Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00436 * 2 1 4 4 H 1.48500 * 109.46939 * 270.00097 * 3 2 1 5 5 H 1.48497 * 109.46961 * 30.00269 * 3 2 1 6 6 H 1.48502 * 109.47241 * 150.00282 * 3 2 1 7 7 C 1.37880 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00201 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47145 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00247 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99801 * 180.02562 * 10 9 7 13 13 C 1.39949 * 119.99985 * 185.26824 * 12 10 9 14 14 C 1.39982 * 120.19002 * 213.03433 * 13 12 10 15 15 N 1.30967 * 121.64036 * 180.02562 * 14 13 12 16 16 C 1.33694 * 121.58575 * 359.95681 * 15 14 13 17 17 C 1.40586 * 120.92220 * 180.02562 * 16 15 14 18 18 C 1.36197 * 119.77644 * 180.02562 * 17 16 15 19 19 Cl 1.73598 * 119.47211 * 180.02562 * 18 17 16 20 20 C 1.39472 * 121.05169 * 359.97438 * 18 17 16 21 21 C 1.36104 * 120.83426 * 0.27537 * 20 18 17 22 22 C 1.40494 * 119.64168 * 359.50110 * 21 20 18 23 23 C 1.38145 * 120.18275 * 33.01845 * 13 12 10 24 24 H 0.97003 * 119.99775 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46936 * 60.00103 * 9 7 2 26 26 H 1.08998 * 109.47375 * 300.00432 * 9 7 2 27 27 H 0.96998 * 120.00501 * 5.27555 * 12 10 9 28 28 H 1.08007 * 119.17636 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.11100 * 0.04959 * 17 16 15 30 30 H 1.07998 * 119.58321 * 179.97438 * 20 18 17 31 31 H 1.07999 * 120.17956 * 179.74592 * 21 20 18 32 32 H 1.08002 * 120.98632 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0136 -2.6150 -0.0023 11 8 3.2254 -3.5369 -0.0030 12 7 5.3387 -2.8613 -0.0024 13 6 5.8061 -4.1757 -0.1148 14 6 6.9861 -4.5609 0.5324 15 7 7.4495 -5.7828 0.4461 16 6 6.8175 -6.7229 -0.2639 17 6 7.3272 -8.0306 -0.3465 18 6 6.6645 -8.9699 -1.0769 19 17 7.3006 -10.5823 -1.1730 20 6 5.4825 -8.6573 -1.7480 21 6 4.9616 -7.4010 -1.6953 22 6 5.6163 -6.4082 -0.9472 23 6 5.1053 -5.1003 -0.8647 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 5.9685 -2.1277 0.0754 28 1 7.5278 -3.8323 1.1173 29 1 8.2409 -8.2894 0.1678 30 1 4.9767 -9.4206 -2.3208 31 1 4.0479 -7.1695 -2.2223 32 1 4.1922 -4.8271 -1.3726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189701.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = 10.824159 kcal Electronic energy + Delta-G solvation = -19201.689559 eV Core-core repulsion = 15959.931512 eV Total energy + Delta-G solvation = -3241.758047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11282 -39.36854 -37.58658 -36.33824 -34.69131 -33.08790 -32.75323 -30.51155 -30.24958 -28.71142 -24.82609 -24.11314 -22.71509 -22.35245 -20.10134 -18.66787 -17.89961 -17.19201 -16.93392 -16.04007 -15.58571 -15.23910 -14.64678 -14.55450 -14.36337 -14.29932 -13.86249 -13.40090 -13.12140 -12.98752 -12.34668 -12.22036 -12.09972 -11.82383 -11.36679 -11.24127 -11.03813 -10.89378 -10.68952 -10.17743 -9.91762 -9.59792 -9.42165 -9.02941 -8.71242 -8.69355 -7.90570 -6.15490 -4.17212 0.19814 0.56741 1.82829 1.83648 2.56381 3.16739 3.21733 3.24494 3.27256 3.31156 3.95074 4.16083 4.29156 4.44579 4.67306 4.71361 4.79591 4.94082 5.12024 5.14741 5.40241 5.53586 5.63253 5.81616 5.90552 5.99539 6.07963 6.31234 6.38562 6.40327 6.70217 6.81968 7.32223 7.68592 7.73099 8.38596 8.67445 9.02378 9.41129 10.97169 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.040276 B = 0.003056 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.038309 B = 9160.216030 C = 9728.863485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.093 0.907 9 C -0.026 4.026 10 C 0.521 3.479 11 O -0.507 6.507 12 N -0.685 5.685 13 C 0.110 3.890 14 C 0.122 3.878 15 N -0.458 5.458 16 C 0.112 3.888 17 C -0.076 4.076 18 C -0.025 4.025 19 Cl -0.070 7.070 20 C -0.114 4.114 21 C -0.076 4.076 22 C -0.077 4.077 23 C -0.072 4.072 24 H 0.266 0.734 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.411 0.589 28 H 0.164 0.836 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.142 0.858 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.579 -12.988 -2.851 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.111 0.889 9 C -0.066 4.066 10 C 0.311 3.689 11 O -0.379 6.379 12 N -0.331 5.331 13 C 0.012 3.988 14 C -0.053 4.053 15 N -0.165 5.165 16 C -0.010 4.010 17 C -0.096 4.096 18 C -0.054 4.054 19 Cl -0.041 7.041 20 C -0.132 4.132 21 C -0.095 4.095 22 C -0.080 4.080 23 C -0.101 4.101 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.247 0.753 28 H 0.181 0.819 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.160 0.840 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.587 -13.932 -2.460 21.801 hybrid contribution -0.048 1.479 -0.315 1.513 sum 16.539 -12.454 -2.775 20.888 Atomic orbital electron populations 1.69882 1.06214 1.27053 1.49930 1.24967 0.94817 0.98795 0.94543 0.86884 0.80300 0.83998 0.78650 1.20035 1.20989 1.19058 1.20936 0.87332 0.95854 1.51678 0.88905 1.19719 0.99953 0.87878 0.99046 1.21823 0.79606 0.94210 0.73227 1.90612 1.54657 1.46757 1.45861 1.44096 1.09220 1.05507 1.74321 1.18890 0.95878 0.87417 0.96650 1.22878 0.93401 0.93250 0.95751 1.67875 1.31532 1.00719 1.16414 1.18533 0.92367 0.93358 0.96791 1.20553 1.00353 0.90192 0.98486 1.20490 0.96523 0.86629 1.01754 1.98372 1.86416 1.21991 1.97365 1.20740 0.94791 0.97516 1.00158 1.21017 0.99463 0.91614 0.97433 1.18809 0.95568 0.94737 0.98858 1.21800 1.00730 0.91283 0.96312 0.92395 0.93085 0.93403 0.75274 0.81869 0.83882 0.84512 0.84021 0.82588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -5.50 6.54 56.52 0.37 -5.13 16 7 C -0.52 -14.32 9.48 -34.44 -0.33 -14.65 16 8 H 0.09 2.92 7.00 -52.48 -0.37 2.55 16 9 C -0.03 -0.56 4.53 -29.04 -0.13 -0.69 16 10 C 0.52 10.23 7.57 -10.99 -0.08 10.14 16 11 O -0.51 -11.82 13.15 5.55 0.07 -11.75 16 12 N -0.68 -9.85 5.35 -9.76 -0.05 -9.90 16 13 C 0.11 1.58 6.30 -83.53 -0.53 1.05 16 14 C 0.12 1.52 11.08 -17.27 -0.19 1.33 16 15 N -0.46 -6.26 10.32 -10.82 -0.11 -6.37 16 16 C 0.11 1.53 6.60 -84.84 -0.56 0.97 16 17 C -0.08 -0.90 9.72 -39.43 -0.38 -1.29 16 18 C -0.03 -0.27 6.27 -39.86 -0.25 -0.52 16 19 Cl -0.07 -0.67 28.91 -51.86 -1.50 -2.17 16 20 C -0.11 -1.17 9.72 -39.89 -0.39 -1.56 16 21 C -0.08 -0.88 9.77 -39.50 -0.39 -1.27 16 22 C -0.08 -1.07 5.74 -106.80 -0.61 -1.68 16 23 C -0.07 -1.10 8.51 -38.70 -0.33 -1.43 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.05 1.02 7.20 -51.92 -0.37 0.65 16 26 H 0.05 0.94 7.57 -51.93 -0.39 0.55 16 27 H 0.41 4.31 8.82 -40.82 -0.36 3.95 16 28 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 29 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.16 2.61 6.46 -52.49 -0.34 2.27 16 LS Contribution 298.27 15.07 4.49 4.49 Total: -1.00 -32.45 298.27 -7.95 -40.40 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -2.69 Total: 3.90 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.27 Total: -7.73 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.61 Total: -42.24 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.45 -7.95 -40.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189701.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.219 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds