Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86807 * 120.00133 * 2 1 4 4 H 1.48501 * 109.46672 * 269.99595 * 3 2 1 5 5 H 1.48491 * 109.47130 * 29.99779 * 3 2 1 6 6 H 1.48500 * 109.46834 * 150.00067 * 3 2 1 7 7 C 1.39982 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00412 * 197.68343 * 7 2 1 9 9 C 1.41047 * 119.99990 * 17.95753 * 7 2 1 10 10 C 1.40764 * 120.27877 * 24.32729 * 9 7 2 11 11 C 1.36429 * 119.95074 * 179.97438 * 10 9 7 12 12 C 1.39002 * 120.54598 * 359.97438 * 11 10 9 13 13 Cl 1.73602 * 119.71159 * 179.97438 * 12 11 10 14 14 C 1.38427 * 120.57592 * 0.02562 * 12 11 10 15 15 C 1.38512 * 120.02654 * 359.75052 * 14 12 11 16 16 N 1.39407 * 120.27010 * 180.27760 * 15 14 12 17 17 C 1.36570 * 126.52876 * 64.89095 * 16 15 14 18 18 C 1.35257 * 107.03908 * 179.84323 * 17 16 15 19 19 N 1.33408 * 108.45981 * 0.43041 * 18 17 16 20 20 C 1.31544 * 109.28947 * 359.72953 * 19 18 17 21 21 C 1.47577 * 125.86359 * 180.02562 * 20 19 18 22 22 N 1.30423 * 120.00135 * 179.97438 * 21 20 19 23 23 N 1.37966 * 120.00082 * 359.96028 * 21 20 19 24 24 H 0.97003 * 119.99639 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.02735 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.72954 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.98526 * 180.02562 * 14 12 11 28 28 H 1.07998 * 126.48266 * 0.02562 * 17 16 15 29 29 H 1.08002 * 125.77438 * 180.11710 * 18 17 16 30 30 H 0.96997 * 119.99702 * 180.02562 * 22 21 20 31 31 H 0.97008 * 120.00244 * 359.97438 * 23 21 20 32 32 H 0.97006 * 120.00723 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4399 2.6527 0.6999 6 1 3.5399 1.4401 0.7000 7 6 2.0082 -1.2123 0.0005 8 1 3.0500 -1.2344 0.2847 9 6 1.3545 -2.4042 -0.3755 10 6 0.2233 -2.3597 -1.2122 11 6 -0.4035 -3.5167 -1.5722 12 6 0.0655 -4.7446 -1.1199 13 17 -0.7492 -6.2034 -1.5909 14 6 1.1759 -4.8142 -0.2963 15 6 1.8334 -3.6546 0.0802 16 7 2.9556 -3.7192 0.9048 17 6 4.1570 -4.2921 0.5991 18 6 4.9597 -4.1280 1.6753 19 7 4.2731 -3.4828 2.6198 20 6 3.0613 -3.2258 2.1772 21 6 1.9985 -2.5254 2.9240 22 7 0.8331 -2.3308 2.3717 23 7 2.2375 -2.0768 4.2066 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1476 -1.4105 -1.5695 26 1 -1.2708 -3.4785 -2.2146 27 1 1.5324 -5.7733 0.0492 28 1 4.4180 -4.7809 -0.3279 29 1 5.9818 -4.4669 1.7582 30 1 0.1347 -1.8701 2.8625 31 1 3.1041 -2.2220 4.6177 32 1 1.5389 -1.6167 4.6977 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168420070.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = 87.405892 kcal Electronic energy + Delta-G solvation = -20828.855384 eV Core-core repulsion = 17622.710922 eV Total energy + Delta-G solvation = -3206.144462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.063 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.97500 -39.46461 -37.66684 -37.07577 -35.55325 -34.60205 -31.73532 -31.41921 -30.50778 -29.96032 -27.12139 -24.55688 -23.43754 -22.91843 -21.81862 -20.24773 -19.30160 -18.61497 -17.52644 -17.35430 -17.16214 -16.44967 -16.25182 -15.40588 -15.20103 -14.81970 -14.60811 -14.33955 -14.00724 -13.91426 -13.55634 -13.22967 -13.18324 -12.86509 -12.50875 -12.14735 -11.97219 -11.74181 -11.51224 -11.15001 -10.96944 -10.65824 -10.28389 -9.56930 -9.38671 -9.15631 -8.88530 -8.67605 -6.32712 0.53819 0.86350 1.01432 1.34034 1.42115 1.43022 1.63482 1.89667 2.12012 2.15354 2.62764 2.73563 3.04142 3.47987 3.59391 4.24068 4.25878 4.52224 4.57433 4.69230 4.98846 5.03443 5.14520 5.22366 5.38696 5.43216 5.63350 5.77839 5.89372 5.94072 6.18945 6.22591 6.37014 6.66034 6.82179 6.93563 6.98283 7.15032 7.76862 8.23464 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.008522 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.444309 B = 3284.959246 C = 4595.421748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.057 3.943 3 Si 0.956 3.044 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.274 1.274 7 C -0.429 4.429 8 H 0.053 0.947 9 C 0.151 3.849 10 C -0.160 4.160 11 C -0.082 4.082 12 C -0.153 4.153 13 Cl -0.104 7.104 14 C -0.057 4.057 15 C -0.021 4.021 16 N -0.340 5.340 17 C -0.052 4.052 18 C -0.037 4.037 19 N -0.489 5.489 20 C 0.216 3.784 21 C 0.473 3.527 22 N -0.709 5.709 23 N -0.873 5.873 24 H 0.290 0.710 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.196 0.804 29 H 0.206 0.794 30 H 0.328 0.672 31 H 0.402 0.598 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -2.011 2.139 4.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.163 4.163 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.071 0.929 9 C 0.146 3.854 10 C -0.180 4.180 11 C -0.101 4.101 12 C -0.181 4.181 13 Cl -0.076 7.076 14 C -0.077 4.077 15 C -0.113 4.113 16 N -0.014 5.014 17 C -0.189 4.189 18 C -0.189 4.189 19 N -0.211 5.211 20 C -0.042 4.042 21 C 0.189 3.811 22 N -0.342 5.342 23 N -0.429 5.429 24 H 0.101 0.899 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.213 0.787 29 H 0.223 0.777 30 H 0.144 0.856 31 H 0.231 0.769 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.004 -2.022 1.783 4.036 hybrid contribution -0.179 0.984 0.550 1.141 sum 2.825 -1.038 2.332 3.808 Atomic orbital electron populations 1.69854 1.08129 1.30406 1.31388 1.26346 0.95258 1.03006 0.91717 0.85576 0.79101 0.77764 0.79655 1.18350 1.19054 1.19902 1.19235 0.96703 0.92015 1.37677 0.92893 1.17341 0.90348 0.90713 0.86972 1.20868 0.99104 0.96933 1.01106 1.20500 0.99187 0.90948 0.99475 1.19874 1.00613 0.86097 1.11522 1.98229 1.79561 1.37877 1.91898 1.20281 0.94160 0.96143 0.97090 1.17112 0.94971 0.94100 1.05118 1.42125 1.10112 1.38390 1.10736 1.23509 0.85419 1.06310 1.03672 1.22741 1.01590 1.04537 0.90043 1.70114 1.01913 1.17664 1.31364 1.20744 0.93413 1.05463 0.84604 1.18790 0.89858 0.89881 0.82556 1.70346 1.01291 1.25872 1.36713 1.43210 1.19427 1.66183 1.14067 0.89921 0.86282 0.86534 0.87210 0.78719 0.77699 0.85567 0.76886 0.76360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.58 10.95 21.83 0.24 -35.34 16 2 C 0.06 2.60 5.14 85.26 0.44 3.04 16 3 Si 0.96 36.27 29.60 68.60 2.03 38.30 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.43 -20.96 6.59 23.38 0.15 -20.80 16 8 H 0.05 2.75 7.25 -2.91 -0.02 2.73 16 9 C 0.15 7.29 4.34 -21.18 -0.09 7.20 16 10 C -0.16 -7.58 8.64 22.47 0.19 -7.39 16 11 C -0.08 -3.55 9.74 22.03 0.21 -3.33 16 12 C -0.15 -6.42 6.34 22.50 0.14 -6.28 16 13 Cl -0.10 -3.72 28.94 -2.72 -0.08 -3.80 16 14 C -0.06 -2.43 9.67 22.38 0.22 -2.22 16 15 C -0.02 -0.95 4.82 38.79 0.19 -0.76 16 16 N -0.34 -14.38 2.27 -337.35 -0.77 -15.15 16 17 C -0.05 -1.83 11.46 83.27 0.95 -0.87 16 18 C -0.04 -1.22 11.84 83.77 0.99 -0.23 16 19 N -0.49 -18.60 10.95 -189.26 -2.07 -20.67 16 20 C 0.22 9.08 6.83 136.28 0.93 10.01 16 21 C 0.47 19.01 7.66 136.24 1.04 20.05 16 22 N -0.71 -30.93 10.27 -51.18 -0.53 -31.45 16 23 N -0.87 -26.67 9.03 -51.33 -0.46 -27.13 16 24 H 0.29 12.14 8.30 -92.71 -0.77 11.37 16 25 H 0.12 5.79 6.14 -2.91 -0.02 5.78 16 26 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 27 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 28 H 0.20 5.55 8.06 -2.91 -0.02 5.52 16 29 H 0.21 4.82 8.06 -2.91 -0.02 4.79 16 30 H 0.33 13.48 8.81 -92.71 -0.82 12.67 16 31 H 0.40 11.31 8.59 -92.70 -0.80 10.51 16 32 H 0.41 10.23 8.84 -92.70 -0.82 9.41 16 Total: -1.00 -55.52 296.57 2.53 -52.99 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -1.21 Total: 43.83 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 5.38 Total: -1.58 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -3.59 Total: -129.74 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 2.03 Total: 38.30 kcal Atomic # 17 Polarization: -3.72 SS G_CDS: -0.08 Total: -3.80 kcal Total: -55.52 2.53 -52.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168420070.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.400 kcal (2) G-P(sol) polarization free energy of solvation -55.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds