Wall clock time and date at job start Tue Mar 31 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36855 * 120.00241 * 2 1 4 4 H 1.08008 * 119.99951 * 171.52033 * 3 2 1 5 5 C 1.39056 * 120.00384 * 351.51746 * 3 2 1 6 6 N 1.31362 * 119.99445 * 7.73674 * 5 3 2 7 7 Si 1.86793 * 120.00268 * 187.74137 * 5 3 2 8 8 H 1.48495 * 109.47311 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47108 * 120.00035 * 7 5 3 10 10 H 1.48503 * 109.46860 * 239.99584 * 7 5 3 11 11 C 1.34782 * 119.99755 * 179.97438 * 2 1 3 12 12 O 1.21609 * 119.99880 * 183.78568 * 11 2 1 13 13 C 1.47580 * 119.99938 * 3.79669 * 11 2 1 14 14 C 1.39100 * 120.28029 * 303.53430 * 13 11 2 15 15 C 1.40491 * 117.98299 * 179.73078 * 14 13 11 16 16 C 1.40560 * 121.19185 * 180.27664 * 15 14 13 17 17 C 1.36149 * 119.61806 * 180.02562 * 16 15 14 18 18 C 1.39328 * 120.83357 * 359.96221 * 17 16 15 19 19 C 1.36148 * 121.09506 * 0.02562 * 18 17 16 20 20 C 1.40514 * 119.81903 * 0.02562 * 19 18 17 21 21 N 1.33821 * 120.79435 * 180.02562 * 20 19 18 22 22 C 1.30939 * 121.71527 * 179.97438 * 21 20 19 23 23 Cl 1.73598 * 119.25450 * 180.02562 * 22 21 20 24 24 H 1.09003 * 109.47443 * 176.83073 * 1 2 3 25 25 H 1.08998 * 109.47144 * 296.83769 * 1 2 3 26 26 H 1.09001 * 109.46815 * 56.83647 * 1 2 3 27 27 H 0.96998 * 119.99695 * 180.02562 * 6 5 3 28 28 H 1.07994 * 121.01120 * 0.02562 * 14 13 11 29 29 H 1.07997 * 120.19046 * 359.95052 * 16 15 14 30 30 H 1.08000 * 119.58247 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.45531 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.08822 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1852 0.0000 4 1 3.2205 1.1902 0.1379 5 6 1.4656 2.3829 -0.1776 6 7 0.1521 2.3932 -0.1932 7 14 2.4148 3.9770 -0.3942 8 1 3.8720 3.6970 -0.3382 9 1 2.0762 4.5801 -1.7084 10 1 2.0505 4.9215 0.6923 11 6 2.1388 -1.1673 0.0005 12 8 3.3529 -1.1684 0.0701 13 6 1.4033 -2.4439 -0.0835 14 6 0.4223 -2.7512 0.8535 15 6 -0.2518 -3.9771 0.7244 16 6 -1.2588 -4.3530 1.6300 17 6 -1.8910 -5.5489 1.4750 18 6 -1.5530 -6.4050 0.4291 19 6 -0.5827 -6.0724 -0.4663 20 6 0.0941 -4.8475 -0.3403 21 7 1.0506 -4.5007 -1.2096 22 6 1.6924 -3.3638 -1.1095 23 17 2.9216 -2.9782 -2.2731 24 1 -0.3634 -1.0261 -0.0568 25 1 -0.3633 0.4639 0.9170 26 1 -0.3633 0.5622 -0.8603 27 1 -0.3249 3.2286 -0.3175 28 1 0.1826 -2.0661 1.6532 29 1 -1.5287 -3.6977 2.4449 30 1 -2.6644 -5.8374 2.1715 31 1 -2.0685 -7.3485 0.3273 32 1 -0.3335 -6.7486 -1.2706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152405677.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:08 Heat of formation + Delta-G solvation = 18.169825 kcal Electronic energy + Delta-G solvation = -20166.045491 eV Core-core repulsion = 16924.605976 eV Total energy + Delta-G solvation = -3241.439515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.05995 -40.28155 -38.32748 -37.26295 -36.75611 -34.86230 -33.51907 -31.60051 -31.08266 -28.36766 -26.85059 -25.40811 -24.85020 -23.19952 -21.62981 -19.49126 -19.06781 -18.53373 -18.20223 -17.27926 -16.41563 -16.15484 -15.99586 -15.64066 -15.52622 -15.22337 -15.00381 -14.51952 -14.22515 -13.72814 -13.63464 -13.47303 -12.92853 -12.75521 -12.73114 -12.52006 -12.39715 -12.24162 -12.13038 -12.04923 -11.45962 -11.06539 -11.04310 -10.42715 -9.96944 -9.73552 -9.27080 -8.32167 -5.94941 -0.82272 -0.51693 0.67523 0.85072 1.33054 1.41304 1.55084 1.61294 2.01105 2.23063 2.81263 2.94994 3.07628 3.29383 3.49631 3.61308 3.68172 3.99175 4.07013 4.28403 4.34595 4.49346 4.62838 4.68467 4.84799 5.04542 5.08669 5.30139 5.37581 5.38617 5.45756 5.46838 5.83910 5.95614 6.39332 6.48333 7.07486 7.34350 7.90411 8.59006 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.005196 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.564477 B = 5387.505624 C = 6324.244667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.440 5.440 3 C -0.337 4.337 4 H 0.082 0.918 5 C 0.001 3.999 6 N -0.888 5.888 7 Si 0.994 3.006 8 H -0.275 1.275 9 H -0.270 1.270 10 H -0.266 1.266 11 C 0.469 3.531 12 O -0.616 6.616 13 C -0.160 4.160 14 C -0.012 4.012 15 C -0.114 4.114 16 C -0.093 4.093 17 C -0.103 4.103 18 C -0.074 4.074 19 C -0.113 4.113 20 C 0.121 3.879 21 N -0.485 5.485 22 C 0.220 3.780 23 Cl -0.027 7.027 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.275 0.725 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -13.995 3.291 17.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.156 5.156 3 C -0.465 4.465 4 H 0.100 0.900 5 C -0.201 4.201 6 N -0.527 5.527 7 Si 0.817 3.183 8 H -0.200 1.200 9 H -0.195 1.195 10 H -0.191 1.191 11 C 0.258 3.742 12 O -0.504 6.504 13 C -0.166 4.166 14 C -0.039 4.039 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.093 4.093 19 C -0.132 4.132 20 C 0.000 4.000 21 N -0.196 5.196 22 C 0.041 3.959 23 Cl 0.002 6.998 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.182 0.818 29 H 0.177 0.823 30 H 0.189 0.811 31 H 0.190 0.810 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.643 -14.405 2.544 17.520 hybrid contribution 0.805 1.715 0.073 1.896 sum -8.838 -12.689 2.616 15.683 Atomic orbital electron populations 1.21952 0.78716 0.98296 1.03709 1.43804 1.07183 1.04452 1.60197 1.19827 0.93610 0.83591 1.49425 0.89963 1.26116 0.96794 1.02126 0.95069 1.70208 1.06760 1.28620 1.47108 0.84859 0.78064 0.76818 0.78532 1.19972 1.19507 1.19073 1.17849 0.87022 0.83417 0.85954 1.90597 1.14710 1.87109 1.57963 1.20587 1.00817 0.96747 0.98488 1.22176 0.90170 0.95591 0.95949 1.19040 0.99787 0.94388 0.98345 1.21393 0.93499 0.98425 0.97807 1.21474 0.99616 0.92795 0.98211 1.21463 0.94611 1.00869 0.92386 1.21021 0.96744 0.93714 1.01679 1.19300 0.93256 0.96491 0.90989 1.67247 1.08433 1.15850 1.28055 1.21715 0.92421 0.91027 0.90783 1.98399 1.51080 1.92792 1.57548 0.92933 0.92375 0.91324 0.91405 0.81775 0.82349 0.81075 0.81005 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.27 8.19 127.77 1.05 6.32 16 2 N -0.44 -23.27 3.02 -662.48 -2.00 -25.27 16 3 C -0.34 -19.11 9.54 84.11 0.80 -18.31 16 4 H 0.08 5.00 7.19 -2.91 -0.02 4.97 16 5 C 0.00 0.05 5.45 84.96 0.46 0.51 16 6 N -0.89 -45.04 9.49 21.68 0.21 -44.84 16 7 Si 0.99 41.83 29.56 68.60 2.03 43.86 16 8 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 9 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 11 C 0.47 24.38 6.47 86.71 0.56 24.94 16 12 O -0.62 -36.29 15.85 -4.06 -0.06 -36.35 16 13 C -0.16 -6.86 4.82 -19.98 -0.10 -6.95 16 14 C -0.01 -0.42 7.30 23.03 0.17 -0.25 16 15 C -0.11 -3.22 5.74 -21.28 -0.12 -3.34 16 16 C -0.09 -1.73 9.77 22.35 0.22 -1.51 16 17 C -0.10 -1.33 9.96 22.05 0.22 -1.11 16 18 C -0.07 -1.01 9.94 22.05 0.22 -0.79 16 19 C -0.11 -2.43 9.97 22.34 0.22 -2.21 16 20 C 0.12 3.70 6.61 40.28 0.27 3.97 16 21 N -0.48 -18.00 10.27 -178.55 -1.83 -19.83 16 22 C 0.22 9.21 7.30 85.45 0.62 9.84 16 23 Cl -0.03 -1.14 27.54 -2.72 -0.07 -1.21 16 24 H 0.05 2.06 4.60 -2.39 -0.01 2.05 16 25 H 0.06 2.64 7.55 -2.39 -0.02 2.62 16 26 H 0.07 3.37 6.50 -2.39 -0.02 3.36 16 27 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 28 H 0.16 4.98 7.57 -2.91 -0.02 4.95 16 29 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.98 292.06 4.02 -66.96 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.17 Total: 5.57 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 4.59 Total: 11.11 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -3.63 Total: -89.93 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.06 Total: -36.35 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal Total: -70.98 4.02 -66.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152405677.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.129 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds