Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86798 * 120.00210 * 2 1 4 4 H 1.48499 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47204 * 299.99932 * 3 2 1 6 6 H 1.48499 * 109.46950 * 60.00205 * 3 2 1 7 7 C 1.38884 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99717 * 180.02562 * 7 2 1 9 9 N 1.37047 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00179 * 180.02562 * 9 7 2 11 11 S 1.71202 * 119.99612 * 359.97438 * 10 9 7 12 12 N 1.34775 * 119.99909 * 180.02562 * 10 9 7 13 13 C 1.39854 * 119.99394 * 185.53011 * 12 10 9 14 14 C 1.38894 * 120.07348 * 221.69761 * 13 12 10 15 15 C 1.38102 * 119.93064 * 179.70277 * 14 13 12 16 16 C 1.38283 * 120.07053 * 0.26144 * 15 14 13 17 17 C 1.50706 * 119.92605 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.46743 * 90.00052 * 17 16 15 19 19 F 1.39902 * 109.47029 * 210.00004 * 17 16 15 20 20 F 1.39901 * 109.47124 * 329.99937 * 17 16 15 21 21 C 1.38289 * 120.14765 * 0.02562 * 16 15 14 22 22 C 1.38108 * 120.06909 * 359.97438 * 21 16 15 23 23 H 0.97002 * 119.99705 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99858 * 359.97438 * 9 7 2 25 25 H 0.96993 * 120.00306 * 5.53226 * 12 10 9 26 26 H 1.08002 * 120.03294 * 359.97438 * 14 13 12 27 27 H 1.07999 * 119.96240 * 180.27812 * 15 14 13 28 28 H 1.08002 * 119.96415 * 180.02562 * 21 16 15 29 29 H 1.08000 * 120.03392 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7088 1.3463 0.0006 5 1 1.8901 2.3964 -1.2125 6 1 1.8901 2.3963 1.2125 7 6 2.0092 -1.2028 -0.0005 8 1 3.0892 -1.2028 -0.0001 9 7 1.3239 -2.3896 -0.0005 10 6 1.9977 -3.5569 -0.0005 11 16 3.7098 -3.5568 -0.0012 12 7 1.3238 -4.7240 -0.0011 13 6 2.0182 -5.9324 0.1157 14 6 1.6554 -7.0219 -0.6657 15 6 2.3471 -8.2118 -0.5524 16 6 3.3964 -8.3210 0.3416 17 6 4.1486 -9.6213 0.4629 18 9 5.2206 -9.6254 -0.4360 19 9 4.6336 -9.7594 1.7679 20 9 3.2898 -10.6859 0.1695 21 6 3.7564 -7.2400 1.1253 22 6 3.0687 -6.0472 1.0169 23 1 -0.4850 0.8401 -0.0004 24 1 0.3539 -2.3896 0.0002 25 1 0.3573 -4.7260 -0.0824 26 1 0.8361 -6.9372 -1.3642 27 1 2.0683 -9.0580 -1.1630 28 1 4.5766 -7.3284 1.8223 29 1 3.3506 -5.2032 1.6290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196196082.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -114.021057 kcal Electronic energy + Delta-G solvation = -19863.175253 eV Core-core repulsion = 16076.190477 eV Total energy + Delta-G solvation = -3786.984775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.00656 -47.54089 -47.45737 -39.62512 -37.66219 -35.16584 -32.51762 -30.84978 -30.17883 -26.25053 -24.87885 -23.39893 -22.17374 -21.43413 -19.13173 -18.37438 -18.30398 -18.22039 -17.73795 -16.69776 -15.41566 -14.91916 -14.69577 -14.37720 -14.31863 -14.19688 -14.01725 -13.94723 -13.71566 -13.64675 -13.38551 -13.14002 -13.01499 -12.50834 -12.11595 -11.50578 -11.38954 -11.09859 -11.01709 -10.61250 -10.31345 -10.06401 -9.25291 -8.79757 -8.20064 -7.27103 -6.77555 -6.02253 -4.51914 1.15119 1.64481 2.36147 2.85209 2.93259 3.00795 3.01756 3.19039 3.63341 3.80555 3.88444 3.98020 4.21935 4.57122 4.62808 4.77268 5.08607 5.10698 5.53849 5.69723 5.83034 6.15582 6.28543 6.54241 6.59713 6.83337 6.91107 7.01678 7.36990 7.79606 8.07154 8.57199 8.71855 9.85228 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.042929 B = 0.003446 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.085348 B = 8122.532135 C = 8481.584111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.035 3.965 3 Si 0.953 3.047 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.278 4.278 8 H 0.151 0.849 9 N -0.448 5.448 10 C 0.416 3.584 11 S -0.737 6.737 12 N -0.663 5.663 13 C 0.214 3.786 14 C -0.154 4.154 15 C -0.065 4.065 16 C -0.209 4.209 17 C 0.511 3.489 18 F -0.180 7.180 19 F -0.181 7.181 20 F -0.184 7.184 21 C -0.066 4.066 22 C -0.079 4.079 23 H 0.289 0.711 24 H 0.395 0.605 25 H 0.395 0.605 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -11.658 1.035 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.176 1.176 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.414 4.414 8 H 0.168 0.832 9 N -0.047 5.047 10 C 0.056 3.944 11 S -0.606 6.606 12 N -0.293 5.293 13 C 0.116 3.884 14 C -0.176 4.176 15 C -0.084 4.084 16 C -0.211 4.211 17 C 0.457 3.543 18 F -0.162 7.162 19 F -0.163 7.163 20 F -0.165 7.165 21 C -0.087 4.087 22 C -0.103 4.103 23 H 0.099 0.901 24 H 0.231 0.769 25 H 0.231 0.769 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.417 -11.212 1.023 11.266 hybrid contribution -1.578 0.595 -0.215 1.700 sum -1.995 -10.618 0.808 10.833 Atomic orbital electron populations 1.69663 1.06812 1.30717 1.41885 1.25896 0.95864 1.01715 0.94150 0.85399 0.80522 0.78053 0.78438 1.17577 1.19781 1.19769 1.21051 0.96138 0.79812 1.44408 0.83203 1.41153 1.09222 1.04111 1.50212 1.20895 0.94175 0.80270 0.99030 1.92483 0.92617 1.93458 1.82029 1.41555 1.08325 1.02580 1.76831 1.17491 0.93785 0.83984 0.93138 1.20757 1.03353 0.93109 1.00380 1.20435 0.93729 0.97628 0.96652 1.19758 1.02010 0.93316 1.06052 1.18382 0.77409 0.85041 0.73463 1.93212 1.57893 1.96845 1.68224 1.93164 1.88867 1.96389 1.37836 1.93151 1.70286 1.59841 1.93240 1.20652 0.99193 0.91067 0.97763 1.21527 0.94546 0.96746 0.97490 0.90089 0.76926 0.76886 0.85435 0.85290 0.85128 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -19.48 13.05 55.49 0.72 -18.76 15 2 C 0.03 0.78 5.50 -17.46 -0.10 0.69 15 3 Si 0.95 18.04 29.55 -169.99 -5.02 13.02 15 4 H -0.25 -4.90 7.11 56.52 0.40 -4.50 15 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 7 C -0.28 -6.68 9.51 -14.98 -0.14 -6.82 15 8 H 0.15 3.88 6.22 -52.48 -0.33 3.56 15 9 N -0.45 -9.87 5.29 -12.53 -0.07 -9.94 15 10 C 0.42 9.03 7.71 -86.92 -0.67 8.36 15 11 S -0.74 -18.59 24.45 -107.50 -2.63 -21.22 15 12 N -0.66 -11.48 5.33 -11.41 -0.06 -11.54 15 13 C 0.21 3.59 5.90 -83.71 -0.49 3.09 15 14 C -0.15 -2.17 9.97 -39.39 -0.39 -2.56 15 15 C -0.06 -0.87 9.39 -39.61 -0.37 -1.24 15 16 C -0.21 -2.99 5.46 -104.58 -0.57 -3.57 15 17 C 0.51 6.87 3.36 36.01 0.12 6.99 15 18 F -0.18 -2.57 17.30 2.25 0.04 -2.53 15 19 F -0.18 -2.42 16.46 2.25 0.04 -2.39 15 20 F -0.18 -2.34 16.46 2.25 0.04 -2.30 15 21 C -0.07 -1.01 9.39 -39.61 -0.37 -1.39 15 22 C -0.08 -1.39 7.86 -39.39 -0.31 -1.70 15 23 H 0.29 6.09 8.31 -40.82 -0.34 5.75 15 24 H 0.39 8.07 7.92 -40.82 -0.32 7.75 15 25 H 0.39 5.51 8.84 -40.82 -0.36 5.15 15 26 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 27 H 0.13 1.42 7.60 -52.49 -0.40 1.02 15 28 H 0.13 1.81 7.60 -52.49 -0.40 1.41 15 29 H 0.16 3.07 6.28 -50.15 -0.31 2.76 15 LS Contribution 284.07 15.07 4.28 4.28 Total: -1.00 -27.25 284.07 -7.64 -34.89 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -1.68 Total: 14.62 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -3.30 Total: 1.86 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.60 Total: -40.24 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.02 Total: 13.02 kcal Atomic # 16 Polarization: -18.59 SS G_CDS: -2.63 Total: -21.22 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.25 -7.64 -34.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196196082.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.131 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds