30178 5.37003 5.49150 5.83055 6.14127 6.19587 6.87044 6.99870 7.24914 8.66207 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.021580 B = 0.003618 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.162033 B = 7738.151117 C = 8450.219024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.991 3.009 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.068 0.932 9 S -0.096 6.096 10 C -0.130 4.130 11 C -0.059 4.059 12 C -0.119 4.119 13 C -0.058 4.058 14 C -0.155 4.155 15 C 0.566 3.434 16 O -0.559 6.559 17 N -0.613 5.613 18 C 0.015 3.985 19 C -0.034 4.034 20 N -0.383 5.383 21 O 0.113 5.887 22 C -0.056 4.056 23 C -0.043 4.043 24 H 0.274 0.726 25 H 0.135 0.865 26 H 0.180 0.820 27 H 0.183 0.817 28 H 0.438 0.562 29 H 0.183 0.817 30 H 0.280 0.720 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.594 -17.730 -0.440 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.813 3.187 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.684 4.684 8 H 0.086 0.914 9 S 0.138 5.862 10 C -0.241 4.241 11 C -0.080 4.080 12 C -0.138 4.138 13 C -0.076 4.076 14 C -0.160 4.160 15 C 0.356 3.644 16 O -0.437 6.437 17 N -0.263 5.263 18 C -0.084 4.084 19 C -0.213 4.213 20 N -0.085 5.085 21 O 0.047 5.953 22 C -0.140 4.140 23 C -0.064 4.064 24 H 0.083 0.917 25 H 0.153 0.847 26 H 0.197 0.803 27 H 0.200 0.800 28 H 0.281 0.719 29 H 0.200 0.800 30 H 0.296 0.704 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 15.930 -17.358 1.496 23.607 hybrid contribution 0.701 1.696 -0.739 1.979 sum 16.631 -15.661 0.757 22.857 Atomic orbital electron populations 1.70105 1.07521 1.28804 1.47796 1.25996 0.96030 1.02859 0.93622 0.85059 0.78015 0.76506 0.79128 1.18572 1.19858 1.19350 1.23072 0.94667 0.91624 1.59038 0.91354 1.83529 1.08683 0.98613 1.95332 1.22496 1.03097 1.02819 0.95702 1.22135 0.94334 0.93882 0.97632 1.21594 0.95614 0.97401 0.99213 1.21789 0.98509 0.97048 0.90258 1.19662 1.00167 1.03259 0.92907 1.18531 0.79003 0.77835 0.89013 1.90731 1.59932 1.53441 1.39629 1.42331 1.33174 1.44578 1.06207 1.18904 0.99784 1.02669 0.87054 1.25322 1.03078 1.03979 0.88887 1.73898 1.03680 1.07264 1.23700 1.84823 1.42779 1.48255 1.19462 1.26264 1.00073 1.02577 0.85134 1.21641 0.93970 0.94099 0.96732 0.91698 0.84661 0.80289 0.80016 0.71917 0.80034 0.70422 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.36 13.22 21.64 0.29 -54.07 16 2 C 0.02 1.15 5.49 84.84 0.47 1.62 16 3 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.54 -31.10 9.46 67.94 0.64 -30.45 16 8 H 0.07 3.90 7.79 -2.91 -0.02 3.88 16 9 S -0.10 -5.16 21.40 -56.49 -1.21 -6.37 16 10 C -0.13 -5.46 5.45 22.65 0.12 -5.34 16 11 C -0.06 -1.88 9.79 22.48 0.22 -1.66 16 12 C -0.12 -2.42 10.02 22.21 0.22 -2.20 16 13 C -0.06 -1.06 9.54 22.57 0.22 -0.84 16 14 C -0.15 -4.48 5.87 -20.11 -0.12 -4.60 16 15 C 0.57 16.05 7.74 86.79 0.67 16.72 16 16 O -0.56 -21.13 13.77 -3.96 -0.05 -21.18 16 17 N -0.61 -10.63 5.42 -305.37 -1.65 -12.28 16 18 C 0.02 0.29 7.14 38.07 0.27 0.56 16 19 C -0.03 -0.93 10.99 85.83 0.94 0.02 16 20 N -0.38 -9.81 12.06 -58.60 -0.71 -10.52 16 21 O 0.11 2.04 11.20 69.39 0.78 2.82 16 22 C -0.06 -0.59 12.33 67.28 0.83 0.24 16 23 C -0.04 -1.70 9.34 22.70 0.21 -1.49 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 26 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 27 H 0.18 1.04 6.40 -2.91 -0.02 1.02 16 28 H 0.44 2.97 6.85 -92.71 -0.64 2.34 16 29 H 0.18 5.88 6.28 -2.91 -0.02 5.86 16 30 H 0.28 -0.78 8.06 -2.91 -0.02 -0.80 16 31 H 0.10 4.78 7.65 -2.91 -0.02 4.76 16 Total: -1.00 -82.33 298.57 4.73 -77.60 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 0.56 Total: 5.13 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.70 Total: -27.43 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.08 Total: -76.87 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.72 Total: -18.36 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -1.21 Total: -6.37 kcal Total: -82.33 4.73 -77.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125693885.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.099 kcal (2) G-P(sol) polarization free energy of solvation -82.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds