Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47313 * 2 1 4 4 C 1.53008 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47062 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00272 * 85.00116 * 5 4 3 7 7 H 1.07993 * 120.00629 * 213.14974 * 6 5 4 8 8 C 1.38819 * 119.99606 * 33.42078 * 6 5 4 9 9 N 1.31612 * 120.00032 * 24.02102 * 8 6 5 10 10 Si 1.86804 * 119.99853 * 204.01995 * 8 6 5 11 11 H 1.48501 * 109.46870 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47024 * 120.00112 * 10 8 6 13 13 H 1.48497 * 109.47299 * 240.00105 * 10 8 6 14 14 S 1.65601 * 119.99884 * 265.00068 * 5 4 3 15 15 O 1.42089 * 106.40499 * 18.49619 * 14 5 4 16 16 O 1.42104 * 106.40177 * 151.41911 * 14 5 4 17 17 C 1.76200 * 107.21678 * 264.95336 * 14 5 4 18 18 N 1.29025 * 124.91500 * 359.69842 * 17 14 5 19 19 C 1.31791 * 117.12264 * 179.81180 * 18 17 14 20 20 C 1.33639 * 114.49710 * 0.47185 * 19 18 17 21 21 S 1.70978 * 124.91520 * 180.02562 * 17 14 5 22 22 H 1.09002 * 109.46540 * 60.00103 * 1 2 3 23 23 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47072 * 300.00450 * 1 2 3 25 25 H 1.09000 * 109.47589 * 239.99454 * 2 1 3 26 26 H 1.09004 * 109.47198 * 120.00245 * 2 1 3 27 27 H 1.09000 * 109.47420 * 59.99763 * 3 2 1 28 28 H 1.08998 * 109.47474 * 299.99919 * 3 2 1 29 29 H 1.08999 * 109.47052 * 60.00166 * 4 3 2 30 30 H 1.08995 * 109.46865 * 299.99642 * 4 3 2 31 31 H 0.97001 * 120.00320 * 179.97438 * 9 8 6 32 32 H 1.08000 * 122.75078 * 180.22711 * 19 18 17 33 33 H 1.08002 * 126.03606 * 179.71877 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1887 3.5044 1.1810 7 1 4.0182 4.5703 1.2117 8 6 4.5456 2.8251 2.3379 9 7 5.2029 1.6877 2.2570 10 14 4.0929 3.5254 4.0095 11 1 3.3609 4.8047 3.8284 12 1 3.2283 2.5591 4.7333 13 1 5.3291 3.7687 4.7955 14 16 4.4528 3.5617 -1.4290 15 8 3.8225 2.8096 -2.4565 16 8 4.2320 4.9523 -1.2366 17 6 6.1882 3.3607 -1.6582 18 7 6.9756 2.7501 -0.8385 19 6 8.2509 2.6866 -1.1649 20 6 8.5577 3.2852 -2.3197 21 16 7.0739 3.9533 -2.9953 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.9338 0.9285 -0.8891 30 1 3.9330 0.9288 0.8909 31 1 5.4526 1.2132 3.0653 32 1 8.9882 2.1948 -0.5477 33 1 9.5416 3.3490 -2.7604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187877841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -33.151874 kcal Electronic energy + Delta-G solvation = -19660.002563 eV Core-core repulsion = 16553.825230 eV Total energy + Delta-G solvation = -3106.177333 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.82863 -36.54389 -35.67301 -34.35991 -33.92650 -31.67626 -29.86678 -28.21195 -24.98417 -24.89360 -22.36969 -20.47271 -20.30173 -18.79278 -17.98710 -16.85134 -16.32423 -15.58337 -14.96794 -14.73818 -14.54458 -14.35657 -13.82681 -13.43537 -13.21400 -13.09823 -12.36325 -12.28416 -11.68053 -11.56723 -11.42977 -11.13931 -10.94221 -10.75526 -10.68004 -10.63515 -10.59899 -10.43806 -10.30002 -10.07972 -9.71245 -9.34169 -9.03243 -8.95784 -8.62095 -7.93601 -6.70349 -4.17668 0.99296 1.60058 1.99110 2.13888 3.03536 3.11150 3.18512 3.33425 3.86414 4.28357 4.59361 4.99454 5.20801 5.39940 5.50990 5.52783 5.66880 5.85435 5.98664 6.06217 6.26056 6.30920 6.36112 6.43043 6.51341 6.67135 6.80093 6.86741 7.08513 7.25355 7.50321 8.16468 8.22017 8.51876 9.04138 10.18981 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.007801 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.394365 B = 3588.217073 C = 4606.270670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.130 4.130 4 C 0.124 3.876 5 N -0.759 5.759 6 C -0.204 4.204 7 H 0.116 0.884 8 C 0.037 3.963 9 N -0.782 5.782 10 Si 0.924 3.076 11 H -0.258 1.258 12 H -0.273 1.273 13 H -0.276 1.276 14 S 2.471 3.529 15 O -1.000 7.000 16 O -0.980 6.980 17 C -0.453 4.453 18 N -0.363 5.363 19 C 0.023 3.977 20 C -0.254 4.254 21 S 0.125 5.875 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.278 0.722 32 H 0.173 0.827 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 -2.348 -1.003 2.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.170 4.170 4 C -0.003 4.003 5 N -0.580 5.580 6 C -0.361 4.361 7 H 0.134 0.866 8 C -0.181 4.181 9 N -0.419 5.419 10 Si 0.748 3.252 11 H -0.182 1.182 12 H -0.198 1.198 13 H -0.202 1.202 14 S 2.567 3.433 15 O -0.988 6.988 16 O -0.968 6.968 17 C -0.800 4.800 18 N -0.077 5.077 19 C -0.132 4.132 20 C -0.394 4.394 21 S 0.377 5.623 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.190 0.810 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.240 -1.702 -2.394 2.947 hybrid contribution 1.752 -0.329 1.125 2.108 sum 1.992 -2.031 -1.268 3.115 Atomic orbital electron populations 1.21761 0.96532 1.00709 1.01652 1.21432 0.95117 0.97563 1.01716 1.21959 0.96982 0.95793 1.02220 1.21461 0.91972 0.82817 1.04039 1.54202 1.60922 1.22894 1.19933 1.20191 1.37131 0.95974 0.82841 0.86645 1.25969 0.94136 0.96577 1.01439 1.70051 1.26857 1.14211 1.30785 0.85879 0.78964 0.80050 0.80267 1.18172 1.19818 1.20152 1.16243 0.74303 0.75866 0.76882 1.93315 1.73921 1.71334 1.60234 1.93343 1.83969 1.33549 1.85985 1.42732 1.32028 1.06753 0.98518 1.66453 1.01796 1.12172 1.27279 1.22314 0.93735 1.01553 0.95613 1.27201 1.02657 1.07703 1.01822 1.83657 0.99877 1.52278 1.26507 0.92956 0.93442 0.92908 0.92306 0.92091 0.91380 0.92467 0.92501 0.87434 0.91122 0.80972 0.81046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.89 5.93 -26.73 -0.16 -2.05 16 3 C -0.13 -2.48 5.51 -26.73 -0.15 -2.63 16 4 C 0.12 2.70 4.97 -4.04 -0.02 2.68 16 5 N -0.76 -18.25 2.82 -59.91 -0.17 -18.42 16 6 C -0.20 -4.92 9.17 -15.06 -0.14 -5.05 16 7 H 0.12 2.81 7.45 -52.49 -0.39 2.42 16 8 C 0.04 0.83 4.97 -17.43 -0.09 0.74 16 9 N -0.78 -17.87 11.29 55.49 0.63 -17.24 16 10 Si 0.92 17.47 29.62 -169.99 -5.03 12.44 16 11 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 12 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 13 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 14 S 2.47 62.06 5.77 -107.50 -0.62 61.44 16 15 O -1.00 -26.05 16.82 -57.17 -0.96 -27.01 16 16 O -0.98 -26.50 17.01 -57.17 -0.97 -27.47 16 17 C -0.45 -10.57 7.37 51.58 0.38 -10.18 16 18 N -0.36 -8.27 10.51 -14.93 -0.16 -8.43 16 19 C 0.02 0.42 11.35 -19.18 -0.22 0.20 16 20 C -0.25 -4.19 11.37 29.12 0.33 -3.86 16 21 S 0.12 2.41 23.20 -107.50 -2.49 -0.09 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.25 7.47 -51.93 -0.39 0.87 16 30 H 0.11 2.40 5.31 -51.93 -0.28 2.12 16 31 H 0.28 5.85 8.31 -40.82 -0.34 5.51 16 32 H 0.17 2.64 8.06 -52.49 -0.42 2.21 16 33 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -29.06 310.56 -8.79 -37.85 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.99 Total: 4.04 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 0.31 Total: -21.78 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.30 Total: -44.09 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -1.93 Total: -54.48 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 16 Polarization: 64.46 SS G_CDS: -3.11 Total: 61.35 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.06 -8.79 -37.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187877841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.696 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds