Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86798 * 120.00210 * 2 1 4 4 H 1.48499 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47204 * 299.99932 * 3 2 1 6 6 H 1.48499 * 109.46950 * 60.00205 * 3 2 1 7 7 C 1.38884 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99717 * 180.02562 * 7 2 1 9 9 N 1.37047 * 120.00111 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00179 * 180.02562 * 9 7 2 11 11 S 1.71202 * 119.99612 * 359.97438 * 10 9 7 12 12 N 1.34775 * 119.99909 * 180.02562 * 10 9 7 13 13 C 1.39854 * 119.99394 * 185.53011 * 12 10 9 14 14 C 1.38894 * 120.07348 * 221.69761 * 13 12 10 15 15 C 1.38102 * 119.93064 * 179.70277 * 14 13 12 16 16 C 1.38283 * 120.07053 * 0.26144 * 15 14 13 17 17 C 1.50706 * 119.92605 * 179.97438 * 16 15 14 18 18 F 1.39898 * 109.46743 * 90.00052 * 17 16 15 19 19 F 1.39902 * 109.47029 * 210.00004 * 17 16 15 20 20 F 1.39901 * 109.47124 * 329.99937 * 17 16 15 21 21 C 1.38289 * 120.14765 * 0.02562 * 16 15 14 22 22 C 1.38108 * 120.06909 * 359.97438 * 21 16 15 23 23 H 0.97002 * 119.99705 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99858 * 359.97438 * 9 7 2 25 25 H 0.96993 * 120.00306 * 5.53226 * 12 10 9 26 26 H 1.08002 * 120.03294 * 359.97438 * 14 13 12 27 27 H 1.07999 * 119.96240 * 180.27812 * 15 14 13 28 28 H 1.08002 * 119.96415 * 180.02562 * 21 16 15 29 29 H 1.08000 * 120.03392 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.7088 1.3463 0.0006 5 1 1.8901 2.3964 -1.2125 6 1 1.8901 2.3963 1.2125 7 6 2.0092 -1.2028 -0.0005 8 1 3.0892 -1.2028 -0.0001 9 7 1.3239 -2.3896 -0.0005 10 6 1.9977 -3.5569 -0.0005 11 16 3.7098 -3.5568 -0.0012 12 7 1.3238 -4.7240 -0.0011 13 6 2.0182 -5.9324 0.1157 14 6 1.6554 -7.0219 -0.6657 15 6 2.3471 -8.2118 -0.5524 16 6 3.3964 -8.3210 0.3416 17 6 4.1486 -9.6213 0.4629 18 9 5.2206 -9.6254 -0.4360 19 9 4.6336 -9.7594 1.7679 20 9 3.2898 -10.6859 0.1695 21 6 3.7564 -7.2400 1.1253 22 6 3.0687 -6.0472 1.0169 23 1 -0.4850 0.8401 -0.0004 24 1 0.3539 -2.3896 0.0002 25 1 0.3573 -4.7260 -0.0824 26 1 0.8361 -6.9372 -1.3642 27 1 2.0683 -9.0580 -1.1630 28 1 4.5766 -7.3284 1.8223 29 1 3.3506 -5.2032 1.6290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196196082.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = -128.230958 kcal Electronic energy + Delta-G solvation = -19863.791440 eV Core-core repulsion = 16076.190477 eV Total energy + Delta-G solvation = -3787.600963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.040 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.09105 -48.60377 -48.55912 -40.97128 -39.22569 -36.68121 -34.17704 -32.05459 -31.50797 -27.81545 -26.22817 -24.90280 -23.51773 -22.76677 -20.78014 -19.65883 -19.41948 -19.34926 -19.10021 -18.17330 -17.09375 -16.33728 -16.11776 -15.72241 -15.63907 -15.43390 -15.31853 -15.02615 -14.87696 -14.76497 -14.72512 -14.35848 -14.25684 -13.87241 -13.72482 -12.99010 -12.90030 -12.54770 -12.31915 -12.12374 -11.95964 -11.74875 -10.82707 -10.01299 -9.63411 -8.97930 -8.66170 -7.93533 -6.33678 -0.14059 0.45096 0.73884 1.35837 1.46100 1.49522 1.57349 1.74567 2.02574 2.28780 2.63188 2.82292 2.83420 3.12669 3.14623 3.52206 3.93755 4.00113 4.35593 4.46899 4.61746 4.94210 5.09705 5.12055 5.20651 5.31525 5.47731 5.57259 5.95069 6.31142 6.37670 6.81124 7.01316 8.15365 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.042929 B = 0.003446 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.085348 B = 8122.532135 C = 8481.584111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.011 3.989 3 Si 1.009 2.991 4 H -0.267 1.267 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.312 4.312 8 H 0.125 0.875 9 N -0.448 5.448 10 C 0.437 3.563 11 S -0.804 6.804 12 N -0.646 5.646 13 C 0.187 3.813 14 C -0.140 4.140 15 C -0.057 4.057 16 C -0.208 4.208 17 C 0.518 3.482 18 F -0.184 7.184 19 F -0.181 7.181 20 F -0.175 7.175 21 C -0.069 4.069 22 C -0.099 4.099 23 H 0.297 0.703 24 H 0.403 0.597 25 H 0.415 0.585 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.139 0.861 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -12.836 0.306 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.198 4.198 3 Si 0.829 3.171 4 H -0.191 1.191 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.447 4.447 8 H 0.143 0.857 9 N -0.048 5.048 10 C 0.075 3.925 11 S -0.675 6.675 12 N -0.278 5.278 13 C 0.091 3.909 14 C -0.161 4.161 15 C -0.076 4.076 16 C -0.210 4.210 17 C 0.464 3.536 18 F -0.165 7.165 19 F -0.162 7.162 20 F -0.157 7.157 21 C -0.089 4.089 22 C -0.122 4.122 23 H 0.107 0.893 24 H 0.240 0.760 25 H 0.254 0.746 26 H 0.177 0.823 27 H 0.180 0.820 28 H 0.156 0.844 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.691 -12.450 0.302 12.568 hybrid contribution -1.218 0.745 0.029 1.429 sum -2.909 -11.704 0.331 12.065 Atomic orbital electron populations 1.69667 1.07347 1.31825 1.41805 1.26530 0.96572 1.03532 0.93169 0.84612 0.78482 0.74917 0.79045 1.19095 1.18704 1.18688 1.20855 0.95412 0.81108 1.47294 0.85718 1.41037 1.09459 1.03759 1.50516 1.20561 0.92915 0.81495 0.97523 1.92592 0.96421 1.94385 1.84086 1.41363 1.09189 1.01492 1.75730 1.17765 0.94389 0.84428 0.94366 1.21059 1.03553 0.91956 0.99535 1.20845 0.92566 0.98289 0.95949 1.19936 1.02177 0.93298 1.05638 1.18178 0.77230 0.84793 0.73402 1.93211 1.58103 1.96854 1.68376 1.93170 1.88862 1.96366 1.37842 1.93171 1.69972 1.59349 1.93169 1.20724 0.99144 0.90845 0.98228 1.21314 0.95852 0.96786 0.98216 0.89264 0.75957 0.74588 0.82335 0.82015 0.84364 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -39.02 13.05 21.66 0.28 -38.74 15 2 C 0.01 0.50 5.50 84.90 0.47 0.96 15 3 Si 1.01 36.78 29.55 68.60 2.03 38.81 15 4 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 5 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 6 H -0.26 -9.08 7.11 99.48 0.71 -8.38 15 7 C -0.31 -15.24 9.51 84.03 0.80 -14.44 15 8 H 0.13 6.73 6.22 -2.91 -0.02 6.71 15 9 N -0.45 -19.89 5.29 -193.56 -1.02 -20.91 15 10 C 0.44 19.17 7.71 179.06 1.38 20.54 15 11 S -0.80 -41.82 24.45 -56.49 -1.38 -43.20 15 12 N -0.65 -21.78 5.33 -190.00 -1.01 -22.79 15 13 C 0.19 6.05 5.90 38.17 0.23 6.28 15 14 C -0.14 -3.49 9.97 22.39 0.22 -3.27 15 15 C -0.06 -1.33 9.39 22.25 0.21 -1.12 15 16 C -0.21 -5.50 5.46 -19.84 -0.11 -5.61 15 17 C 0.52 12.69 3.36 71.24 0.24 12.93 15 18 F -0.18 -4.85 17.30 44.97 0.78 -4.07 15 19 F -0.18 -4.52 16.46 44.97 0.74 -3.78 15 20 F -0.18 -3.91 16.46 44.97 0.74 -3.17 15 21 C -0.07 -2.09 9.39 22.25 0.21 -1.88 15 22 C -0.10 -3.48 7.86 22.40 0.18 -3.30 15 23 H 0.30 12.16 8.31 -92.71 -0.77 11.39 15 24 H 0.40 16.37 7.92 -92.71 -0.73 15.64 15 25 H 0.41 10.81 8.84 -92.71 -0.82 9.99 15 26 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.16 2.74 7.60 -2.91 -0.02 2.72 15 28 H 0.14 3.83 7.60 -2.91 -0.02 3.81 15 29 H 0.13 5.20 6.28 -4.39 -0.03 5.17 15 Total: -1.00 -59.35 284.07 4.65 -54.70 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.32 Total: 32.07 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 3.82 Total: 11.09 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.75 Total: -82.44 kcal Atomic # 9 Polarization: -13.28 SS G_CDS: 2.26 Total: -11.02 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: -41.82 SS G_CDS: -1.38 Total: -43.20 kcal Total: -59.35 4.65 -54.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196196082.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.535 kcal (2) G-P(sol) polarization free energy of solvation -59.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds