Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86802 * 119.99873 * 2 1 4 4 H 1.48491 * 109.47070 * 269.99960 * 3 2 1 5 5 H 1.48507 * 109.46891 * 29.99577 * 3 2 1 6 6 H 1.48500 * 109.47166 * 149.99530 * 3 2 1 7 7 C 1.38694 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00526 * 180.02562 * 7 2 1 9 9 O 1.34820 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.35518 * 116.99692 * 185.06025 * 9 7 2 11 11 C 1.38830 * 120.16457 * 354.39661 * 10 9 7 12 12 C 1.38030 * 120.07388 * 180.30236 * 11 10 9 13 13 C 1.38580 * 120.40501 * 359.68012 * 12 11 10 14 14 C 1.37832 * 120.32331 * 359.97438 * 13 12 11 15 15 C 1.39677 * 119.91648 * 0.02562 * 14 13 12 16 16 C 1.47497 * 120.20011 * 180.02562 * 15 14 13 17 17 O 1.21609 * 120.00474 * 180.02562 * 16 15 14 18 18 N 1.34779 * 119.99513 * 0.02562 * 16 15 14 19 19 C 1.39345 * 120.00102 * 179.97438 * 18 16 15 20 20 C 1.35950 * 127.28646 * 179.97438 * 19 18 16 21 21 C 1.37665 * 114.59239 * 180.23384 * 20 19 18 22 22 N 1.30110 * 116.96562 * 359.54536 * 21 20 19 23 23 S 1.69588 * 107.27472 * 0.42220 * 22 21 20 24 24 H 0.97001 * 119.99934 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.96688 * 359.97438 * 11 10 9 26 26 H 1.07996 * 119.80161 * 179.69138 * 12 11 10 27 27 H 1.08000 * 119.84194 * 180.02562 * 13 12 11 28 28 H 1.07998 * 120.03612 * 180.02562 * 14 13 12 29 29 H 0.96995 * 120.00335 * 359.97438 * 18 16 15 30 30 H 1.08000 * 122.69939 * 359.96758 * 20 19 18 31 31 H 1.08001 * 121.51548 * 179.75192 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0088 -1.2011 0.0005 8 1 3.0888 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0005 10 6 2.0688 -3.5028 0.1076 11 6 3.4556 -3.4400 0.0940 12 6 4.2014 -4.5969 0.1969 13 6 3.5747 -5.8267 0.3209 14 6 2.1989 -5.9075 0.3433 15 6 1.4310 -4.7453 0.2402 16 6 -0.0416 -4.8245 0.2641 17 8 -0.7067 -3.8104 0.1736 18 7 -0.6502 -6.0208 0.3863 19 6 -2.0414 -6.0957 0.4094 20 6 -2.8041 -7.2151 0.5255 21 6 -4.1617 -6.9871 0.5140 22 7 -4.5514 -5.7505 0.4050 23 16 -3.1573 -4.7909 0.2970 24 1 -0.4850 0.8401 -0.0004 25 1 3.9515 -2.4855 -0.0025 26 1 5.2799 -4.5435 0.1808 27 1 4.1671 -6.7261 0.4012 28 1 1.7153 -6.8683 0.4406 29 1 -0.1197 -6.8297 0.4581 30 1 -2.3792 -8.2040 0.6149 31 1 -4.8710 -7.7975 0.5953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132541996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = -7.870274 kcal Electronic energy + Delta-G solvation = -19834.245133 eV Core-core repulsion = 16593.720141 eV Total energy + Delta-G solvation = -3240.524992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.64528 -40.30505 -39.33772 -38.11044 -36.07549 -34.35118 -32.56455 -30.70006 -30.56125 -27.44159 -26.06757 -24.62222 -23.22437 -22.29640 -21.49066 -19.92359 -19.32658 -18.89973 -17.92608 -17.39025 -16.56128 -16.46994 -16.20959 -15.99410 -15.50027 -15.42493 -15.31504 -14.74690 -14.54044 -14.32814 -13.87956 -13.56941 -13.06302 -12.76066 -12.58138 -12.44127 -12.42181 -12.19809 -12.13150 -11.69347 -11.24024 -10.84946 -10.67636 -9.98280 -9.73341 -9.49757 -9.07737 -8.46677 -6.17711 -0.31333 0.15090 0.31883 0.69422 1.08969 1.32891 1.43758 1.51496 1.57238 1.81688 2.00141 2.14250 2.83816 3.16800 3.38832 3.77642 3.98228 4.07376 4.25324 4.36192 4.47637 4.57443 4.68670 4.88605 4.90160 5.04419 5.09050 5.22280 5.41747 5.55566 5.67105 5.79888 5.91751 6.11479 6.22425 6.92228 7.02629 7.74039 8.72743 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.005605 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.371885 B = 4994.635093 C = 6804.767678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.019 4.019 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.427 4.427 8 H 0.109 0.891 9 O -0.185 6.185 10 C 0.154 3.846 11 C -0.256 4.256 12 C -0.034 4.034 13 C -0.198 4.198 14 C -0.026 4.026 15 C -0.244 4.244 16 C 0.538 3.462 17 O -0.520 6.520 18 N -0.612 5.612 19 C 0.053 3.947 20 C -0.251 4.251 21 C 0.117 3.883 22 N -0.527 5.527 23 S 0.245 5.755 24 H 0.271 0.729 25 H 0.125 0.875 26 H 0.155 0.845 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.435 0.565 30 H 0.202 0.798 31 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -17.701 1.544 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.170 1.170 7 C -0.502 4.502 8 H 0.126 0.874 9 O -0.088 6.088 10 C 0.098 3.902 11 C -0.275 4.275 12 C -0.052 4.052 13 C -0.217 4.217 14 C -0.045 4.045 15 C -0.249 4.249 16 C 0.330 3.670 17 O -0.394 6.394 18 N -0.261 5.261 19 C -0.175 4.175 20 C -0.289 4.289 21 C -0.079 4.079 22 N -0.350 5.350 23 S 0.393 5.607 24 H 0.080 0.920 25 H 0.143 0.857 26 H 0.173 0.827 27 H 0.185 0.815 28 H 0.183 0.817 29 H 0.278 0.722 30 H 0.219 0.781 31 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.715 -14.780 1.282 15.082 hybrid contribution 0.967 -0.739 0.088 1.220 sum 3.682 -15.520 1.370 16.009 Atomic orbital electron populations 1.70305 1.08293 1.28700 1.46250 1.26723 0.96699 1.03061 0.95440 0.84585 0.77948 0.74306 0.79309 1.18720 1.19949 1.17006 1.22024 0.92742 0.81566 1.53884 0.87356 1.84152 1.35321 1.12263 1.77016 1.20025 0.91737 0.87351 0.91065 1.21311 0.92164 1.01126 1.12906 1.21501 1.00892 0.91251 0.91536 1.21204 0.93858 0.98549 1.08045 1.21342 0.94606 0.95442 0.93081 1.18871 0.90224 0.93409 1.22433 1.18982 0.89365 0.82483 0.76183 1.90963 1.65789 1.35195 1.47436 1.42563 1.01665 1.10734 1.71155 1.23080 0.89941 1.01108 1.03372 1.21389 0.92377 1.00029 1.15109 1.23161 0.95583 0.94758 0.94433 1.76846 1.21619 1.08699 1.27845 1.86011 0.91838 1.13948 1.68941 0.91966 0.85728 0.82699 0.81519 0.81736 0.72235 0.78125 0.75848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.68 13.67 21.62 0.30 -57.38 16 2 C -0.02 -1.11 5.49 84.85 0.47 -0.64 16 3 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.43 -24.87 9.49 67.93 0.64 -24.22 16 8 H 0.11 5.63 5.21 -2.91 -0.02 5.61 16 9 O -0.19 -11.28 7.84 0.80 0.01 -11.27 16 10 C 0.15 7.45 6.66 22.91 0.15 7.61 16 11 C -0.26 -10.16 9.16 22.36 0.20 -9.96 16 12 C -0.03 -0.94 10.03 22.30 0.22 -0.72 16 13 C -0.20 -4.58 10.03 22.26 0.22 -4.35 16 14 C -0.03 -0.69 9.54 22.52 0.21 -0.47 16 15 C -0.24 -9.73 5.89 -19.99 -0.12 -9.85 16 16 C 0.54 22.81 7.73 86.68 0.67 23.48 16 17 O -0.52 -28.55 12.91 16.84 0.22 -28.33 16 18 N -0.61 -18.33 5.37 -311.06 -1.67 -20.00 16 19 C 0.05 1.66 7.28 82.97 0.60 2.26 16 20 C -0.25 -5.42 10.27 21.60 0.22 -5.20 16 21 C 0.12 2.67 11.26 84.81 0.95 3.63 16 22 N -0.53 -17.37 12.09 -62.31 -0.75 -18.12 16 23 S 0.25 9.75 21.06 -56.49 -1.19 8.56 16 24 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 25 H 0.13 5.06 5.64 -2.91 -0.02 5.04 16 26 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.17 2.52 6.40 -2.91 -0.02 2.50 16 29 H 0.43 8.25 6.85 -92.71 -0.64 7.62 16 30 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.23 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -86.61 291.25 3.97 -82.65 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.57 Total: 17.09 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.46 Total: -18.44 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -2.13 Total: -95.51 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: 0.22 Total: -39.60 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 9.75 SS G_CDS: -1.19 Total: 8.56 kcal Total: -86.61 3.97 -82.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132541996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.777 kcal (2) G-P(sol) polarization free energy of solvation -86.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds