Wall clock time and date at job start Tue Mar 31 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39139 * 120.06125 * 2 1 4 4 N 1.31230 * 121.72969 * 180.02562 * 3 2 1 5 5 C 1.33448 * 121.38612 * 359.97438 * 4 3 2 6 6 C 1.41494 * 121.03085 * 180.02562 * 5 4 3 7 7 N 1.38858 * 120.28159 * 359.95020 * 6 5 4 8 8 C 1.34777 * 120.00343 * 204.92529 * 7 6 5 9 9 O 1.21822 * 119.99548 * 5.52986 * 8 7 6 10 10 C 1.41509 * 120.00369 * 185.52243 * 8 7 6 11 11 H 1.08001 * 119.99926 * 0.02562 * 10 8 7 12 12 C 1.40154 * 120.00093 * 179.97438 * 10 8 7 13 13 N 1.30626 * 120.00111 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99986 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46984 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46958 * 120.00113 * 14 12 10 17 17 H 1.48504 * 109.46406 * 239.99897 * 14 12 10 18 18 C 1.38246 * 119.43897 * 179.97438 * 6 5 4 19 19 C 1.38952 * 120.78473 * 359.97438 * 18 6 5 20 20 C 1.36413 * 120.98952 * 0.02562 * 19 18 6 21 21 C 1.40439 * 119.97980 * 359.97438 * 20 19 18 22 22 C 1.36866 * 120.05449 * 180.02562 * 2 1 3 23 23 Cl 1.73592 * 120.93783 * 359.97438 * 22 2 1 24 24 H 1.09001 * 109.46846 * 89.99896 * 1 2 3 25 25 H 1.08992 * 109.46988 * 209.99996 * 1 2 3 26 26 H 1.09003 * 109.46909 * 330.00127 * 1 2 3 27 27 H 1.08003 * 119.13415 * 359.97438 * 3 2 1 28 28 H 0.97005 * 120.00084 * 24.92495 * 7 6 5 29 29 H 0.96997 * 120.00436 * 180.02562 * 13 12 10 30 30 H 1.07995 * 119.60615 * 180.02562 * 18 6 5 31 31 H 1.08001 * 119.50371 * 179.97438 * 19 18 6 32 32 H 1.08011 * 120.01116 * 179.72317 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2040 1.2042 0.0000 4 7 3.5157 1.2424 -0.0005 5 6 4.2436 0.1239 -0.0005 6 6 5.6577 0.1739 -0.0005 7 7 6.3151 1.3970 -0.0015 8 6 7.5665 1.4891 -0.4935 9 8 8.0831 0.5242 -1.0284 10 6 8.2802 2.7066 -0.3887 11 1 7.8222 3.5618 0.0858 12 6 9.5817 2.8021 -0.8998 13 7 10.1358 1.7675 -1.4733 14 14 10.5240 4.4090 -0.7609 15 1 9.6800 5.4201 -0.0750 16 1 11.7668 4.1880 0.0213 17 1 10.8742 4.8964 -2.1193 18 6 6.3792 -1.0053 0.0000 19 6 5.7322 -2.2350 0.0010 20 6 4.3703 -2.3120 0.0011 21 6 3.6009 -1.1371 0.0006 22 6 2.1925 -1.1846 -0.0005 23 17 1.3507 -2.7028 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6509 2.1319 -0.0004 28 1 5.8737 2.1852 0.3518 29 1 11.0367 1.8335 -1.8267 30 1 7.4586 -0.9703 0.0004 31 1 6.3164 -3.1434 0.0010 32 1 3.8837 -3.2763 -0.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168537758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:22 Heat of formation + Delta-G solvation = -14.677491 kcal Electronic energy + Delta-G solvation = -19819.776727 eV Core-core repulsion = 16576.912846 eV Total energy + Delta-G solvation = -3242.863881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.04865 -40.12616 -38.01027 -37.73042 -35.70278 -34.72969 -34.07259 -32.26202 -30.59172 -28.52588 -27.86481 -25.24605 -23.86780 -23.46951 -21.51746 -19.90274 -18.90183 -18.53722 -17.92153 -17.51969 -16.25230 -16.07802 -16.02031 -15.55161 -15.26262 -14.80533 -14.63216 -14.48581 -14.23131 -13.93013 -13.33140 -13.25680 -13.17539 -13.04931 -12.87001 -12.75442 -12.61681 -12.38452 -11.99485 -11.82921 -11.46148 -10.98721 -10.67592 -10.26895 -9.88724 -9.66561 -8.46098 -8.42079 -7.07138 -0.64956 -0.23330 0.85979 0.87197 1.37863 1.38903 1.57469 1.93161 2.18915 2.34638 2.81072 3.01756 3.22506 3.55635 3.59165 3.74505 3.79312 4.14651 4.19540 4.41071 4.45393 4.60628 4.70141 4.82993 5.04310 5.07094 5.16092 5.19867 5.30019 5.46644 5.53949 5.77023 5.84774 6.08449 6.24746 6.68147 6.85397 7.28111 8.29656 8.49408 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.031463 B = 0.004026 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.708682 B = 6952.961574 C = 7753.515370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C 0.125 3.875 4 N -0.483 5.483 5 C 0.074 3.926 6 C 0.192 3.808 7 N -0.673 5.673 8 C 0.524 3.476 9 O -0.605 6.605 10 C -0.560 4.560 11 H 0.089 0.911 12 C 0.033 3.967 13 N -0.795 5.795 14 Si 1.003 2.997 15 H -0.247 1.247 16 H -0.264 1.264 17 H -0.265 1.265 18 C -0.175 4.175 19 C -0.068 4.068 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.006 4.006 23 Cl -0.030 7.030 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.202 0.798 28 H 0.407 0.593 29 H 0.281 0.719 30 H 0.123 0.877 31 H 0.150 0.850 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.255 -3.258 4.232 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C -0.049 4.049 4 N -0.191 5.191 5 C -0.049 4.049 6 C 0.089 3.911 7 N -0.312 5.312 8 C 0.335 3.665 9 O -0.493 6.493 10 C -0.594 4.594 11 H 0.107 0.893 12 C -0.186 4.186 13 N -0.423 5.423 14 Si 0.822 3.178 15 H -0.170 1.170 16 H -0.189 1.189 17 H -0.190 1.190 18 C -0.199 4.199 19 C -0.087 4.087 20 C -0.172 4.172 21 C -0.078 4.078 22 C -0.041 4.041 23 Cl -0.001 7.001 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.219 0.781 28 H 0.242 0.758 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.168 0.832 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.161 -3.283 3.772 17.875 hybrid contribution 0.260 -0.099 0.008 0.279 sum -16.901 -3.382 3.780 17.645 Atomic orbital electron populations 1.20924 0.86259 1.05143 1.04338 1.20975 1.00165 0.91355 0.99358 1.23437 0.88521 0.98711 0.94263 1.67727 1.09275 1.30104 1.11994 1.18540 0.91998 0.89195 1.05177 1.18027 0.89100 0.87916 0.96019 1.43605 1.16817 1.08555 1.62254 1.17421 0.79579 0.90488 0.79027 1.90577 1.68593 1.40888 1.49208 1.20562 1.00619 0.98168 1.40089 0.89321 1.27030 0.98089 1.01958 0.91478 1.70142 1.14067 1.32424 1.25656 0.84884 0.77775 0.75996 0.79159 1.17041 1.18860 1.19009 1.21505 1.01384 0.91675 1.05358 1.21000 0.94833 0.97157 0.95703 1.21017 0.93476 0.97427 1.05283 1.18499 0.92857 0.94349 1.02141 1.20955 0.90602 0.88843 1.03734 1.98345 1.76167 1.29147 1.96400 0.89011 0.90378 0.88155 0.78147 0.75753 0.90820 0.85934 0.83191 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.64 71.24 0.69 -0.73 16 2 C -0.12 -2.57 5.87 -19.97 -0.12 -2.68 16 3 C 0.12 3.12 10.81 85.00 0.92 4.04 16 4 N -0.48 -17.04 9.77 -188.24 -1.84 -18.88 16 5 C 0.07 2.93 6.62 40.51 0.27 3.20 16 6 C 0.19 8.94 6.47 38.83 0.25 9.19 16 7 N -0.67 -33.67 5.24 -310.78 -1.63 -35.29 16 8 C 0.52 30.87 7.36 85.05 0.63 31.49 16 9 O -0.60 -39.66 12.03 -4.74 -0.06 -39.72 16 10 C -0.56 -31.52 9.30 23.54 0.22 -31.30 16 11 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 12 C 0.03 1.80 5.50 85.34 0.47 2.27 16 13 N -0.79 -46.89 11.73 21.85 0.26 -46.64 16 14 Si 1.00 39.55 29.56 68.60 2.03 41.58 16 15 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 18 C -0.17 -8.07 8.69 22.44 0.20 -7.87 16 19 C -0.07 -2.45 9.94 22.01 0.22 -2.23 16 20 C -0.15 -4.83 9.46 22.38 0.21 -4.62 16 21 C -0.08 -2.54 5.74 -21.27 -0.12 -2.67 16 22 C -0.01 -0.17 6.36 22.61 0.14 -0.03 16 23 Cl -0.03 -0.62 26.04 -2.72 -0.07 -0.69 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.97 6.95 -2.39 -0.02 0.96 16 26 H 0.10 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.41 18.45 8.32 -92.70 -0.77 17.68 16 29 H 0.28 14.83 8.29 -92.71 -0.77 14.06 16 30 H 0.12 6.60 5.74 -2.91 -0.02 6.59 16 31 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 32 H 0.15 3.87 7.04 -2.90 -0.02 3.85 16 Total: -1.00 -74.61 293.97 3.08 -71.53 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.42 Total: 30.04 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 3.97 Total: -1.93 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.21 Total: -100.81 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -0.06 Total: -39.72 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.69 kcal Total: -74.61 3.08 -71.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168537758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.852 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds