Wall clock time and date at job start Tue Mar 31 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32285 * 120.67010 * 2 1 4 4 C 1.32242 * 119.58134 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.49240 * 180.02562 * 4 3 2 6 6 N 1.31999 * 121.02074 * 359.97438 * 4 3 2 7 7 N 1.28738 * 121.44571 * 0.02562 * 6 4 3 8 8 C 1.32746 * 120.31173 * 0.02562 * 7 6 4 9 9 N 1.39253 * 120.50805 * 179.97438 * 8 7 6 10 10 C 1.38358 * 120.00011 * 357.04061 * 9 8 7 11 11 C 1.38976 * 119.99788 * 300.30448 * 10 9 8 12 12 H 1.07999 * 120.00003 * 162.22875 * 11 10 9 13 13 C 1.40845 * 120.00316 * 342.23487 * 11 10 9 14 14 N 1.30331 * 119.99429 * 349.78289 * 13 11 10 15 15 Si 1.86800 * 120.00421 * 169.77966 * 13 11 10 16 16 H 1.48494 * 109.47202 * 89.99886 * 15 13 11 17 17 H 1.48493 * 109.47345 * 210.00128 * 15 13 11 18 18 H 1.48503 * 109.46657 * 330.00170 * 15 13 11 19 19 C 1.41146 * 120.00572 * 120.31378 * 10 9 8 20 20 C 1.43202 * 120.00484 * 185.18820 * 19 10 9 21 21 N 7.04948 * 107.45160 * 171.75941 * 2 1 3 22 22 C 1.43205 * 119.99738 * 5.18162 * 19 10 9 23 23 N 5.17920 * 78.36537 * 145.43215 * 2 1 3 24 24 H 1.09005 * 109.46947 * 90.00256 * 1 2 3 25 25 H 1.08997 * 109.46946 * 209.99613 * 1 2 3 26 26 H 1.08991 * 109.47461 * 330.00339 * 1 2 3 27 27 H 0.96996 * 119.99735 * 177.03262 * 9 8 7 28 28 H 0.97006 * 119.99357 * 185.04931 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1818 1.1378 0.0000 4 6 3.5039 1.1127 0.0005 5 17 4.3871 2.6072 0.0012 6 7 4.1626 -0.0312 0.0015 7 7 3.5459 -1.1613 0.0016 8 6 2.2190 -1.2004 0.0001 9 7 1.5477 -2.4205 -0.0004 10 6 2.2628 -3.6034 -0.0612 11 6 3.0953 -3.8573 -1.1447 12 1 3.8593 -4.6171 -1.0723 13 6 2.9428 -3.1234 -2.3372 14 7 1.9047 -2.3523 -2.4994 15 14 4.2283 -3.2553 -3.6861 16 1 3.8640 -4.3587 -4.6108 17 1 4.2880 -1.9773 -4.4397 18 1 5.5548 -3.5351 -3.0799 19 6 2.1466 -4.5526 0.9770 20 6 2.9686 -5.7251 0.9706 21 7 3.6211 -6.6556 0.9639 22 6 1.2067 -4.3429 2.0369 23 7 0.4625 -4.1772 2.8782 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5137 27 1 0.5789 -2.4410 0.0419 28 1 1.7613 -1.9042 -3.3477 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169077749.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:13 Heat of formation + Delta-G solvation = 114.132978 kcal Electronic energy + Delta-G solvation = -19894.676371 eV Core-core repulsion = 16586.150539 eV Total energy + Delta-G solvation = -3308.525832 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.038 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.84179 -39.44047 -37.97754 -37.14490 -36.56942 -36.44160 -35.49006 -33.61221 -31.11908 -30.13479 -28.83775 -25.97806 -24.58042 -23.21862 -21.11684 -20.10400 -19.03787 -18.43809 -18.11377 -17.88135 -17.02133 -16.72381 -15.35013 -14.71549 -14.63731 -14.41647 -14.28161 -13.96985 -13.86109 -13.76311 -13.46299 -13.40014 -13.37698 -13.20769 -13.11898 -12.78204 -12.71699 -12.68456 -12.52956 -12.24054 -12.07587 -11.83627 -11.59221 -10.31353 -10.07807 -9.45250 -8.80528 -7.15714 -0.50112 -0.26846 0.31122 0.60761 1.30855 1.42311 1.48222 1.91957 2.02801 2.06214 2.23506 2.42006 2.51862 2.57960 2.66494 3.07899 3.37363 3.47153 3.83135 3.91511 4.29334 4.55599 4.61254 4.66699 4.71625 5.14234 5.29019 5.47823 5.71572 5.93255 6.04381 6.41606 6.60772 7.16563 7.33827 7.48268 7.58232 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.007113 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.648101 B = 3935.677451 C = 4937.001214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.137 3.863 3 N -0.444 5.444 4 C 0.217 3.783 5 Cl 0.038 6.962 6 N -0.248 5.248 7 N -0.253 5.253 8 C 0.330 3.670 9 N -0.603 5.603 10 C 0.365 3.635 11 C -0.341 4.341 12 H 0.104 0.896 13 C 0.056 3.944 14 N -0.725 5.725 15 Si 0.966 3.034 16 H -0.245 1.245 17 H -0.263 1.263 18 H -0.259 1.259 19 C -0.321 4.321 20 C 0.328 3.672 21 N -0.556 5.556 22 C 0.315 3.685 23 N -0.550 5.550 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.424 0.576 28 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.895 11.197 -6.648 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.030 4.030 3 N -0.166 5.166 4 C -0.080 4.080 5 Cl 0.065 6.935 6 N -0.096 5.096 7 N -0.110 5.110 8 C 0.082 3.918 9 N -0.230 5.230 10 C 0.261 3.739 11 C -0.368 4.368 12 H 0.122 0.878 13 C -0.175 4.175 14 N -0.343 5.343 15 Si 0.786 3.214 16 H -0.168 1.168 17 H -0.187 1.187 18 H -0.183 1.183 19 C -0.340 4.340 20 C 0.022 3.978 21 N -0.240 5.240 22 C 0.009 3.991 23 N -0.233 5.233 24 H 0.132 0.868 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.267 0.733 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.900 10.320 -5.479 11.837 hybrid contribution -0.381 0.306 -0.767 0.910 sum -2.281 10.625 -6.246 12.534 Atomic orbital electron populations 1.20903 0.83263 1.05513 1.05870 1.22637 1.00297 0.85353 0.94696 1.68208 1.07064 1.29862 1.11469 1.24427 0.88419 0.90786 1.04380 1.98391 1.72783 1.25690 1.96626 1.73378 1.32202 0.94196 1.09857 1.73952 1.06160 1.15122 1.15747 1.20389 0.92036 0.88444 0.90952 1.41045 1.08572 0.99914 1.73502 1.16608 0.86775 0.81726 0.88764 1.20422 1.10936 1.11506 0.93949 0.87783 1.26908 0.97465 0.91178 1.01989 1.69390 1.22838 1.14557 1.27542 0.85299 0.78994 0.79998 0.77097 1.16820 1.18696 1.18266 1.12756 1.16148 1.00931 1.04193 1.24873 0.90868 0.90967 0.91126 1.81074 1.16208 1.14404 1.12300 1.25175 0.91134 0.91628 0.91146 1.81055 1.17182 1.11763 1.13302 0.86802 0.89044 0.87641 0.73347 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.84 71.24 0.70 -1.19 15 2 C 0.14 3.99 6.85 42.81 0.29 4.29 15 3 N -0.44 -13.79 10.45 -177.90 -1.86 -15.65 15 4 C 0.22 7.25 8.25 180.69 1.49 8.74 15 5 Cl 0.04 1.03 29.28 -2.72 -0.08 0.95 15 6 N -0.25 -9.39 11.53 -53.68 -0.62 -10.01 15 7 N -0.25 -9.96 10.00 -54.77 -0.55 -10.50 15 8 C 0.33 11.35 5.69 132.98 0.76 12.11 15 9 N -0.60 -20.26 3.30 -184.05 -0.61 -20.87 15 10 C 0.36 14.17 5.55 39.00 0.22 14.38 15 11 C -0.34 -13.38 7.89 23.08 0.18 -13.20 15 12 H 0.10 4.30 6.95 -2.91 -0.02 4.28 15 13 C 0.06 1.96 4.77 85.55 0.41 2.36 15 14 N -0.72 -23.72 10.72 21.98 0.24 -23.48 15 15 Si 0.97 29.36 29.58 68.60 2.03 31.39 15 16 H -0.24 -6.99 7.11 99.48 0.71 -6.29 15 17 H -0.26 -7.79 7.11 99.48 0.71 -7.08 15 18 H -0.26 -8.56 7.11 99.48 0.71 -7.86 15 19 C -0.32 -13.39 5.88 -20.07 -0.12 -13.51 15 20 C 0.33 14.75 13.88 88.33 1.23 15.97 15 21 N -0.56 -26.20 18.54 19.01 0.35 -25.85 15 22 C 0.32 13.27 14.80 88.34 1.31 14.58 15 23 N -0.55 -23.86 18.53 19.00 0.35 -23.51 15 24 H 0.11 1.85 8.14 -2.38 -0.02 1.83 15 25 H 0.09 1.63 6.62 -2.39 -0.02 1.61 15 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 27 H 0.42 12.27 6.89 -92.71 -0.64 11.63 15 28 H 0.31 9.20 8.29 -92.70 -0.77 8.43 15 Total: -1.00 -51.10 291.70 6.36 -44.74 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.64 Total: 8.26 kcal Atomic # 6 Polarization: 38.08 SS G_CDS: 6.46 Total: 44.54 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -2.69 Total: -129.88 kcal Atomic # 14 Polarization: 29.36 SS G_CDS: 2.03 Total: 31.39 kcal Atomic # 17 Polarization: 1.03 SS G_CDS: -0.08 Total: 0.95 kcal Total: -51.10 6.36 -44.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169077749.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.878 kcal (2) G-P(sol) polarization free energy of solvation -51.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds