Wall clock time and date at job start Tue Mar 31 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43190 * 120.00173 * 21.61961 * 3 2 1 5 5 N 3.51035 * 140.68653 * 21.61667 * 2 1 3 6 6 C 1.41133 * 119.99505 * 201.61481 * 3 2 1 7 7 C 1.38935 * 120.00187 * 5.27228 * 6 3 2 8 8 H 1.07998 * 120.00269 * 338.86361 * 7 6 3 9 9 C 1.40861 * 120.00116 * 158.85965 * 7 6 3 10 10 N 1.30326 * 120.00036 * 350.88662 * 9 7 6 11 11 Si 1.86803 * 120.00343 * 170.87761 * 9 7 6 12 12 H 1.48500 * 109.46550 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47070 * 120.00161 * 11 9 7 14 14 H 1.48497 * 109.47288 * 240.00735 * 11 9 7 15 15 N 1.38452 * 119.99765 * 185.27303 * 6 3 2 16 16 C 1.38753 * 120.00033 * 119.82883 * 15 6 3 17 17 C 1.39545 * 120.47803 * 353.81076 * 16 15 6 18 18 C 1.38330 * 118.48017 * 179.97438 * 17 16 15 19 19 Cl 1.73602 * 120.36961 * 180.02562 * 18 17 16 20 20 N 1.32601 * 119.25558 * 359.97438 * 18 17 16 21 21 C 1.32473 * 120.90550 * 0.02562 * 20 18 17 22 22 N 1.38396 * 119.17309 * 179.97438 * 21 20 18 23 23 N 1.32457 * 121.65742 * 0.27438 * 21 20 18 24 24 H 0.96997 * 120.00397 * 185.04158 * 10 9 7 25 25 H 0.96998 * 119.99548 * 299.83809 * 15 6 3 26 26 H 1.08005 * 120.75573 * 0.02562 * 17 16 15 27 27 H 0.96998 * 119.99657 * 359.97438 * 22 21 20 28 28 H 0.96994 * 119.99820 * 179.72831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.1518 -0.4569 5 7 3.8519 -2.0676 -0.8193 6 6 3.2730 1.1373 0.4503 7 6 2.5822 2.2125 0.9953 8 1 1.5331 2.3470 0.7769 9 6 3.2501 3.1271 1.8329 10 7 4.4616 2.8728 2.2405 11 14 2.3995 4.7048 2.3592 12 1 1.0393 4.7554 1.7656 13 1 2.2945 4.7402 3.8401 14 1 3.1883 5.8725 1.8907 15 7 4.6531 1.1809 0.3488 16 6 5.2624 2.1746 -0.4040 17 6 4.4947 3.0562 -1.1661 18 6 5.1449 4.0316 -1.9005 19 17 4.2381 5.1545 -2.8652 20 7 6.4685 4.0999 -1.8586 21 6 7.1709 3.2488 -1.1257 22 7 8.5509 3.3523 -1.1085 23 7 6.5860 2.2975 -0.4134 24 1 4.8943 3.4653 2.8750 25 1 5.1941 0.5167 0.8038 26 1 3.4175 2.9792 -1.1815 27 1 8.9920 4.0415 -1.6293 28 1 9.0766 2.7379 -0.5730 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158211414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:47 Heat of formation + Delta-G solvation = 106.753251 kcal Electronic energy + Delta-G solvation = -19759.516085 eV Core-core repulsion = 16450.670244 eV Total energy + Delta-G solvation = -3308.845841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.038 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52362 -37.87717 -36.54393 -35.52415 -34.81298 -34.39371 -33.73061 -32.48832 -30.17430 -29.12598 -27.27630 -23.56976 -23.28692 -21.39665 -19.28600 -18.37930 -17.70117 -17.13330 -16.45958 -15.83849 -15.39483 -14.95466 -14.72353 -14.62785 -14.06896 -13.78594 -12.90122 -12.69604 -12.40813 -12.23961 -11.95530 -11.82166 -11.77059 -11.62690 -11.44143 -11.12962 -11.02422 -11.00719 -10.58599 -10.51331 -10.18330 -9.95276 -8.88862 -8.80085 -8.15334 -7.88543 -7.25863 -5.57219 1.52138 1.67178 1.96726 2.20713 2.64842 2.74176 2.77941 3.29574 3.33924 3.74325 3.80610 3.98195 4.08579 4.24279 4.39013 5.05321 5.08784 5.26358 5.49256 5.81792 5.88720 6.08329 6.17305 6.39137 6.89874 6.99824 7.25271 7.34955 7.47862 7.56840 7.67299 8.02818 8.27426 8.81351 8.88286 9.03505 9.07125 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.007578 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.260941 B = 3693.836889 C = 4406.189636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.325 3.675 3 C -0.304 4.304 4 C 0.307 3.693 5 N -0.528 5.528 6 C 0.373 3.627 7 C -0.370 4.370 8 H 0.118 0.882 9 C 0.069 3.931 10 N -0.715 5.715 11 Si 0.921 3.079 12 H -0.244 1.244 13 H -0.261 1.261 14 H -0.259 1.259 15 N -0.619 5.619 16 C 0.526 3.474 17 C -0.304 4.304 18 C 0.277 3.723 19 Cl -0.034 7.034 20 N -0.617 5.617 21 C 0.614 3.386 22 N -0.825 5.825 23 N -0.618 5.618 24 H 0.304 0.696 25 H 0.411 0.589 26 H 0.159 0.841 27 H 0.411 0.589 28 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 9.193 -0.226 11.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.209 5.209 2 C 0.016 3.984 3 C -0.322 4.322 4 C -0.001 4.001 5 N -0.210 5.210 6 C 0.270 3.730 7 C -0.397 4.397 8 H 0.136 0.864 9 C -0.163 4.163 10 N -0.333 5.333 11 Si 0.742 3.258 12 H -0.166 1.166 13 H -0.185 1.185 14 H -0.184 1.184 15 N -0.242 5.242 16 C 0.279 3.721 17 C -0.336 4.336 18 C 0.108 3.892 19 Cl -0.006 7.006 20 N -0.349 5.349 21 C 0.253 3.747 22 N -0.375 5.375 23 N -0.352 5.352 24 H 0.116 0.884 25 H 0.249 0.751 26 H 0.176 0.824 27 H 0.241 0.759 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.702 8.033 -0.776 10.490 hybrid contribution -0.218 0.883 0.682 1.137 sum 6.484 8.916 -0.094 11.025 Atomic orbital electron populations 1.81081 1.12119 1.10088 1.17580 1.24599 0.91195 0.91977 0.90609 1.12808 0.83110 0.94574 1.41736 1.25182 0.92570 0.91804 0.90532 1.81114 1.09654 1.12112 1.18115 1.16721 0.79133 0.90704 0.86489 1.20410 0.98916 1.03952 1.16423 0.86450 1.26548 0.94426 1.00454 0.94915 1.69485 1.10901 1.35100 1.17788 0.85928 0.81439 0.78600 0.79856 1.16622 1.18536 1.18366 1.41153 1.05064 1.28447 1.49544 1.17503 0.86183 0.84398 0.83978 1.21755 1.03446 1.01357 1.07016 1.21011 0.88417 0.89367 0.90383 1.98384 1.71247 1.61049 1.69872 1.66972 1.06922 1.31696 1.29274 1.18476 0.86780 0.84369 0.85100 1.41566 1.01175 1.39796 1.54938 1.67181 1.10658 1.27251 1.30107 0.88406 0.75115 0.82373 0.75868 0.75681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.95 18.54 41.84 0.78 -11.17 15 2 C 0.32 7.04 13.90 -22.47 -0.31 6.73 15 3 C -0.30 -6.30 5.88 -104.95 -0.62 -6.92 15 4 C 0.31 6.68 14.81 -22.46 -0.33 6.35 15 5 N -0.53 -12.09 18.54 41.86 0.78 -11.32 15 6 C 0.37 7.29 5.00 -83.52 -0.42 6.87 15 7 C -0.37 -7.03 6.91 -38.33 -0.26 -7.29 15 8 H 0.12 2.25 7.01 -52.49 -0.37 1.88 15 9 C 0.07 1.23 4.79 -17.20 -0.08 1.15 15 10 N -0.71 -13.08 11.00 55.60 0.61 -12.47 15 11 Si 0.92 14.29 29.58 -169.99 -5.03 9.26 15 12 H -0.24 -3.82 7.11 56.52 0.40 -3.42 15 13 H -0.26 -4.00 7.11 56.52 0.40 -3.60 15 14 H -0.26 -4.11 7.11 56.52 0.40 -3.71 15 15 N -0.62 -11.68 3.33 -9.61 -0.03 -11.71 15 16 C 0.53 9.92 6.20 -154.65 -0.96 8.96 15 17 C -0.30 -5.59 8.45 -39.06 -0.33 -5.92 15 18 C 0.28 4.87 7.32 -17.19 -0.13 4.74 15 19 Cl -0.03 -0.51 29.15 -51.86 -1.51 -2.02 15 20 N -0.62 -10.73 10.45 -11.11 -0.12 -10.85 15 21 C 0.61 10.23 8.67 -322.90 -2.80 7.42 15 22 N -0.82 -9.81 9.07 29.75 0.27 -9.54 15 23 N -0.62 -11.21 10.49 -13.14 -0.14 -11.35 15 24 H 0.30 5.15 8.29 -40.82 -0.34 4.81 15 25 H 0.41 7.67 8.92 -40.82 -0.36 7.31 15 26 H 0.16 2.89 6.30 -52.48 -0.33 2.56 15 27 H 0.41 3.97 8.94 -40.82 -0.37 3.60 15 28 H 0.41 4.15 8.94 -40.82 -0.37 3.79 15 LS Contribution 291.79 15.07 4.40 4.40 Total: -1.00 -24.30 291.79 -7.16 -31.47 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.93 Total: 13.22 kcal Atomic # 6 Polarization: 28.34 SS G_CDS: -6.24 Total: 22.09 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: 2.15 Total: -78.41 kcal Atomic # 14 Polarization: 14.29 SS G_CDS: -5.03 Total: 9.26 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.51 Total: -2.02 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -24.30 -7.16 -31.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.219 kcal (2) G-P(sol) polarization free energy of solvation -24.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds