Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47313 * 2 1 4 4 C 1.53008 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47062 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00272 * 85.00116 * 5 4 3 7 7 H 1.07993 * 120.00629 * 213.14974 * 6 5 4 8 8 C 1.38819 * 119.99606 * 33.42078 * 6 5 4 9 9 N 1.31612 * 120.00032 * 24.02102 * 8 6 5 10 10 Si 1.86804 * 119.99853 * 204.01995 * 8 6 5 11 11 H 1.48501 * 109.46870 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47024 * 120.00112 * 10 8 6 13 13 H 1.48497 * 109.47299 * 240.00105 * 10 8 6 14 14 S 1.65601 * 119.99884 * 265.00068 * 5 4 3 15 15 O 1.42089 * 106.40499 * 18.49619 * 14 5 4 16 16 O 1.42104 * 106.40177 * 151.41911 * 14 5 4 17 17 C 1.76200 * 107.21678 * 264.95336 * 14 5 4 18 18 N 1.29025 * 124.91500 * 359.69842 * 17 14 5 19 19 C 1.31791 * 117.12264 * 179.81180 * 18 17 14 20 20 C 1.33639 * 114.49710 * 0.47185 * 19 18 17 21 21 S 1.70978 * 124.91520 * 180.02562 * 17 14 5 22 22 H 1.09002 * 109.46540 * 60.00103 * 1 2 3 23 23 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47072 * 300.00450 * 1 2 3 25 25 H 1.09000 * 109.47589 * 239.99454 * 2 1 3 26 26 H 1.09004 * 109.47198 * 120.00245 * 2 1 3 27 27 H 1.09000 * 109.47420 * 59.99763 * 3 2 1 28 28 H 1.08998 * 109.47474 * 299.99919 * 3 2 1 29 29 H 1.08999 * 109.47052 * 60.00166 * 4 3 2 30 30 H 1.08995 * 109.46865 * 299.99642 * 4 3 2 31 31 H 0.97001 * 120.00320 * 179.97438 * 9 8 6 32 32 H 1.08000 * 122.75078 * 180.22711 * 19 18 17 33 33 H 1.08002 * 126.03606 * 179.71877 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1887 3.5044 1.1810 7 1 4.0182 4.5703 1.2117 8 6 4.5456 2.8251 2.3379 9 7 5.2029 1.6877 2.2570 10 14 4.0929 3.5254 4.0095 11 1 3.3609 4.8047 3.8284 12 1 3.2283 2.5591 4.7333 13 1 5.3291 3.7687 4.7955 14 16 4.4528 3.5617 -1.4290 15 8 3.8225 2.8096 -2.4565 16 8 4.2320 4.9523 -1.2366 17 6 6.1882 3.3607 -1.6582 18 7 6.9756 2.7501 -0.8385 19 6 8.2509 2.6866 -1.1649 20 6 8.5577 3.2852 -2.3197 21 16 7.0739 3.9533 -2.9953 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9563 -0.8900 29 1 3.9338 0.9285 -0.8891 30 1 3.9330 0.9288 0.8909 31 1 5.4526 1.2132 3.0653 32 1 8.9882 2.1948 -0.5477 33 1 9.5416 3.3490 -2.7604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187877841.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -53.232116 kcal Electronic energy + Delta-G solvation = -19660.873308 eV Core-core repulsion = 16553.825230 eV Total energy + Delta-G solvation = -3107.048078 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.36386 -38.25887 -37.61538 -36.31301 -35.40893 -33.41957 -31.34739 -29.72947 -26.61760 -26.54430 -23.90268 -21.96697 -21.78650 -20.50757 -19.62256 -18.69338 -18.12995 -17.27395 -16.76177 -16.38116 -16.02881 -15.84427 -15.43256 -14.99618 -14.78783 -14.52747 -13.94175 -13.78009 -13.25607 -13.13529 -13.01732 -12.69923 -12.60117 -12.58943 -12.54674 -12.40135 -12.06802 -11.90773 -11.79177 -11.61786 -11.30242 -11.06249 -10.57351 -10.53166 -10.15379 -9.70969 -8.46640 -6.02920 -0.53796 -0.13254 0.39669 0.64883 1.52796 1.57628 1.70263 1.81625 2.22499 2.53803 2.81061 3.16575 3.78185 4.08388 4.19202 4.21341 4.24459 4.38682 4.43492 4.52361 4.89133 4.93316 5.00912 5.08378 5.12756 5.23216 5.26239 5.44031 5.46712 5.63672 5.74687 6.34311 6.66232 6.70068 7.22467 8.43723 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.007801 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.394365 B = 3588.217073 C = 4606.270670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.126 4.126 4 C 0.125 3.875 5 N -0.761 5.761 6 C -0.216 4.216 7 H 0.105 0.895 8 C 0.012 3.988 9 N -0.792 5.792 10 Si 0.988 3.012 11 H -0.260 1.260 12 H -0.258 1.258 13 H -0.272 1.272 14 S 2.454 3.546 15 O -1.025 7.025 16 O -1.015 7.015 17 C -0.507 4.507 18 N -0.386 5.386 19 C -0.005 4.005 20 C -0.211 4.211 21 S 0.132 5.868 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.290 0.710 32 H 0.205 0.795 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -3.191 0.376 3.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.001 4.001 5 N -0.581 5.581 6 C -0.375 4.375 7 H 0.122 0.878 8 C -0.206 4.206 9 N -0.429 5.429 10 Si 0.808 3.192 11 H -0.184 1.184 12 H -0.183 1.183 13 H -0.197 1.197 14 S 2.556 3.444 15 O -1.014 7.014 16 O -1.004 7.004 17 C -0.855 4.855 18 N -0.102 5.102 19 C -0.159 4.159 20 C -0.350 4.350 21 S 0.383 5.617 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.222 0.778 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.280 -2.568 -1.054 3.056 hybrid contribution 1.621 -0.103 0.725 1.779 sum 2.901 -2.671 -0.328 3.957 Atomic orbital electron populations 1.21735 0.94444 1.02282 1.01837 1.21427 0.96928 0.95001 1.02140 1.21944 0.95044 0.98160 1.01435 1.21560 0.93649 0.81792 1.03126 1.54395 1.60590 1.23501 1.19602 1.20397 1.37671 0.96055 0.83417 0.87773 1.26710 0.93305 0.96580 1.03976 1.70075 1.25933 1.14410 1.32459 0.84951 0.78842 0.79526 0.75833 1.18383 1.18259 1.19708 1.17423 0.74720 0.75151 0.77155 1.93235 1.75214 1.71384 1.61590 1.93254 1.85081 1.35682 1.86382 1.42042 1.32417 1.09999 1.01076 1.66401 1.03563 1.12114 1.28088 1.22848 0.92923 1.02915 0.97202 1.27778 1.03321 1.03873 1.00076 1.83513 1.01123 1.51907 1.25118 0.93243 0.91158 0.92324 0.92357 0.91202 0.91256 0.94085 0.93689 0.87743 0.89935 0.77808 0.75778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.59 5.93 30.59 0.18 -3.41 16 3 C -0.13 -4.91 5.51 30.60 0.17 -4.74 16 4 C 0.12 5.60 4.97 86.38 0.43 6.03 16 5 N -0.76 -37.89 2.82 -343.45 -0.97 -38.86 16 6 C -0.22 -10.59 9.17 84.04 0.77 -9.82 16 7 H 0.10 5.25 7.45 -2.91 -0.02 5.23 16 8 C 0.01 0.53 4.97 84.86 0.42 0.95 16 9 N -0.79 -35.49 11.29 21.65 0.24 -35.24 16 10 Si 0.99 34.53 29.62 68.60 2.03 36.56 16 11 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 12 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 13 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 14 S 2.45 129.35 5.77 -56.49 -0.33 129.02 16 15 O -1.03 -56.42 16.82 -128.00 -2.15 -58.58 16 16 O -1.01 -57.91 17.01 -128.00 -2.18 -60.09 16 17 C -0.51 -24.21 7.37 130.65 0.96 -23.25 16 18 N -0.39 -17.63 10.51 -201.14 -2.11 -19.74 16 19 C -0.01 -0.19 11.35 83.65 0.95 0.76 16 20 C -0.21 -6.30 11.37 66.78 0.76 -5.54 16 21 S 0.13 5.06 23.20 -56.49 -1.31 3.75 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 26 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 2.08 7.47 -2.39 -0.02 2.06 16 30 H 0.11 4.70 5.31 -2.39 -0.01 4.69 16 31 H 0.29 11.68 8.31 -92.71 -0.77 10.91 16 32 H 0.21 5.63 8.06 -2.91 -0.02 5.61 16 33 H 0.23 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -64.91 310.56 -0.30 -65.21 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 1.11 Total: 19.93 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 5.36 Total: -41.97 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -2.84 Total: -93.84 kcal Atomic # 8 Polarization: -114.33 SS G_CDS: -4.33 Total: -118.66 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 2.03 Total: 36.56 kcal Atomic # 16 Polarization: 134.41 SS G_CDS: -1.64 Total: 132.77 kcal Total: -64.91 -0.30 -65.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187877841.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.978 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds