Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99873 * 2 1 4 4 H 1.48491 * 109.47070 * 269.99960 * 3 2 1 5 5 H 1.48507 * 109.46891 * 29.99577 * 3 2 1 6 6 H 1.48500 * 109.47166 * 149.99530 * 3 2 1 7 7 C 1.38694 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00526 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.35518 * 116.99692 * 185.06025 * 9 7 2 11 11 C 1.38830 * 120.16457 * 354.39661 * 10 9 7 12 12 C 1.38030 * 120.07388 * 180.30236 * 11 10 9 13 13 C 1.38580 * 120.40501 * 359.68012 * 12 11 10 14 14 C 1.37832 * 120.32331 * 359.97438 * 13 12 11 15 15 C 1.39677 * 119.91648 * 0.02562 * 14 13 12 16 16 C 1.47497 * 120.20011 * 180.02562 * 15 14 13 17 17 O 1.21609 * 120.00474 * 180.02562 * 16 15 14 18 18 N 1.34779 * 119.99513 * 0.02562 * 16 15 14 19 19 C 1.39345 * 120.00102 * 179.97438 * 18 16 15 20 20 C 1.35950 * 127.28646 * 179.97438 * 19 18 16 21 21 C 1.37665 * 114.59239 * 180.23384 * 20 19 18 22 22 N 1.30110 * 116.96562 * 359.54536 * 21 20 19 23 23 S 1.69588 * 107.27472 * 0.42220 * 22 21 20 24 24 H 0.97001 * 119.99934 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.96688 * 359.97438 * 11 10 9 26 26 H 1.07996 * 119.80161 * 179.69138 * 12 11 10 27 27 H 1.08000 * 119.84194 * 180.02562 * 13 12 11 28 28 H 1.07998 * 120.03612 * 180.02562 * 14 13 12 29 29 H 0.96995 * 120.00335 * 359.97438 * 18 16 15 30 30 H 1.08000 * 122.69939 * 359.96758 * 20 19 18 31 31 H 1.08001 * 121.51548 * 179.75192 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0088 -1.2011 0.0005 8 1 3.0888 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0688 -3.5028 0.1076 11 6 3.4556 -3.4400 0.0940 12 6 4.2014 -4.5969 0.1969 13 6 3.5747 -5.8267 0.3209 14 6 2.1989 -5.9075 0.3433 15 6 1.4310 -4.7453 0.2402 16 6 -0.0416 -4.8245 0.2641 17 8 -0.7067 -3.8104 0.1736 18 7 -0.6502 -6.0208 0.3863 19 6 -2.0414 -6.0957 0.4094 20 6 -2.8041 -7.2151 0.5255 21 6 -4.1617 -6.9871 0.5140 22 7 -4.5514 -5.7505 0.4050 23 16 -3.1573 -4.7909 0.2970 24 1 -0.4850 0.8401 -0.0004 25 1 3.9515 -2.4855 -0.0025 26 1 5.2799 -4.5435 0.1808 27 1 4.1671 -6.7261 0.4012 28 1 1.7153 -6.8683 0.4406 29 1 -0.1197 -6.8297 0.4581 30 1 -2.3792 -8.2040 0.6149 31 1 -4.8710 -7.7975 0.5953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132541996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = 15.535536 kcal Electronic energy + Delta-G solvation = -19833.230181 eV Core-core repulsion = 16593.720141 eV Total energy + Delta-G solvation = -3239.510040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12321 -38.81334 -37.98993 -36.55323 -34.60377 -32.49176 -31.13107 -29.37474 -29.08128 -25.60088 -24.75161 -23.23088 -21.69551 -20.89448 -20.21481 -18.23805 -17.82671 -17.48648 -16.41232 -16.02076 -15.07088 -14.90823 -14.68597 -14.44749 -14.18473 -13.93399 -13.87630 -13.27680 -13.03146 -12.75437 -12.71752 -11.84008 -11.53086 -11.33452 -11.06001 -11.03405 -10.98132 -10.89010 -10.54888 -10.22895 -9.66731 -9.15543 -9.00714 -8.54071 -8.39502 -8.18703 -7.49065 -6.58210 -4.18091 1.00061 1.53550 1.59253 2.15230 2.35204 2.70979 3.04893 3.06142 3.11256 3.15702 3.43846 3.82676 4.42111 4.88340 5.00319 5.08291 5.16092 5.33129 5.43921 5.54560 5.69994 5.87402 5.92787 5.93657 6.37478 6.43406 6.50655 6.71336 6.88080 6.93212 7.05004 7.13728 7.46269 7.50806 7.79745 8.48210 8.81037 9.48234 10.54689 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.005605 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.371885 B = 4994.635093 C = 6804.767678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.046 3.954 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.404 4.404 8 H 0.097 0.903 9 O -0.119 6.119 10 C 0.190 3.810 11 C -0.232 4.232 12 C -0.046 4.046 13 C -0.228 4.228 14 C -0.035 4.035 15 C -0.232 4.232 16 C 0.544 3.456 17 O -0.463 6.463 18 N -0.634 5.634 19 C 0.067 3.933 20 C -0.291 4.291 21 C 0.108 3.892 22 N -0.517 5.517 23 S 0.363 5.637 24 H 0.275 0.725 25 H 0.135 0.865 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.413 0.587 30 H 0.149 0.851 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 -12.336 1.003 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.479 4.479 8 H 0.114 0.886 9 O -0.017 6.017 10 C 0.129 3.871 11 C -0.251 4.251 12 C -0.064 4.064 13 C -0.247 4.247 14 C -0.054 4.054 15 C -0.238 4.238 16 C 0.335 3.665 17 O -0.334 6.334 18 N -0.281 5.281 19 C -0.162 4.162 20 C -0.329 4.329 21 C -0.088 4.088 22 N -0.342 5.342 23 S 0.509 5.491 24 H 0.085 0.915 25 H 0.152 0.848 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.251 0.749 30 H 0.167 0.833 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.141 -9.308 0.735 9.338 hybrid contribution 1.670 -1.699 0.207 2.392 sum 1.811 -11.008 0.942 11.195 Atomic orbital electron populations 1.70110 1.06016 1.28185 1.41253 1.25430 0.95862 0.99099 0.95903 0.85690 0.79014 0.79696 0.78932 1.19611 1.19979 1.18966 1.21544 0.92018 0.80849 1.53512 0.88608 1.84135 1.33878 1.11181 1.72476 1.19178 0.89945 0.87108 0.90840 1.21173 0.93183 0.99508 1.11283 1.20955 0.98867 0.92224 0.94389 1.20472 0.93881 0.97320 1.13052 1.20743 0.94091 0.95214 0.95340 1.18392 0.89864 0.92705 1.22807 1.18706 0.88943 0.81886 0.76941 1.90946 1.64629 1.32723 1.45107 1.43018 1.01601 1.11447 1.72006 1.23055 0.90150 1.01796 1.01188 1.20855 0.93108 0.99235 1.19700 1.22184 0.94221 0.94825 0.97558 1.76622 1.23606 1.07356 1.26624 1.85544 0.88237 1.09533 1.65757 0.91518 0.84789 0.86880 0.86955 0.87010 0.74929 0.83302 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.87 13.67 55.48 0.76 -23.11 16 2 C 0.05 1.23 5.49 -17.51 -0.10 1.13 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.40 -10.84 9.49 30.90 0.29 -10.55 16 8 H 0.10 2.32 5.21 -52.49 -0.27 2.04 16 9 O -0.12 -3.33 7.84 -21.07 -0.17 -3.49 16 10 C 0.19 4.41 6.66 -38.59 -0.26 4.15 16 11 C -0.23 -4.63 9.16 -39.44 -0.36 -4.99 16 12 C -0.05 -0.74 10.03 -39.53 -0.40 -1.13 16 13 C -0.23 -3.39 10.03 -39.60 -0.40 -3.78 16 14 C -0.04 -0.54 9.54 -39.19 -0.37 -0.92 16 15 C -0.23 -4.67 5.89 -104.82 -0.62 -5.29 16 16 C 0.54 11.21 7.73 -12.49 -0.10 11.11 16 17 O -0.46 -11.68 12.91 -16.59 -0.21 -11.89 16 18 N -0.63 -10.04 5.37 -12.29 -0.07 -10.11 16 19 C 0.07 1.09 7.28 -14.95 -0.11 0.98 16 20 C -0.29 -3.78 10.27 -40.61 -0.42 -4.20 16 21 C 0.11 1.43 11.26 -18.49 -0.21 1.23 16 22 N -0.52 -8.65 12.09 28.95 0.35 -8.30 16 23 S 0.36 6.77 21.06 -107.50 -2.26 4.51 16 24 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 26 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 27 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.11 1.27 6.40 -52.49 -0.34 0.93 16 29 H 0.41 4.85 6.85 -40.82 -0.28 4.57 16 30 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 291.25 15.07 4.39 4.39 Total: -1.00 -32.64 291.25 -7.28 -39.92 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -2.01 Total: 5.69 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -3.04 Total: -12.26 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 1.04 Total: -41.51 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.38 Total: -15.38 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -2.26 Total: 4.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.64 -7.28 -39.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132541996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.456 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds