Wall clock time and date at job start Tue Mar 31 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47210 * 269.99923 * 3 2 1 5 5 H 1.48506 * 109.46854 * 30.00372 * 3 2 1 6 6 H 1.48504 * 109.46896 * 149.99886 * 3 2 1 7 7 C 1.37873 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00673 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47326 * 180.02562 * 9 7 2 11 11 O 1.21281 * 120.00019 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99743 * 179.97438 * 10 9 7 13 13 C 1.39597 * 119.99820 * 184.99889 * 12 10 9 14 14 C 1.37998 * 120.32556 * 269.07412 * 13 12 10 15 15 Cl 1.73602 * 119.69846 * 359.97438 * 14 13 12 16 16 C 1.39188 * 120.60768 * 180.02562 * 14 13 12 17 17 C 1.36185 * 121.15191 * 0.27068 * 16 14 13 18 18 C 1.40508 * 120.06730 * 359.47035 * 17 16 14 19 19 N 1.33744 * 120.98444 * 180.24552 * 18 17 16 20 20 C 1.31107 * 121.31966 * 180.27930 * 19 18 17 21 21 C 1.39264 * 121.74310 * 0.02562 * 20 19 18 22 22 C 1.36659 * 119.91586 * 359.97438 * 21 20 19 23 23 C 1.40560 * 118.17714 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47028 * 59.99978 * 9 7 2 26 26 H 1.09005 * 109.46864 * 300.00273 * 9 7 2 27 27 H 0.96997 * 120.00130 * 5.00769 * 12 10 9 28 28 H 1.07997 * 119.42410 * 179.97438 * 16 14 13 29 29 H 1.08001 * 119.96594 * 179.73069 * 17 16 14 30 30 H 1.08002 * 119.12677 * 179.97438 * 20 19 18 31 31 H 1.07998 * 120.04201 * 180.02562 * 21 20 19 32 32 H 1.08005 * 120.91450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 8 3.4227 -3.4230 -0.0009 12 7 1.7810 -4.9153 -0.0018 13 6 2.6837 -5.9748 0.1037 14 6 3.2181 -6.5506 -1.0309 15 17 2.7624 -5.9520 -2.5954 16 6 4.1182 -7.6077 -0.9324 17 6 4.4912 -8.1049 0.2793 18 6 3.9750 -7.5439 1.4596 19 7 4.3325 -8.0146 2.6593 20 6 3.8507 -7.4997 3.7646 21 6 2.9457 -6.4413 3.7462 22 6 2.5388 -5.9132 2.5533 23 6 3.0574 -6.4679 1.3704 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 0.8304 -5.0936 -0.0756 28 1 4.5244 -8.0443 -1.8329 29 1 5.1878 -8.9285 0.3332 30 1 4.1634 -7.9076 4.7145 31 1 2.5666 -6.0380 4.6735 32 1 1.8379 -5.0922 2.5202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:07 Heat of formation + Delta-G solvation = 9.858464 kcal Electronic energy + Delta-G solvation = -19886.836918 eV Core-core repulsion = 16645.036995 eV Total energy + Delta-G solvation = -3241.799922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07085 -38.98685 -37.34870 -36.01553 -34.69371 -33.00315 -32.51220 -30.54320 -29.70886 -28.30363 -24.56822 -23.82474 -23.67751 -21.77455 -19.92708 -18.54146 -17.60472 -17.23151 -16.42102 -16.24239 -15.42584 -15.06346 -14.80147 -14.52987 -14.34139 -13.92114 -13.47741 -13.16518 -12.96396 -12.74013 -12.42383 -12.15991 -11.85520 -11.29274 -10.95288 -10.87838 -10.82478 -10.69218 -10.56777 -10.02697 -9.73385 -9.35176 -9.01562 -8.93403 -8.80344 -8.48810 -8.15289 -6.11872 -4.11906 0.20038 0.64299 1.83365 2.15715 2.67739 3.31720 3.37194 3.42834 3.48161 3.56582 3.96217 4.15182 4.43644 4.61053 4.62262 4.85711 4.90019 5.06613 5.11998 5.26801 5.49654 5.64642 5.78115 5.80707 6.02234 6.10306 6.18167 6.29743 6.57623 6.96653 7.09848 7.21663 7.76126 7.80379 7.91596 8.26079 8.98414 9.03223 9.53576 11.00280 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.005033 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.839984 B = 5562.047819 C = 6625.773300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.010 3.990 10 C 0.521 3.479 11 O -0.524 6.524 12 N -0.708 5.708 13 C 0.191 3.809 14 C -0.038 4.038 15 Cl -0.050 7.050 16 C -0.086 4.086 17 C -0.087 4.087 18 C 0.133 3.867 19 N -0.477 5.477 20 C 0.135 3.865 21 C -0.178 4.178 22 C -0.036 4.036 23 C -0.094 4.094 24 H 0.262 0.738 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.409 0.591 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 -17.455 3.067 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.029 4.029 10 C 0.312 3.688 11 O -0.396 6.396 12 N -0.364 5.364 13 C 0.097 3.903 14 C -0.066 4.066 15 Cl -0.021 7.021 16 C -0.107 4.107 17 C -0.105 4.105 18 C 0.011 3.989 19 N -0.185 5.185 20 C -0.037 4.037 21 C -0.198 4.198 22 C -0.063 4.063 23 C -0.098 4.098 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.247 0.753 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.141 -17.749 2.858 18.448 hybrid contribution -0.751 1.612 -0.208 1.791 sum 3.390 -16.136 2.650 16.700 Atomic orbital electron populations 1.69948 1.06023 1.27034 1.50878 1.24983 0.94905 0.99470 0.95058 0.86431 0.79856 0.82582 0.78264 1.20535 1.21209 1.19659 1.21129 0.94239 0.88939 1.50535 0.90677 1.19255 0.93950 0.89969 0.99775 1.22309 0.91436 0.82385 0.72646 1.90588 1.17983 1.83945 1.47111 1.43958 1.09202 1.04439 1.78778 1.17228 0.93665 0.89485 0.89941 1.21358 1.00191 0.98083 0.87007 1.98387 1.91324 1.87553 1.24847 1.20664 0.96269 0.94957 0.98839 1.20676 1.00062 1.00340 0.89458 1.18784 0.94477 0.93071 0.92580 1.68092 1.24003 1.28745 0.97648 1.22971 0.91879 0.92144 0.96751 1.21914 1.00086 0.98632 0.99169 1.21482 0.96527 0.97088 0.91153 1.18930 0.99280 0.97838 0.93756 0.92817 0.93080 0.93183 0.75274 0.84041 0.83811 0.82248 0.84188 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.44 8.92 -34.44 -0.31 -14.75 16 8 H 0.08 2.24 6.75 -52.48 -0.35 1.88 16 9 C 0.01 0.24 5.46 -29.03 -0.16 0.08 16 10 C 0.52 11.40 7.78 -10.98 -0.09 11.31 16 11 O -0.52 -13.43 15.44 5.56 0.09 -13.35 16 12 N -0.71 -11.99 3.78 -9.64 -0.04 -12.02 16 13 C 0.19 3.11 5.28 -83.38 -0.44 2.66 16 14 C -0.04 -0.57 6.33 -39.32 -0.25 -0.82 16 15 Cl -0.05 -0.76 28.39 -51.86 -1.47 -2.23 16 16 C -0.09 -1.07 9.71 -39.97 -0.39 -1.45 16 17 C -0.09 -1.07 9.96 -39.47 -0.39 -1.46 16 18 C 0.13 1.92 6.60 -84.86 -0.56 1.36 16 19 N -0.48 -6.46 10.34 -10.99 -0.11 -6.57 16 20 C 0.14 1.50 11.14 -17.48 -0.19 1.31 16 21 C -0.18 -2.01 10.03 -39.77 -0.40 -2.41 16 22 C -0.04 -0.51 9.64 -39.28 -0.38 -0.89 16 23 C -0.09 -1.45 5.75 -106.67 -0.61 -2.06 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.41 5.73 8.83 -40.82 -0.36 5.37 16 28 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 1.99 7.60 -52.48 -0.40 1.60 16 LS Contribution 304.17 15.07 4.58 4.58 Total: -1.00 -33.34 304.17 -8.29 -41.63 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -2.79 Total: 1.76 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -4.27 Total: -5.63 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.59 Total: -43.60 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.47 Total: -2.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.34 -8.29 -41.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.487 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds