Wall clock time and date at job start Tue Mar 31 2020 06:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36823 * 120.00030 * 2 1 4 4 H 1.07997 * 120.00064 * 162.31741 * 3 2 1 5 5 C 1.39085 * 120.00050 * 342.31883 * 3 2 1 6 6 N 1.31345 * 119.99962 * 342.73944 * 5 3 2 7 7 Si 1.86798 * 119.99973 * 162.73469 * 5 3 2 8 8 H 1.48506 * 109.47004 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47055 * 119.99936 * 7 5 3 10 10 H 1.48495 * 109.47444 * 240.00309 * 7 5 3 11 11 C 1.34769 * 119.99886 * 180.02562 * 2 1 3 12 12 O 1.21594 * 119.99774 * 184.35008 * 11 2 1 13 13 C 1.47742 * 120.00148 * 4.34228 * 11 2 1 14 14 C 1.40629 * 119.72039 * 212.90427 * 13 11 2 15 15 C 1.35800 * 120.72132 * 179.97438 * 14 13 11 16 16 C 1.40537 * 119.99716 * 0.02562 * 15 14 13 17 17 C 1.40935 * 121.13029 * 179.97438 * 16 15 14 18 18 Cl 1.73597 * 120.91093 * 0.05196 * 17 16 15 19 19 C 1.36737 * 118.17516 * 180.02562 * 17 16 15 20 20 C 1.39302 * 119.92972 * 0.02562 * 19 17 16 21 21 N 1.31067 * 121.73375 * 359.97438 * 20 19 17 22 22 C 1.33778 * 121.37715 * 0.02562 * 21 20 19 23 23 C 1.38515 * 119.71845 * 32.93086 * 13 11 2 24 24 H 1.08995 * 109.47160 * 209.85375 * 1 2 3 25 25 H 1.09002 * 109.46751 * 329.85453 * 1 2 3 26 26 H 1.09005 * 109.47174 * 89.85050 * 1 2 3 27 27 H 0.97002 * 119.99697 * 180.02562 * 6 5 3 28 28 H 1.08002 * 119.63713 * 359.97438 * 14 13 11 29 29 H 1.08001 * 120.00194 * 179.97438 * 15 14 13 30 30 H 1.08001 * 120.03481 * 179.97438 * 19 17 16 31 31 H 1.08007 * 119.13314 * 179.71652 * 20 19 17 32 32 H 1.08003 * 120.23460 * 359.97438 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1849 0.0000 4 1 3.1909 1.2070 0.2841 5 6 1.5030 2.3610 -0.3658 6 7 0.3682 2.3091 -1.0251 7 14 2.2491 4.0143 0.0806 8 1 3.5211 3.8008 0.8167 9 1 2.5187 4.7865 -1.1589 10 1 1.3012 4.7699 0.9382 11 6 2.1389 -1.1671 -0.0005 12 8 3.3522 -1.1687 0.0794 13 6 1.4033 -2.4448 -0.0980 14 6 1.8995 -3.5865 0.5562 15 6 1.2396 -4.7710 0.4806 16 6 0.0475 -4.8654 -0.2577 17 6 -0.6563 -6.0827 -0.3525 18 17 -0.0758 -7.5128 0.4422 19 6 -1.8093 -6.1063 -1.0872 20 6 -2.2564 -4.9466 -1.7163 21 7 -1.5993 -3.8162 -1.6261 22 6 -0.4646 -3.7243 -0.9233 23 6 0.2312 -2.5079 -0.8333 24 1 -0.3633 -0.8912 0.5115 25 1 -0.3633 0.8887 0.5161 26 1 -0.3634 0.0027 -1.0277 27 1 -0.0822 3.1293 -1.2805 28 1 2.8153 -3.5206 1.1248 29 1 1.6313 -5.6407 0.9873 30 1 -2.3724 -7.0232 -1.1802 31 1 -3.1663 -4.9809 -2.2972 32 1 -0.1450 -1.6278 -1.3336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153341519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:14 Heat of formation + Delta-G solvation = 15.982738 kcal Electronic energy + Delta-G solvation = -19948.376138 eV Core-core repulsion = 16706.841784 eV Total energy + Delta-G solvation = -3241.534354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.04220 -40.53661 -37.92744 -37.74557 -36.83463 -34.43960 -33.64534 -31.79536 -31.17242 -28.34021 -27.13611 -25.40170 -24.85129 -23.20848 -21.75542 -19.18270 -19.07962 -18.48824 -18.22863 -17.37079 -16.56957 -16.19082 -16.02435 -15.85828 -15.57565 -15.14751 -14.76670 -14.63271 -14.38267 -13.84521 -13.66375 -13.46711 -13.24645 -12.98917 -12.84039 -12.77443 -12.46639 -12.35980 -12.11697 -12.00756 -11.11453 -11.05523 -10.71713 -10.53001 -9.93972 -9.83740 -9.32070 -8.46860 -6.02552 -0.88156 -0.43561 0.67559 0.80851 1.31923 1.40897 1.55516 1.57275 2.21142 2.22368 2.85724 2.90882 3.02489 3.25391 3.48378 3.50392 3.71655 3.96439 4.01674 4.19685 4.35628 4.40976 4.48910 4.69859 4.77916 4.81472 4.89920 5.11820 5.22882 5.28471 5.33706 5.37791 5.63617 5.96702 6.35258 6.81321 7.03123 7.28841 7.87206 8.56168 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.004071 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.080580 B = 6876.212693 C = 7618.902276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.438 5.438 3 C -0.351 4.351 4 H 0.080 0.920 5 C 0.003 3.997 6 N -0.882 5.882 7 Si 0.995 3.005 8 H -0.272 1.272 9 H -0.272 1.272 10 H -0.262 1.262 11 C 0.456 3.544 12 O -0.631 6.631 13 C -0.090 4.090 14 C -0.080 4.080 15 C -0.091 4.091 16 C -0.101 4.101 17 C 0.011 3.989 18 Cl -0.032 7.032 19 C -0.147 4.147 20 C 0.146 3.854 21 N -0.493 5.493 22 C 0.121 3.879 23 C -0.081 4.081 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.280 0.720 28 H 0.135 0.865 29 H 0.162 0.838 30 H 0.189 0.811 31 H 0.210 0.790 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.704 -17.357 0.939 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.153 5.153 3 C -0.479 4.479 4 H 0.098 0.902 5 C -0.201 4.201 6 N -0.519 5.519 7 Si 0.817 3.183 8 H -0.197 1.197 9 H -0.197 1.197 10 H -0.187 1.187 11 C 0.247 3.753 12 O -0.521 6.521 13 C -0.095 4.095 14 C -0.099 4.099 15 C -0.110 4.110 16 C -0.104 4.104 17 C -0.024 4.024 18 Cl -0.003 7.003 19 C -0.167 4.167 20 C -0.027 4.027 21 N -0.202 5.202 22 C 0.001 3.999 23 C -0.101 4.101 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.179 0.821 30 H 0.206 0.794 31 H 0.227 0.773 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.465 -16.456 0.591 18.993 hybrid contribution 0.924 0.321 0.515 1.105 sum -8.541 -16.135 1.106 18.290 Atomic orbital electron populations 1.21798 0.79246 1.00281 1.01041 1.43776 1.06884 1.04810 1.59809 1.19782 0.97237 0.84578 1.46290 0.90215 1.26179 0.96754 1.02923 0.94196 1.70073 1.17827 1.30639 1.33363 0.84866 0.78481 0.76420 0.78490 1.19671 1.19699 1.18676 1.18542 0.87115 0.84346 0.85253 1.90552 1.15208 1.87585 1.58764 1.20054 0.95212 0.94550 0.99716 1.20958 0.99936 0.91196 0.97821 1.21064 0.93476 0.98130 0.98300 1.18824 0.97538 0.93307 1.00779 1.21192 0.95985 0.87642 0.97558 1.98391 1.88425 1.35219 1.78284 1.22334 0.95148 1.02551 0.96668 1.23768 0.98868 0.85807 0.94268 1.68058 1.06317 1.29299 1.16531 1.18630 0.93018 0.92338 0.95908 1.21680 0.93068 0.97564 0.97754 0.92358 0.91928 0.92574 0.91007 0.84747 0.82061 0.79427 0.77316 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.57 7.07 127.77 0.90 6.47 16 2 N -0.44 -23.77 3.02 -662.32 -2.00 -25.77 16 3 C -0.35 -20.36 9.36 84.12 0.79 -19.57 16 4 H 0.08 4.93 7.33 -2.91 -0.02 4.91 16 5 C 0.00 0.17 5.00 84.97 0.42 0.60 16 6 N -0.88 -46.25 10.67 21.69 0.23 -46.02 16 7 Si 1.00 41.87 29.59 68.60 2.03 43.90 16 8 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 11 C 0.46 24.31 7.33 86.76 0.64 24.95 16 12 O -0.63 -37.93 16.39 -4.01 -0.07 -38.00 16 13 C -0.09 -3.84 5.26 -20.11 -0.11 -3.95 16 14 C -0.08 -2.87 9.50 22.29 0.21 -2.65 16 15 C -0.09 -2.60 9.43 22.26 0.21 -2.39 16 16 C -0.10 -2.86 5.75 -21.21 -0.12 -2.98 16 17 C 0.01 0.23 6.36 22.58 0.14 0.38 16 18 Cl -0.03 -0.56 27.63 -2.72 -0.08 -0.63 16 19 C -0.15 -2.28 9.84 22.17 0.22 -2.06 16 20 C 0.15 2.67 11.15 85.06 0.95 3.62 16 21 N -0.49 -14.17 10.34 -188.74 -1.95 -16.12 16 22 C 0.12 3.96 6.60 40.23 0.27 4.22 16 23 C -0.08 -3.14 7.58 22.87 0.17 -2.97 16 24 H 0.06 2.41 5.91 -2.39 -0.01 2.40 16 25 H 0.06 3.03 6.74 -2.39 -0.02 3.02 16 26 H 0.06 2.67 6.34 -2.38 -0.02 2.66 16 27 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 28 H 0.13 4.75 7.94 -2.91 -0.02 4.73 16 29 H 0.16 3.59 7.03 -2.91 -0.02 3.57 16 30 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.14 5.86 5.04 -2.91 -0.01 5.84 16 Total: -1.00 -70.84 289.94 4.05 -66.80 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.18 Total: 12.17 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 4.69 Total: 3.67 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -3.72 Total: -87.91 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.07 Total: -38.00 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.63 kcal Total: -70.84 4.05 -66.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153341519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.779 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds