Wall clock time and date at job start Tue Mar 31 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36855 * 120.00241 * 2 1 4 4 H 1.08008 * 119.99951 * 171.52033 * 3 2 1 5 5 C 1.39056 * 120.00384 * 351.51746 * 3 2 1 6 6 N 1.31362 * 119.99445 * 7.73674 * 5 3 2 7 7 Si 1.86793 * 120.00268 * 187.74137 * 5 3 2 8 8 H 1.48495 * 109.47311 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47108 * 120.00035 * 7 5 3 10 10 H 1.48503 * 109.46860 * 239.99584 * 7 5 3 11 11 C 1.34782 * 119.99755 * 179.97438 * 2 1 3 12 12 O 1.21609 * 119.99880 * 183.78568 * 11 2 1 13 13 C 1.47580 * 119.99938 * 3.79669 * 11 2 1 14 14 C 1.39100 * 120.28029 * 303.53430 * 13 11 2 15 15 C 1.40491 * 117.98299 * 179.73078 * 14 13 11 16 16 C 1.40560 * 121.19185 * 180.27664 * 15 14 13 17 17 C 1.36149 * 119.61806 * 180.02562 * 16 15 14 18 18 C 1.39328 * 120.83357 * 359.96221 * 17 16 15 19 19 C 1.36148 * 121.09506 * 0.02562 * 18 17 16 20 20 C 1.40514 * 119.81903 * 0.02562 * 19 18 17 21 21 N 1.33821 * 120.79435 * 180.02562 * 20 19 18 22 22 C 1.30939 * 121.71527 * 179.97438 * 21 20 19 23 23 Cl 1.73598 * 119.25450 * 180.02562 * 22 21 20 24 24 H 1.09003 * 109.47443 * 176.83073 * 1 2 3 25 25 H 1.08998 * 109.47144 * 296.83769 * 1 2 3 26 26 H 1.09001 * 109.46815 * 56.83647 * 1 2 3 27 27 H 0.96998 * 119.99695 * 180.02562 * 6 5 3 28 28 H 1.07994 * 121.01120 * 0.02562 * 14 13 11 29 29 H 1.07997 * 120.19046 * 359.95052 * 16 15 14 30 30 H 1.08000 * 119.58247 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.45531 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.08822 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1852 0.0000 4 1 3.2205 1.1902 0.1379 5 6 1.4656 2.3829 -0.1776 6 7 0.1521 2.3932 -0.1932 7 14 2.4148 3.9770 -0.3942 8 1 3.8720 3.6970 -0.3382 9 1 2.0762 4.5801 -1.7084 10 1 2.0505 4.9215 0.6923 11 6 2.1388 -1.1673 0.0005 12 8 3.3529 -1.1684 0.0701 13 6 1.4033 -2.4439 -0.0835 14 6 0.4223 -2.7512 0.8535 15 6 -0.2518 -3.9771 0.7244 16 6 -1.2588 -4.3530 1.6300 17 6 -1.8910 -5.5489 1.4750 18 6 -1.5530 -6.4050 0.4291 19 6 -0.5827 -6.0724 -0.4663 20 6 0.0941 -4.8475 -0.3403 21 7 1.0506 -4.5007 -1.2096 22 6 1.6924 -3.3638 -1.1095 23 17 2.9216 -2.9782 -2.2731 24 1 -0.3634 -1.0261 -0.0568 25 1 -0.3633 0.4639 0.9170 26 1 -0.3633 0.5622 -0.8603 27 1 -0.3249 3.2286 -0.3175 28 1 0.1826 -2.0661 1.6532 29 1 -1.5287 -3.6977 2.4449 30 1 -2.6644 -5.8374 2.1715 31 1 -2.0685 -7.3485 0.3273 32 1 -0.3335 -6.7486 -1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152405677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:09 Heat of formation + Delta-G solvation = 36.558617 kcal Electronic energy + Delta-G solvation = -20165.248093 eV Core-core repulsion = 16924.605976 eV Total energy + Delta-G solvation = -3240.642117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78290 -38.57970 -36.99954 -35.90277 -34.81067 -33.51530 -31.69416 -30.32937 -29.98978 -26.51575 -25.19033 -24.06211 -23.45391 -22.09725 -20.03930 -18.22922 -17.29982 -17.14679 -16.60668 -15.74673 -14.91205 -14.69081 -14.62284 -14.28178 -14.03342 -13.82708 -13.55040 -13.22312 -12.65761 -12.39324 -11.94746 -11.72769 -11.71293 -11.43677 -11.17302 -11.03154 -10.78948 -10.73138 -10.47895 -10.40673 -10.06385 -9.65458 -9.15561 -8.64963 -8.42344 -8.16937 -8.02057 -6.41313 -3.92375 0.34619 0.72601 1.96991 2.11966 2.76398 3.08701 3.18313 3.25726 3.73502 3.96496 4.13054 4.39546 4.58087 4.67016 4.80647 4.91046 5.03213 5.14080 5.15338 5.28123 5.50840 5.75574 5.94255 5.95350 5.97734 6.23151 6.30710 6.38025 6.46118 6.76476 6.91962 7.27910 7.43491 7.76965 7.91650 8.33012 9.02528 9.24935 9.81181 10.51174 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.005196 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.564477 B = 5387.505624 C = 6324.244667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.425 5.425 3 C -0.293 4.293 4 H 0.111 0.889 5 C 0.028 3.972 6 N -0.877 5.877 7 Si 0.934 3.066 8 H -0.265 1.265 9 H -0.278 1.278 10 H -0.280 1.280 11 C 0.466 3.534 12 O -0.574 6.574 13 C -0.123 4.123 14 C -0.029 4.029 15 C -0.103 4.103 16 C -0.087 4.087 17 C -0.123 4.123 18 C -0.102 4.102 19 C -0.093 4.093 20 C 0.141 3.859 21 N -0.479 5.479 22 C 0.241 3.759 23 Cl -0.008 7.008 24 H 0.026 0.974 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.269 0.731 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 -11.901 1.856 13.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.141 5.141 3 C -0.421 4.421 4 H 0.128 0.872 5 C -0.175 4.175 6 N -0.517 5.517 7 Si 0.760 3.240 8 H -0.189 1.189 9 H -0.204 1.204 10 H -0.206 1.206 11 C 0.254 3.746 12 O -0.459 6.459 13 C -0.129 4.129 14 C -0.056 4.056 15 C -0.106 4.106 16 C -0.106 4.106 17 C -0.141 4.141 18 C -0.122 4.122 19 C -0.111 4.111 20 C 0.019 3.981 21 N -0.190 5.190 22 C 0.061 3.939 23 Cl 0.021 6.979 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.169 0.831 29 H 0.151 0.849 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.294 -12.293 1.107 13.855 hybrid contribution 0.027 1.408 0.398 1.464 sum -6.266 -10.885 1.505 12.650 Atomic orbital electron populations 1.22127 0.80195 0.97065 1.04992 1.43655 1.06212 1.04624 1.59633 1.19945 0.94333 0.81876 1.45936 0.87174 1.25433 0.95830 1.00020 0.96195 1.70139 1.06212 1.27617 1.47713 0.85729 0.79926 0.80333 0.78035 1.18935 1.20408 1.20564 1.17292 0.87265 0.82305 0.87760 1.90660 1.12618 1.86035 1.56632 1.20954 0.98234 0.97974 0.95782 1.21968 0.91881 0.94588 0.97160 1.18822 0.98825 0.95406 0.97506 1.21036 0.94601 0.96936 0.97996 1.20880 1.00309 0.94432 0.98495 1.20872 0.97065 0.99768 0.94538 1.20748 0.95750 0.94721 0.99928 1.18681 0.93452 0.94915 0.91056 1.67254 1.07831 1.16747 1.27141 1.21835 0.91512 0.90100 0.90413 1.98425 1.50094 1.92520 1.56884 0.95562 0.91901 0.89399 0.92043 0.83069 0.84942 0.85532 0.85379 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.21 8.19 59.85 0.49 2.70 16 2 N -0.43 -10.72 3.02 -123.37 -0.37 -11.10 16 3 C -0.29 -7.90 9.54 -15.01 -0.14 -8.04 16 4 H 0.11 3.11 7.19 -52.48 -0.38 2.73 16 5 C 0.03 0.71 5.45 -17.45 -0.10 0.62 16 6 N -0.88 -22.01 9.49 55.50 0.53 -21.48 16 7 Si 0.93 20.04 29.56 -169.99 -5.02 15.01 16 8 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 C 0.47 11.49 6.47 -12.45 -0.08 11.41 16 12 O -0.57 -15.83 15.85 5.27 0.08 -15.75 16 13 C -0.12 -2.55 4.82 -104.80 -0.50 -3.05 16 14 C -0.03 -0.50 7.30 -38.41 -0.28 -0.78 16 15 C -0.10 -1.58 5.74 -106.81 -0.61 -2.20 16 16 C -0.09 -1.02 9.77 -39.46 -0.39 -1.40 16 17 C -0.12 -1.21 9.96 -39.93 -0.40 -1.61 16 18 C -0.10 -1.02 9.94 -39.93 -0.40 -1.42 16 19 C -0.09 -1.17 9.97 -39.48 -0.39 -1.56 16 20 C 0.14 2.27 6.61 -84.78 -0.56 1.71 16 21 N -0.48 -8.83 10.27 -7.79 -0.08 -8.91 16 22 C 0.24 4.87 7.30 -16.97 -0.12 4.74 16 23 Cl -0.01 -0.16 27.54 -51.86 -1.43 -1.59 16 24 H 0.03 0.51 4.60 -51.93 -0.24 0.27 16 25 H 0.06 1.41 7.55 -51.93 -0.39 1.02 16 26 H 0.09 2.10 6.50 -51.93 -0.34 1.77 16 27 H 0.27 6.36 8.31 -40.82 -0.34 6.03 16 28 H 0.15 2.36 7.57 -52.49 -0.40 1.96 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 292.06 15.07 4.40 4.40 Total: -1.00 -30.12 292.06 -7.95 -38.07 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -2.57 Total: 0.22 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.48 Total: 1.13 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.07 Total: -41.49 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.08 Total: -15.75 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.43 Total: -1.59 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.12 -7.95 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152405677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.628 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds