Wall clock time and date at job start Tue Mar 31 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39139 * 120.06125 * 2 1 4 4 N 1.31230 * 121.72969 * 180.02562 * 3 2 1 5 5 C 1.33448 * 121.38612 * 359.97438 * 4 3 2 6 6 C 1.41494 * 121.03085 * 180.02562 * 5 4 3 7 7 N 1.38858 * 120.28159 * 359.95020 * 6 5 4 8 8 C 1.34777 * 120.00343 * 204.92529 * 7 6 5 9 9 O 1.21822 * 119.99548 * 5.52986 * 8 7 6 10 10 C 1.41509 * 120.00369 * 185.52243 * 8 7 6 11 11 H 1.08001 * 119.99926 * 0.02562 * 10 8 7 12 12 C 1.40154 * 120.00093 * 179.97438 * 10 8 7 13 13 N 1.30626 * 120.00111 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99986 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46984 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46958 * 120.00113 * 14 12 10 17 17 H 1.48504 * 109.46406 * 239.99897 * 14 12 10 18 18 C 1.38246 * 119.43897 * 179.97438 * 6 5 4 19 19 C 1.38952 * 120.78473 * 359.97438 * 18 6 5 20 20 C 1.36413 * 120.98952 * 0.02562 * 19 18 6 21 21 C 1.40439 * 119.97980 * 359.97438 * 20 19 18 22 22 C 1.36866 * 120.05449 * 180.02562 * 2 1 3 23 23 Cl 1.73592 * 120.93783 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.46846 * 89.99896 * 1 2 3 25 25 H 1.08992 * 109.46988 * 209.99996 * 1 2 3 26 26 H 1.09003 * 109.46909 * 330.00127 * 1 2 3 27 27 H 1.08003 * 119.13415 * 359.97438 * 3 2 1 28 28 H 0.97005 * 120.00084 * 24.92495 * 7 6 5 29 29 H 0.96997 * 120.00436 * 180.02562 * 13 12 10 30 30 H 1.07995 * 119.60615 * 180.02562 * 18 6 5 31 31 H 1.08001 * 119.50371 * 179.97438 * 19 18 6 32 32 H 1.08011 * 120.01116 * 179.72317 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2042 0.0000 4 7 3.5157 1.2424 -0.0005 5 6 4.2436 0.1239 -0.0005 6 6 5.6577 0.1739 -0.0005 7 7 6.3151 1.3970 -0.0015 8 6 7.5665 1.4891 -0.4935 9 8 8.0831 0.5242 -1.0284 10 6 8.2802 2.7066 -0.3887 11 1 7.8222 3.5618 0.0858 12 6 9.5817 2.8021 -0.8998 13 7 10.1358 1.7675 -1.4733 14 14 10.5240 4.4090 -0.7609 15 1 9.6800 5.4201 -0.0750 16 1 11.7668 4.1880 0.0213 17 1 10.8742 4.8964 -2.1193 18 6 6.3792 -1.0053 0.0000 19 6 5.7322 -2.2350 0.0010 20 6 4.3703 -2.3120 0.0011 21 6 3.6009 -1.1371 0.0006 22 6 2.1925 -1.1846 -0.0005 23 17 1.3507 -2.7028 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6509 2.1319 -0.0004 28 1 5.8737 2.1852 0.3518 29 1 11.0367 1.8335 -1.8267 30 1 7.4586 -0.9703 0.0004 31 1 6.3164 -3.1434 0.0010 32 1 3.8837 -3.2763 -0.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168537758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:22 Heat of formation + Delta-G solvation = 5.924679 kcal Electronic energy + Delta-G solvation = -19818.883350 eV Core-core repulsion = 16576.912846 eV Total energy + Delta-G solvation = -3241.970504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69874 -38.39284 -36.73924 -36.38783 -34.07351 -33.09519 -32.40119 -30.91084 -29.01133 -27.00352 -26.39843 -23.97540 -22.47557 -21.93782 -19.81347 -18.28061 -17.35440 -17.15481 -16.43938 -15.62123 -14.81006 -14.74006 -14.49766 -14.10853 -13.80973 -13.46501 -13.25950 -13.08699 -12.72718 -12.63195 -12.31038 -12.16660 -11.69902 -11.39577 -11.33782 -11.20393 -11.05845 -10.75092 -10.68532 -10.35605 -9.95980 -9.43045 -9.12175 -8.75801 -8.42848 -7.76966 -6.82063 -6.45776 -4.98751 0.62441 1.07105 1.98959 2.27792 3.00571 3.09703 3.14604 3.25461 3.92064 4.21453 4.41469 4.47347 4.53774 4.69408 4.85601 5.00418 5.34611 5.43299 5.45324 5.46422 5.61489 5.71847 5.87827 5.96132 5.99149 6.19430 6.48214 6.64931 6.83579 6.97532 7.15566 7.31135 7.77478 7.91193 7.99066 8.18768 8.71630 9.16627 10.27583 10.46692 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.031463 B = 0.004026 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.708682 B = 6952.961574 C = 7753.515370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.128 4.128 3 C 0.109 3.891 4 N -0.447 5.447 5 C 0.086 3.914 6 C 0.232 3.768 7 N -0.672 5.672 8 C 0.537 3.463 9 O -0.562 6.562 10 C -0.531 4.531 11 H 0.073 0.927 12 C 0.087 3.913 13 N -0.743 5.743 14 Si 0.915 3.085 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.273 1.273 18 C -0.159 4.159 19 C -0.058 4.058 20 C -0.175 4.175 21 C -0.058 4.058 22 C 0.002 3.998 23 Cl -0.057 7.057 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.402 0.598 29 H 0.274 0.726 30 H 0.163 0.837 31 H 0.124 0.876 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 -3.866 3.796 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.131 4.131 3 C -0.064 4.064 4 N -0.154 5.154 5 C -0.039 4.039 6 C 0.127 3.873 7 N -0.310 5.310 8 C 0.347 3.653 9 O -0.447 6.447 10 C -0.565 4.565 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.370 5.370 14 Si 0.739 3.261 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.183 4.183 19 C -0.077 4.077 20 C -0.196 4.196 21 C -0.061 4.061 22 C -0.033 4.033 23 Cl -0.028 7.028 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.178 0.822 28 H 0.236 0.764 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.142 0.858 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.864 -3.852 3.313 14.766 hybrid contribution -0.380 0.217 0.119 0.453 sum -14.244 -3.635 3.432 15.096 Atomic orbital electron populations 1.20778 0.89754 1.03427 1.02876 1.20474 0.97851 0.92504 1.02290 1.22591 0.89566 0.96463 0.97826 1.67710 1.07451 1.30423 1.09788 1.18621 0.92977 0.87627 1.04641 1.17801 0.87477 0.88669 0.93368 1.44107 1.17764 1.07511 1.61590 1.17087 0.78383 0.90588 0.79222 1.90617 1.67040 1.39673 1.47326 1.20068 0.99489 0.97768 1.39200 0.90855 1.25785 0.97423 0.97650 0.92793 1.70005 1.13194 1.29394 1.24432 0.86185 0.79522 0.81640 0.78779 1.18438 1.19821 1.19849 1.21706 1.03062 0.89698 1.03794 1.20843 0.93876 0.97840 0.95101 1.20672 0.94104 0.96354 1.08429 1.18254 0.91140 0.94932 1.01736 1.20835 0.91507 0.86874 1.04053 1.98333 1.77073 1.30820 1.96577 0.90643 0.90980 0.90852 0.82191 0.76383 0.91516 0.81987 0.85814 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.64 36.01 0.35 -0.66 16 2 C -0.13 -1.66 5.87 -104.78 -0.61 -2.28 16 3 C 0.11 1.54 10.81 -17.47 -0.19 1.35 16 4 N -0.45 -8.00 9.77 -10.85 -0.11 -8.11 16 5 C 0.09 1.68 6.62 -84.67 -0.56 1.12 16 6 C 0.23 5.08 6.47 -83.44 -0.54 4.54 16 7 N -0.67 -15.69 5.24 -12.23 -0.06 -15.75 16 8 C 0.54 14.75 7.36 -15.01 -0.11 14.64 16 9 O -0.56 -17.04 12.03 5.08 0.06 -16.98 16 10 C -0.53 -14.27 9.30 -37.62 -0.35 -14.62 16 11 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 12 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 13 N -0.74 -20.88 11.73 55.56 0.65 -20.23 16 14 Si 0.91 19.00 29.56 -169.99 -5.02 13.97 16 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 18 C -0.16 -3.39 8.69 -39.31 -0.34 -3.73 16 19 C -0.06 -1.00 9.94 -39.97 -0.40 -1.40 16 20 C -0.17 -2.87 9.46 -39.41 -0.37 -3.24 16 21 C -0.06 -1.00 5.74 -106.79 -0.61 -1.61 16 22 C 0.00 0.03 6.36 -39.06 -0.25 -0.22 16 23 Cl -0.06 -0.70 26.04 -51.86 -1.35 -2.05 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.63 6.95 -51.93 -0.36 0.27 16 26 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.40 8.54 8.32 -40.82 -0.34 8.20 16 29 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 30 H 0.16 3.92 5.74 -52.49 -0.30 3.62 16 31 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.12 1.73 7.04 -52.48 -0.37 1.36 16 LS Contribution 293.97 15.07 4.43 4.43 Total: -1.00 -31.39 293.97 -8.10 -39.49 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -2.61 Total: 9.15 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.09 Total: -3.93 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.48 Total: -44.09 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.06 Total: -16.98 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.35 Total: -2.05 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.39 -8.10 -39.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168537758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.412 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds