Wall clock time and date at job start Tue Mar 31 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48497 * 109.47210 * 269.99923 * 3 2 1 5 5 H 1.48506 * 109.46854 * 30.00372 * 3 2 1 6 6 H 1.48504 * 109.46896 * 149.99886 * 3 2 1 7 7 C 1.37873 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00673 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99929 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47326 * 180.02562 * 9 7 2 11 11 O 1.21281 * 120.00019 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99743 * 179.97438 * 10 9 7 13 13 C 1.39597 * 119.99820 * 184.99889 * 12 10 9 14 14 C 1.37998 * 120.32556 * 269.07412 * 13 12 10 15 15 Cl 1.73602 * 119.69846 * 359.97438 * 14 13 12 16 16 C 1.39188 * 120.60768 * 180.02562 * 14 13 12 17 17 C 1.36185 * 121.15191 * 0.27068 * 16 14 13 18 18 C 1.40508 * 120.06730 * 359.47035 * 17 16 14 19 19 N 1.33744 * 120.98444 * 180.24552 * 18 17 16 20 20 C 1.31107 * 121.31966 * 180.27930 * 19 18 17 21 21 C 1.39264 * 121.74310 * 0.02562 * 20 19 18 22 22 C 1.36659 * 119.91586 * 359.97438 * 21 20 19 23 23 C 1.40560 * 118.17714 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00053 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47028 * 59.99978 * 9 7 2 26 26 H 1.09005 * 109.46864 * 300.00273 * 9 7 2 27 27 H 0.96997 * 120.00130 * 5.00769 * 12 10 9 28 28 H 1.07997 * 119.42410 * 179.97438 * 16 14 13 29 29 H 1.08001 * 119.96594 * 179.73069 * 17 16 14 30 30 H 1.08002 * 119.12677 * 179.97438 * 20 19 18 31 31 H 1.07998 * 120.04201 * 180.02562 * 21 20 19 32 32 H 1.08005 * 120.91450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 8 3.4227 -3.4230 -0.0009 12 7 1.7810 -4.9153 -0.0018 13 6 2.6837 -5.9748 0.1037 14 6 3.2181 -6.5506 -1.0309 15 17 2.7624 -5.9520 -2.5954 16 6 4.1182 -7.6077 -0.9324 17 6 4.4912 -8.1049 0.2793 18 6 3.9750 -7.5439 1.4596 19 7 4.3325 -8.0146 2.6593 20 6 3.8507 -7.4997 3.7646 21 6 2.9457 -6.4413 3.7462 22 6 2.5388 -5.9132 2.5533 23 6 3.0574 -6.4679 1.3704 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5575 0.8880 27 1 0.8304 -5.0936 -0.0756 28 1 4.5244 -8.0443 -1.8329 29 1 5.1878 -8.9285 0.3332 30 1 4.1634 -7.9076 4.7145 31 1 2.5666 -6.0380 4.6735 32 1 1.8379 -5.0922 2.5202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:06 Heat of formation + Delta-G solvation = -11.079674 kcal Electronic energy + Delta-G solvation = -19887.744863 eV Core-core repulsion = 16645.036995 eV Total energy + Delta-G solvation = -3242.707868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16566 -40.50501 -38.54328 -37.16676 -36.02699 -35.12459 -33.67901 -31.57017 -31.35334 -29.80546 -26.07642 -25.26269 -24.69971 -23.10169 -21.48622 -19.62283 -18.80414 -18.44137 -18.26224 -17.81434 -16.89962 -16.43304 -16.06061 -16.01383 -15.45291 -15.42687 -14.81164 -14.37578 -14.22833 -14.19129 -13.85057 -13.46049 -13.29998 -12.83275 -12.80298 -12.60586 -12.08399 -12.03674 -11.99982 -11.63029 -11.48211 -10.88093 -10.65395 -10.61884 -10.45054 -9.80848 -9.26384 -8.27006 -6.34028 -0.84698 -0.36037 0.76564 0.99668 1.39417 1.39906 1.52135 1.68478 1.73465 2.15772 2.43379 2.94956 3.08817 3.24433 3.59794 3.63785 3.86397 3.93111 4.02057 4.21486 4.37003 4.57338 4.64612 4.80766 4.88816 5.01968 5.03367 5.19460 5.22539 5.28577 5.56735 5.67318 5.74887 5.98665 6.50164 6.78480 6.78980 7.29085 7.40377 8.84841 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.005033 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.839984 B = 5562.047819 C = 6625.773300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.013 3.987 10 C 0.533 3.467 11 O -0.565 6.565 12 N -0.685 5.685 13 C 0.156 3.844 14 C -0.043 4.043 15 Cl -0.058 7.058 16 C -0.089 4.089 17 C -0.075 4.075 18 C 0.113 3.887 19 N -0.489 5.489 20 C 0.138 3.862 21 C -0.162 4.162 22 C -0.067 4.067 23 C -0.110 4.110 24 H 0.268 0.732 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.421 0.579 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.203 0.797 31 H 0.173 0.827 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 -18.633 4.131 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.072 0.928 9 C -0.026 4.026 10 C 0.324 3.676 11 O -0.442 6.442 12 N -0.339 5.339 13 C 0.062 3.938 14 C -0.071 4.071 15 Cl -0.029 7.029 16 C -0.109 4.109 17 C -0.093 4.093 18 C -0.008 4.008 19 N -0.197 5.197 20 C -0.034 4.034 21 C -0.181 4.181 22 C -0.094 4.094 23 C -0.114 4.114 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.261 0.739 28 H 0.190 0.810 29 H 0.191 0.809 30 H 0.219 0.781 31 H 0.190 0.810 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.885 -18.971 3.915 19.977 hybrid contribution -1.004 1.864 -0.429 2.160 sum 3.882 -17.107 3.486 17.884 Atomic orbital electron populations 1.70013 1.06998 1.28115 1.50975 1.25707 0.95793 1.02485 0.94449 0.85518 0.78526 0.78904 0.78533 1.19845 1.19734 1.20029 1.21305 0.93560 0.91102 1.51423 0.92844 1.19072 0.94042 0.90149 0.99335 1.21650 0.90071 0.83482 0.72388 1.90558 1.19257 1.84879 1.49512 1.43404 1.10169 1.03409 1.76893 1.17394 0.95162 0.90068 0.91136 1.21605 1.00514 0.98739 0.86244 1.98381 1.91457 1.87800 1.25292 1.20956 0.95562 0.94144 1.00247 1.21052 0.99359 1.00246 0.88656 1.19114 0.94688 0.93178 0.93836 1.68177 1.24469 1.29177 0.97881 1.23708 0.90662 0.91356 0.97682 1.22318 0.98758 0.97695 0.99369 1.21583 0.97733 0.97904 0.92147 1.19070 1.00008 0.98643 0.93657 0.92335 0.93692 0.93224 0.73878 0.81014 0.80920 0.78053 0.80959 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.95 13.29 21.45 0.28 -52.66 16 2 C 0.01 0.83 5.46 84.65 0.46 1.29 16 3 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -31.13 8.92 25.60 0.23 -30.90 16 8 H 0.05 3.30 6.75 -2.91 -0.02 3.28 16 9 C 0.01 0.68 5.46 29.10 0.16 0.84 16 10 C 0.53 24.11 7.78 87.66 0.68 24.80 16 11 O -0.57 -30.02 15.44 -3.03 -0.05 -30.06 16 12 N -0.68 -23.83 3.78 -302.79 -1.14 -24.98 16 13 C 0.16 5.13 5.28 38.52 0.20 5.33 16 14 C -0.04 -1.27 6.33 22.44 0.14 -1.13 16 15 Cl -0.06 -1.77 28.39 -2.72 -0.08 -1.85 16 16 C -0.09 -2.05 9.71 22.02 0.21 -1.83 16 17 C -0.07 -1.69 9.96 22.34 0.22 -1.47 16 18 C 0.11 3.11 6.60 40.26 0.27 3.37 16 19 N -0.49 -12.07 10.34 -188.70 -1.95 -14.02 16 20 C 0.14 2.65 11.14 85.05 0.95 3.59 16 21 C -0.16 -3.30 10.03 22.15 0.22 -3.08 16 22 C -0.07 -1.87 9.64 22.47 0.22 -1.66 16 23 C -0.11 -3.37 5.75 -21.19 -0.12 -3.49 16 24 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 26 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.42 12.19 8.83 -92.71 -0.82 11.37 16 28 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 29 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 30 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.13 3.81 7.60 -2.91 -0.02 3.79 16 Total: -1.00 -72.83 304.17 3.29 -69.53 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.36 Total: 11.36 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 3.84 Total: -4.32 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -2.81 Total: -91.66 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -72.83 3.29 -69.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.453 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds