Wall clock time and date at job start Tue Mar 31 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43190 * 120.00173 * 21.61961 * 3 2 1 5 5 N 3.51035 * 140.68653 * 21.61667 * 2 1 3 6 6 C 1.41133 * 119.99505 * 201.61481 * 3 2 1 7 7 C 1.38935 * 120.00187 * 5.27228 * 6 3 2 8 8 H 1.07998 * 120.00269 * 338.86361 * 7 6 3 9 9 C 1.40861 * 120.00116 * 158.85965 * 7 6 3 10 10 N 1.30326 * 120.00036 * 350.88662 * 9 7 6 11 11 Si 1.86803 * 120.00343 * 170.87761 * 9 7 6 12 12 H 1.48500 * 109.46550 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47070 * 120.00161 * 11 9 7 14 14 H 1.48497 * 109.47288 * 240.00735 * 11 9 7 15 15 N 1.38452 * 119.99765 * 185.27303 * 6 3 2 16 16 C 1.38753 * 120.00033 * 119.82883 * 15 6 3 17 17 C 1.39545 * 120.47803 * 353.81076 * 16 15 6 18 18 C 1.38330 * 118.48017 * 179.97438 * 17 16 15 19 19 Cl 1.73602 * 120.36961 * 180.02562 * 18 17 16 20 20 N 1.32601 * 119.25558 * 359.97438 * 18 17 16 21 21 C 1.32473 * 120.90550 * 0.02562 * 20 18 17 22 22 N 1.38396 * 119.17309 * 179.97438 * 21 20 18 23 23 N 1.32457 * 121.65742 * 0.27438 * 21 20 18 24 24 H 0.96997 * 120.00397 * 185.04158 * 10 9 7 25 25 H 0.96998 * 119.99548 * 299.83809 * 15 6 3 26 26 H 1.08005 * 120.75573 * 0.02562 * 17 16 15 27 27 H 0.96998 * 119.99657 * 359.97438 * 22 21 20 28 28 H 0.96994 * 119.99820 * 179.72831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.1518 -0.4569 5 7 3.8519 -2.0676 -0.8193 6 6 3.2730 1.1373 0.4503 7 6 2.5822 2.2125 0.9953 8 1 1.5331 2.3470 0.7769 9 6 3.2501 3.1271 1.8329 10 7 4.4616 2.8728 2.2405 11 14 2.3995 4.7048 2.3592 12 1 1.0393 4.7554 1.7656 13 1 2.2945 4.7402 3.8401 14 1 3.1883 5.8725 1.8907 15 7 4.6531 1.1809 0.3488 16 6 5.2624 2.1746 -0.4040 17 6 4.4947 3.0562 -1.1661 18 6 5.1449 4.0316 -1.9005 19 17 4.2381 5.1545 -2.8652 20 7 6.4685 4.0999 -1.8586 21 6 7.1709 3.2488 -1.1257 22 7 8.5509 3.3523 -1.1085 23 7 6.5860 2.2975 -0.4134 24 1 4.8943 3.4653 2.8750 25 1 5.1941 0.5167 0.8038 26 1 3.4175 2.9792 -1.1815 27 1 8.9920 4.0415 -1.6293 28 1 9.0766 2.7379 -0.5730 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158211414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:46 Heat of formation + Delta-G solvation = 94.528665 kcal Electronic energy + Delta-G solvation = -19760.046183 eV Core-core repulsion = 16450.670244 eV Total energy + Delta-G solvation = -3309.375939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.038 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.87295 -39.35111 -37.81962 -37.17225 -36.53595 -35.72999 -35.05326 -33.92398 -31.62592 -30.48759 -28.84012 -24.97687 -24.63037 -22.86430 -20.83218 -19.72609 -19.18409 -18.53047 -17.90978 -17.14042 -16.67986 -16.25811 -16.05645 -16.00889 -15.40872 -15.15483 -14.59033 -14.38135 -13.90314 -13.55909 -13.48689 -13.38726 -13.32856 -13.20623 -12.91149 -12.72276 -12.44672 -12.38601 -11.97398 -11.86184 -11.54598 -11.20291 -10.30339 -10.19124 -9.54473 -9.23750 -8.70475 -7.16795 0.14472 0.25787 0.66176 0.79926 1.36507 1.49833 1.54469 1.94431 2.05632 2.08384 2.24293 2.44895 2.57958 2.65190 3.01259 3.39621 3.68212 3.85550 3.97432 4.44580 4.55496 4.58319 4.64842 4.99634 5.35515 5.55922 5.85000 5.97587 6.13376 6.32414 6.39484 6.55289 6.87532 7.17761 7.34399 7.56088 7.65181 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.007578 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.260941 B = 3693.836889 C = 4406.189636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C 0.331 3.669 3 C -0.316 4.316 4 C 0.315 3.685 5 N -0.555 5.555 6 C 0.370 3.630 7 C -0.359 4.359 8 H 0.116 0.884 9 C 0.047 3.953 10 N -0.719 5.719 11 Si 0.970 3.030 12 H -0.246 1.246 13 H -0.254 1.254 14 H -0.261 1.261 15 N -0.619 5.619 16 C 0.517 3.483 17 C -0.320 4.320 18 C 0.274 3.726 19 Cl -0.014 7.014 20 N -0.622 5.622 21 C 0.604 3.396 22 N -0.801 5.801 23 N -0.629 5.629 24 H 0.313 0.687 25 H 0.409 0.591 26 H 0.155 0.845 27 H 0.424 0.576 28 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.415 10.890 0.163 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.233 5.233 2 C 0.024 3.976 3 C -0.335 4.335 4 C 0.009 3.991 5 N -0.238 5.238 6 C 0.266 3.734 7 C -0.386 4.386 8 H 0.134 0.866 9 C -0.185 4.185 10 N -0.337 5.337 11 Si 0.788 3.212 12 H -0.169 1.169 13 H -0.178 1.178 14 H -0.185 1.185 15 N -0.242 5.242 16 C 0.271 3.729 17 C -0.351 4.351 18 C 0.105 3.895 19 Cl 0.015 6.985 20 N -0.353 5.353 21 C 0.242 3.758 22 N -0.353 5.353 23 N -0.364 5.364 24 H 0.125 0.875 25 H 0.247 0.753 26 H 0.172 0.828 27 H 0.257 0.743 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.526 9.727 -0.393 12.304 hybrid contribution -0.337 0.497 0.577 0.833 sum 7.189 10.224 0.184 12.500 Atomic orbital electron populations 1.81071 1.12617 1.10778 1.18837 1.24714 0.91307 0.91459 0.90127 1.12807 0.82670 0.94862 1.43174 1.25319 0.92143 0.91643 0.90045 1.81102 1.10388 1.12838 1.19516 1.16683 0.79544 0.90523 0.86694 1.20588 0.98904 1.03761 1.15379 0.86599 1.27047 0.94792 1.01968 0.94647 1.69483 1.11260 1.35640 1.17296 0.85215 0.80401 0.75718 0.79824 1.16850 1.17770 1.18530 1.41069 1.04684 1.28672 1.49807 1.17632 0.86690 0.84489 0.84113 1.21734 1.03276 1.02127 1.08012 1.21215 0.88734 0.89423 0.90166 1.98386 1.70803 1.60154 1.69173 1.67103 1.06821 1.31891 1.29519 1.18896 0.88220 0.83942 0.84692 1.41561 0.99449 1.39903 1.54355 1.67216 1.10393 1.27938 1.30843 0.87496 0.75307 0.82772 0.74347 0.74439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -24.91 18.54 19.00 0.35 -24.56 15 2 C 0.33 14.37 13.90 88.33 1.23 15.60 15 3 C -0.32 -13.13 5.88 -20.08 -0.12 -13.25 15 4 C 0.31 13.80 14.81 88.32 1.31 15.11 15 5 N -0.56 -25.62 18.54 19.01 0.35 -25.27 15 6 C 0.37 14.32 5.00 38.97 0.19 14.51 15 7 C -0.36 -13.34 6.91 23.08 0.16 -13.18 15 8 H 0.12 4.33 7.01 -2.91 -0.02 4.31 15 9 C 0.05 1.61 4.79 85.56 0.41 2.02 15 10 N -0.72 -25.17 11.00 21.98 0.24 -24.93 15 11 Si 0.97 27.44 29.58 68.60 2.03 29.47 15 12 H -0.25 -7.04 7.11 99.48 0.71 -6.34 15 13 H -0.25 -6.91 7.11 99.48 0.71 -6.20 15 14 H -0.26 -7.47 7.11 99.48 0.71 -6.77 15 15 N -0.62 -23.14 3.33 -184.31 -0.61 -23.76 15 16 C 0.52 19.12 6.20 133.09 0.82 19.94 15 17 C -0.32 -11.48 8.45 22.61 0.19 -11.29 15 18 C 0.27 9.26 7.32 84.60 0.62 9.88 15 19 Cl -0.01 -0.39 29.15 -2.72 -0.08 -0.47 15 20 N -0.62 -20.54 10.45 -189.06 -1.98 -22.51 15 21 C 0.60 19.06 8.67 261.52 2.27 21.33 15 22 N -0.80 -17.20 9.07 -59.79 -0.54 -17.75 15 23 N -0.63 -22.09 10.49 -195.48 -2.05 -24.14 15 24 H 0.31 9.96 8.29 -92.71 -0.77 9.19 15 25 H 0.41 15.25 8.92 -92.71 -0.83 14.43 15 26 H 0.15 5.56 6.30 -2.91 -0.02 5.54 15 27 H 0.42 7.06 8.94 -92.71 -0.83 6.23 15 28 H 0.42 7.51 8.94 -92.71 -0.83 6.68 15 Total: -1.00 -49.79 291.79 3.63 -46.16 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -1.17 Total: 27.08 kcal Atomic # 6 Polarization: 53.59 SS G_CDS: 7.08 Total: 60.67 kcal Atomic # 7 Polarization: -158.68 SS G_CDS: -4.23 Total: -162.91 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: 2.03 Total: 29.47 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -49.79 3.63 -46.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158211414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.689 kcal (2) G-P(sol) polarization free energy of solvation -49.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds