Wall clock time and date at job start Tue Mar 31 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.43202 * 119.99926 * 209.94938 * 3 2 1 5 5 N 3.51032 * 140.68888 * 209.95495 * 2 1 3 6 6 C 1.41162 * 120.00477 * 29.95642 * 3 2 1 7 7 C 1.38998 * 119.99780 * 6.02844 * 6 3 2 8 8 H 1.08002 * 119.99764 * 339.36087 * 7 6 3 9 9 C 1.40835 * 120.00152 * 159.35485 * 7 6 3 10 10 N 1.30332 * 119.99951 * 350.11727 * 9 7 6 11 11 Si 1.86799 * 120.00015 * 170.12231 * 9 7 6 12 12 H 1.48503 * 109.47407 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47219 * 120.00039 * 11 9 7 14 14 H 1.48507 * 109.46871 * 240.00102 * 11 9 7 15 15 N 1.38302 * 120.00579 * 186.02998 * 6 3 2 16 16 C 1.39476 * 120.00026 * 119.90970 * 15 6 3 17 17 N 1.32219 * 120.19156 * 355.13199 * 16 15 6 18 18 N 1.28306 * 122.17993 * 179.97438 * 17 16 15 19 19 C 1.31991 * 122.46219 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.97564 * 180.02562 * 19 18 17 21 21 C 1.38688 * 120.05127 * 359.97438 * 19 18 17 22 22 C 1.39298 * 117.92354 * 359.74555 * 21 19 18 23 23 N 1.39430 * 121.11290 * 180.26484 * 22 21 19 24 24 H 0.97003 * 120.00006 * 185.04518 * 10 9 7 25 25 H 0.97007 * 120.00100 * 299.64282 * 15 6 3 26 26 H 1.08000 * 121.03487 * 180.02562 * 21 19 18 27 27 H 0.97003 * 119.99741 * 180.22295 * 23 22 21 28 28 H 0.97000 * 120.00586 * 0.22934 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2835 1.0755 0.6191 5 7 3.8520 1.9268 1.1104 6 6 3.2743 -1.0582 -0.6104 7 6 2.5856 -2.0354 -1.3194 8 1 1.5320 -2.1910 -1.1401 9 6 3.2616 -2.8227 -2.2716 10 7 4.4762 -2.5133 -2.6288 11 14 2.4173 -4.3101 -3.0227 12 1 1.0520 -4.4439 -2.4542 13 1 2.3252 -4.1362 -4.4946 14 1 3.2034 -5.5323 -2.7169 15 7 4.6516 -1.1233 -0.5031 16 6 5.2528 -2.2290 0.0980 17 7 4.5087 -3.1712 0.6519 18 7 5.0212 -4.2042 1.2144 19 6 6.3247 -4.4009 1.2815 20 17 6.9485 -5.8229 2.0578 21 6 7.1963 -3.4730 0.7313 22 6 6.6495 -2.3509 0.1130 23 7 7.4639 -1.3790 -0.4667 24 1 4.9151 -3.0105 -3.3368 25 1 5.1998 -0.4017 -0.8493 26 1 8.2655 -3.6182 0.7768 27 1 7.0659 -0.6024 -0.8902 28 1 8.4285 -1.4795 -0.4467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:44 Heat of formation + Delta-G solvation = 98.925571 kcal Electronic energy + Delta-G solvation = -19833.331666 eV Core-core repulsion = 16524.146391 eV Total energy + Delta-G solvation = -3309.185275 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.038 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.93341 -39.09560 -37.65708 -37.08931 -36.67212 -36.48628 -35.06604 -32.94644 -31.65240 -30.18265 -28.77100 -25.42347 -24.38204 -22.98174 -20.86610 -19.71961 -18.96138 -18.55276 -17.96408 -17.75984 -16.75727 -16.43254 -16.15782 -15.68527 -15.23527 -14.66093 -14.41441 -14.35717 -13.89658 -13.57679 -13.46216 -13.36047 -13.16290 -13.13546 -12.70930 -12.70108 -12.62109 -12.38110 -12.12757 -12.05945 -11.59956 -11.44204 -10.43958 -10.07249 -9.56693 -9.19424 -8.27087 -7.07545 0.07032 0.21540 0.71677 0.85397 1.35004 1.47299 1.50629 2.02638 2.09078 2.15578 2.25741 2.55921 2.60972 2.71541 2.80837 3.44682 3.59489 3.69980 3.91086 4.04187 4.32655 4.56233 4.69997 4.77068 5.04502 5.41698 5.64051 5.99178 6.12620 6.20918 6.62317 6.75448 6.79488 7.20849 7.37543 7.68323 8.07404 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.007021 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.087950 B = 3987.153862 C = 4930.163694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C 0.329 3.671 3 C -0.327 4.327 4 C 0.318 3.682 5 N -0.555 5.555 6 C 0.381 3.619 7 C -0.350 4.350 8 H 0.097 0.903 9 C 0.057 3.943 10 N -0.720 5.720 11 Si 0.968 3.032 12 H -0.260 1.260 13 H -0.247 1.247 14 H -0.266 1.266 15 N -0.627 5.627 16 C 0.322 3.678 17 N -0.278 5.278 18 N -0.283 5.283 19 C 0.101 3.899 20 Cl -0.019 7.019 21 C -0.185 4.185 22 C 0.198 3.802 23 N -0.829 5.829 24 H 0.311 0.689 25 H 0.412 0.588 26 H 0.185 0.815 27 H 0.408 0.592 28 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.156 -7.343 -3.784 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.244 5.244 2 C 0.022 3.978 3 C -0.347 4.347 4 C 0.012 3.988 5 N -0.239 5.239 6 C 0.277 3.723 7 C -0.377 4.377 8 H 0.115 0.885 9 C -0.174 4.174 10 N -0.338 5.338 11 Si 0.789 3.211 12 H -0.184 1.184 13 H -0.170 1.170 14 H -0.191 1.191 15 N -0.257 5.257 16 C 0.074 3.926 17 N -0.126 5.126 18 N -0.126 5.126 19 C -0.077 4.077 20 Cl 0.009 6.991 21 C -0.221 4.221 22 C 0.076 3.924 23 N -0.372 5.372 24 H 0.124 0.876 25 H 0.251 0.749 26 H 0.202 0.798 27 H 0.238 0.762 28 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 11.927 -6.800 -2.688 13.990 hybrid contribution 1.543 0.051 -0.972 1.824 sum 13.470 -6.749 -3.660 15.504 Atomic orbital electron populations 1.81033 1.12866 1.12500 1.18035 1.24915 0.91620 0.91017 0.90212 1.12921 0.82538 1.03005 1.36230 1.25197 0.92158 0.91287 0.90148 1.81030 1.10550 1.13879 1.18427 1.16516 0.80634 0.89388 0.85778 1.20382 0.97976 1.09591 1.09765 0.88471 1.26830 0.94915 0.99598 0.96064 1.69382 1.10719 1.34441 1.19273 0.85259 0.79986 0.76737 0.79157 1.18385 1.17029 1.19114 1.40738 1.04513 1.19065 1.61343 1.19754 0.88336 0.90410 0.94077 1.73008 1.29283 0.98743 1.11515 1.72548 1.11428 1.13765 1.14897 1.23058 0.92068 0.92242 1.00305 1.98357 1.84719 1.36944 1.79063 1.21360 1.02492 0.93482 1.04724 1.18195 0.88531 0.91512 0.94189 1.42082 1.08927 1.23351 1.62879 0.87633 0.74908 0.79817 0.76170 0.74612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -27.57 18.54 19.00 0.35 -27.22 15 2 C 0.33 15.51 13.90 88.33 1.23 16.74 15 3 C -0.33 -14.41 5.88 -20.07 -0.12 -14.53 15 4 C 0.32 14.03 14.80 88.34 1.31 15.34 15 5 N -0.56 -25.05 18.53 19.00 0.35 -24.70 15 6 C 0.38 15.65 5.48 39.02 0.21 15.87 15 7 C -0.35 -14.55 7.84 23.09 0.18 -14.37 15 8 H 0.10 4.31 7.00 -2.91 -0.02 4.29 15 9 C 0.06 2.10 4.96 85.55 0.42 2.53 15 10 N -0.72 -24.46 11.00 21.98 0.24 -24.21 15 11 Si 0.97 30.90 29.58 68.60 2.03 32.93 15 12 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 13 H -0.25 -7.15 7.11 99.48 0.71 -6.44 15 14 H -0.27 -8.71 7.11 99.48 0.71 -8.00 15 15 N -0.63 -22.02 3.32 -183.75 -0.61 -22.62 15 16 C 0.32 11.25 5.97 133.22 0.80 12.05 15 17 N -0.28 -11.28 10.06 -54.50 -0.55 -11.83 15 18 N -0.28 -10.87 11.47 -49.94 -0.57 -11.44 15 19 C 0.10 3.08 7.36 84.78 0.62 3.71 15 20 Cl -0.02 -0.47 29.13 -2.72 -0.08 -0.55 15 21 C -0.19 -4.57 9.89 22.63 0.22 -4.34 15 22 C 0.20 5.25 6.85 38.67 0.27 5.52 15 23 N -0.83 -14.57 9.08 -50.48 -0.46 -15.03 15 24 H 0.31 9.41 8.29 -92.71 -0.77 8.64 15 25 H 0.41 12.64 7.11 -92.70 -0.66 11.98 15 26 H 0.18 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.41 7.04 7.16 -92.71 -0.66 6.38 15 28 H 0.42 4.51 8.87 -92.71 -0.82 3.69 15 Total: -1.00 -55.93 291.46 5.02 -50.91 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.84 Total: 15.26 kcal Atomic # 6 Polarization: 33.35 SS G_CDS: 5.15 Total: 38.50 kcal Atomic # 7 Polarization: -135.81 SS G_CDS: -1.24 Total: -137.05 kcal Atomic # 14 Polarization: 30.90 SS G_CDS: 2.03 Total: 32.93 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -55.93 5.02 -50.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.838 kcal (2) G-P(sol) polarization free energy of solvation -55.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds