Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00436 * 2 1 4 4 H 1.48500 * 109.46939 * 270.00097 * 3 2 1 5 5 H 1.48497 * 109.46961 * 30.00269 * 3 2 1 6 6 H 1.48502 * 109.47241 * 150.00282 * 3 2 1 7 7 C 1.37880 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00201 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47145 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00247 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99801 * 180.02562 * 10 9 7 13 13 C 1.39949 * 119.99985 * 185.26824 * 12 10 9 14 14 C 1.39982 * 120.19002 * 213.03433 * 13 12 10 15 15 N 1.30967 * 121.64036 * 180.02562 * 14 13 12 16 16 C 1.33694 * 121.58575 * 359.95681 * 15 14 13 17 17 C 1.40586 * 120.92220 * 180.02562 * 16 15 14 18 18 C 1.36197 * 119.77644 * 180.02562 * 17 16 15 19 19 Cl 1.73598 * 119.47211 * 180.02562 * 18 17 16 20 20 C 1.39472 * 121.05169 * 359.97438 * 18 17 16 21 21 C 1.36104 * 120.83426 * 0.27537 * 20 18 17 22 22 C 1.40494 * 119.64168 * 359.50110 * 21 20 18 23 23 C 1.38145 * 120.18275 * 33.01845 * 13 12 10 24 24 H 0.97003 * 119.99775 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46936 * 60.00103 * 9 7 2 26 26 H 1.08998 * 109.47375 * 300.00432 * 9 7 2 27 27 H 0.96998 * 120.00501 * 5.27555 * 12 10 9 28 28 H 1.08007 * 119.17636 * 0.02562 * 14 13 12 29 29 H 1.08001 * 120.11100 * 0.04959 * 17 16 15 30 30 H 1.07998 * 119.58321 * 179.97438 * 20 18 17 31 31 H 1.07999 * 120.17956 * 179.74592 * 21 20 18 32 32 H 1.08002 * 120.98632 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0136 -2.6150 -0.0023 11 8 3.2254 -3.5369 -0.0030 12 7 5.3387 -2.8613 -0.0024 13 6 5.8061 -4.1757 -0.1148 14 6 6.9861 -4.5609 0.5324 15 7 7.4495 -5.7828 0.4461 16 6 6.8175 -6.7229 -0.2639 17 6 7.3272 -8.0306 -0.3465 18 6 6.6645 -8.9699 -1.0769 19 17 7.3006 -10.5823 -1.1730 20 6 5.4825 -8.6573 -1.7480 21 6 4.9616 -7.4010 -1.6953 22 6 5.6163 -6.4082 -0.9472 23 6 5.1053 -5.1003 -0.8647 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6806 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 5.9685 -2.1277 0.0754 28 1 7.5278 -3.8323 1.1173 29 1 8.2409 -8.2894 0.1678 30 1 4.9767 -9.4206 -2.3208 31 1 4.0479 -7.1695 -2.2223 32 1 4.1922 -4.8271 -1.3726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189701.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = -11.140985 kcal Electronic energy + Delta-G solvation = -19202.642039 eV Core-core repulsion = 15959.931512 eV Total energy + Delta-G solvation = -3242.710527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.18177 -40.72036 -38.58506 -37.25823 -35.94904 -35.04808 -33.90541 -31.97070 -31.42281 -29.98389 -26.11256 -25.41478 -24.09477 -23.34162 -21.53816 -19.75153 -19.08631 -18.93995 -18.06721 -17.42185 -16.82333 -16.47656 -16.20133 -15.67911 -15.58431 -15.50954 -15.06859 -14.74567 -14.28730 -14.12749 -13.96200 -13.52124 -13.12384 -12.93546 -12.82527 -12.42845 -12.29792 -12.13419 -12.04332 -11.87003 -11.54655 -11.11260 -10.80941 -10.75227 -10.37632 -9.66255 -8.99648 -8.26034 -6.35490 -0.79059 -0.42459 0.78481 0.97384 1.41927 1.45426 1.50679 1.56498 1.87348 2.05162 2.39248 2.93163 3.08128 3.23222 3.47972 3.67738 3.72296 3.82632 4.02949 4.11451 4.28470 4.48459 4.65261 4.68425 4.74285 4.96695 4.98976 5.04001 5.09719 5.27582 5.41934 5.46536 5.68052 6.19992 6.51200 6.69415 6.81091 7.19903 7.32192 8.91318 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.040276 B = 0.003056 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.038309 B = 9160.216030 C = 9728.863485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.223 1.223 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.025 4.025 10 C 0.523 3.477 11 O -0.557 6.557 12 N -0.658 5.658 13 C 0.096 3.904 14 C 0.133 3.867 15 N -0.467 5.467 16 C 0.099 3.901 17 C -0.083 4.083 18 C -0.022 4.022 19 Cl -0.054 7.054 20 C -0.104 4.104 21 C -0.088 4.088 22 C -0.092 4.092 23 C -0.089 4.089 24 H 0.268 0.732 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.433 0.567 28 H 0.204 0.796 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.983 -12.445 -2.712 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.145 1.145 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.065 4.065 10 C 0.313 3.687 11 O -0.433 6.433 12 N -0.307 5.307 13 C -0.002 4.002 14 C -0.042 4.042 15 N -0.174 5.174 16 C -0.023 4.023 17 C -0.102 4.102 18 C -0.051 4.051 19 Cl -0.025 7.025 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.094 4.094 23 C -0.118 4.118 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.274 0.726 28 H 0.220 0.780 29 H 0.174 0.826 30 H 0.181 0.819 31 H 0.169 0.831 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 20.076 -13.417 -2.324 24.258 hybrid contribution -1.130 1.076 -0.398 1.610 sum 18.947 -12.341 -2.722 22.774 Atomic orbital electron populations 1.70091 1.08921 1.28448 1.51948 1.26137 0.95740 1.03955 0.93664 0.85562 0.80052 0.76779 0.79565 1.18788 1.21642 1.14514 1.21156 0.90931 0.93747 1.51596 0.95137 1.19638 0.95777 0.89689 1.01384 1.21514 0.81013 0.93123 0.73017 1.90612 1.56495 1.47775 1.48442 1.43563 1.07664 1.06596 1.72838 1.19031 0.96797 0.86929 0.97456 1.23363 0.92353 0.93531 0.94939 1.67953 1.31668 1.01127 1.16655 1.18811 0.92379 0.94231 0.96866 1.20701 1.00960 0.89667 0.98913 1.20624 0.96365 0.87212 1.00918 1.98382 1.86204 1.20689 1.97235 1.21025 0.94370 0.97450 0.99355 1.21194 0.99989 0.91884 0.97638 1.18947 0.96166 0.94603 0.99712 1.21750 1.00308 0.92619 0.97157 0.92339 0.90250 0.90460 0.72625 0.77982 0.82630 0.81938 0.83145 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 2 C 0.00 0.09 5.47 84.66 0.46 0.55 16 3 Si 0.96 39.71 27.47 68.60 1.88 41.60 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.22 -7.64 6.54 99.48 0.65 -6.99 16 7 C -0.54 -30.46 9.48 25.60 0.24 -30.22 16 8 H 0.03 2.06 7.00 -2.91 -0.02 2.04 16 9 C -0.03 -1.04 4.53 29.10 0.13 -0.91 16 10 C 0.52 20.47 7.57 87.66 0.66 21.13 16 11 O -0.56 -27.32 13.15 -3.06 -0.04 -27.36 16 12 N -0.66 -17.79 5.35 -303.18 -1.62 -19.41 16 13 C 0.10 2.65 6.30 38.25 0.24 2.89 16 14 C 0.13 3.01 11.08 85.24 0.94 3.95 16 15 N -0.47 -11.94 10.32 -188.14 -1.94 -13.88 16 16 C 0.10 2.61 6.60 40.30 0.27 2.87 16 17 C -0.08 -1.84 9.72 22.37 0.22 -1.62 16 18 C -0.02 -0.45 6.27 22.09 0.14 -0.31 16 19 Cl -0.05 -0.92 28.91 -2.72 -0.08 -1.00 16 20 C -0.10 -1.99 9.72 22.07 0.21 -1.77 16 21 C -0.09 -2.03 9.77 22.32 0.22 -1.81 16 22 C -0.09 -2.55 5.74 -21.28 -0.12 -2.67 16 23 C -0.09 -2.80 8.51 22.84 0.19 -2.61 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.08 2.86 7.20 -2.38 -0.02 2.85 16 26 H 0.08 2.77 7.57 -2.39 -0.02 2.75 16 27 H 0.43 7.55 8.82 -92.71 -0.82 6.73 16 28 H 0.20 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.13 4.75 6.46 -2.91 -0.02 4.73 16 Total: -1.00 -75.89 298.27 2.62 -73.27 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.31 Total: 16.56 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 3.81 Total: -10.52 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -3.26 Total: -92.55 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.04 Total: -27.36 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.88 Total: 41.60 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -75.89 2.62 -73.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189701.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.124 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds