Wall clock time and date at job start Tue Mar 31 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86806 * 120.00249 * 2 1 4 4 H 1.48506 * 109.46688 * 269.99683 * 3 2 1 5 5 H 1.48503 * 109.46921 * 29.99530 * 3 2 1 6 6 H 1.48495 * 109.47318 * 149.99654 * 3 2 1 7 7 C 1.38629 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00089 * 0.02562 * 7 2 1 9 9 O 1.34808 * 120.00138 * 180.02562 * 7 2 1 10 10 C 1.35701 * 117.00301 * 185.06243 * 9 7 2 11 11 C 1.38738 * 120.12707 * 354.39899 * 10 9 7 12 12 C 1.38138 * 120.04206 * 180.31603 * 11 10 9 13 13 C 1.38426 * 120.32034 * 359.68188 * 12 11 10 14 14 C 1.38047 * 120.25874 * 0.02562 * 13 12 11 15 15 C 1.39244 * 119.95033 * 0.02562 * 14 13 12 16 16 C 1.48360 * 120.15725 * 180.02562 * 15 14 13 17 17 C 1.36042 * 122.79619 * 130.01939 * 16 15 14 18 18 S 1.70574 * 110.79496 * 179.97438 * 17 16 15 19 19 C 1.75725 * 91.83004 * 0.02562 * 18 17 16 20 20 C 1.46447 * 125.20225 * 179.97438 * 19 18 17 21 21 O 1.21624 * 119.99525 * 180.02562 * 20 19 18 22 22 O 1.34889 * 120.00305 * 0.02562 * 20 19 18 23 23 C 1.36362 * 109.58995 * 0.02562 * 19 18 17 24 24 H 0.97001 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.97964 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.83696 * 179.69864 * 12 11 10 27 27 H 1.07996 * 119.86776 * 180.02562 * 13 12 11 28 28 H 1.08002 * 120.02200 * 179.97438 * 14 13 12 29 29 H 1.08001 * 124.60282 * 0.02562 * 17 16 15 30 30 H 0.96706 * 117.00351 * 179.97438 * 22 20 19 31 31 H 1.07993 * 123.31103 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2006 0.0011 10 6 3.9731 -2.4050 -0.1051 11 6 3.2252 -3.5734 -0.0911 12 6 3.8547 -4.7988 -0.1927 13 6 5.2318 -4.8689 -0.3156 14 6 5.9879 -3.7141 -0.3370 15 6 5.3648 -2.4731 -0.2342 16 6 6.1729 -1.2292 -0.2574 17 6 5.8843 -0.1779 -1.0712 18 16 7.0067 1.0869 -0.8478 19 6 7.8817 0.1710 0.3702 20 6 9.0711 0.6385 1.0853 21 8 9.6035 -0.0766 1.9125 22 8 9.5762 1.8622 0.8265 23 6 7.2843 -1.0420 0.5468 24 1 -0.4850 0.8401 -0.0004 25 1 2.1504 -3.5252 0.0041 26 1 3.2697 -5.7065 -0.1765 27 1 5.7164 -5.8307 -0.3949 28 1 7.0621 -3.7733 -0.4326 29 1 5.0563 -0.1479 -1.7640 30 1 10.3622 2.1270 1.3238 31 1 7.6419 -1.7830 1.2463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206283900.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:13 Heat of formation + Delta-G solvation = -59.236760 kcal Electronic energy + Delta-G solvation = -19790.421640 eV Core-core repulsion = 16515.376479 eV Total energy + Delta-G solvation = -3275.045161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.045 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13121 -39.50144 -37.50199 -36.42062 -35.99016 -32.50125 -31.14960 -29.54441 -28.68818 -25.63281 -25.08649 -23.19280 -21.51171 -20.71955 -19.15104 -18.61142 -17.91453 -17.49411 -17.09577 -15.72683 -15.69994 -15.20839 -14.84173 -14.29591 -13.92813 -13.83569 -13.77111 -13.06307 -12.82349 -12.67742 -12.37813 -12.31249 -12.29486 -11.66860 -11.46680 -11.18701 -10.91027 -10.84397 -10.81955 -10.63827 -10.25407 -9.50293 -8.99579 -8.86594 -8.65716 -7.96397 -7.36092 -6.51345 -4.17686 0.50179 1.59431 1.70667 2.08486 2.18076 2.47817 2.93678 3.08597 3.12468 3.17198 3.32298 4.14045 4.40023 4.71086 4.99487 5.18233 5.20838 5.36025 5.49124 5.61504 5.68151 5.83863 5.99206 6.11441 6.30178 6.37927 6.44881 6.50241 6.64942 7.02693 7.08078 7.20382 7.50177 7.69397 7.78302 7.93168 8.83571 9.44668 10.56043 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.006841 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.990166 B = 4092.149880 C = 5802.321643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.253 1.253 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.206 6.206 10 C 0.173 3.827 11 C -0.220 4.220 12 C -0.070 4.070 13 C -0.205 4.205 14 C -0.060 4.060 15 C -0.116 4.116 16 C -0.055 4.055 17 C -0.198 4.198 18 S 0.232 5.768 19 C -0.286 4.286 20 C 0.563 3.437 21 O -0.513 6.513 22 O -0.514 6.514 23 C -0.018 4.018 24 H 0.280 0.720 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.175 0.825 30 H 0.414 0.586 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.201 0.486 -1.904 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.111 6.111 10 C 0.119 3.881 11 C -0.239 4.239 12 C -0.088 4.088 13 C -0.224 4.224 14 C -0.079 4.079 15 C -0.120 4.120 16 C -0.066 4.066 17 C -0.336 4.336 18 S 0.502 5.498 19 C -0.404 4.404 20 C 0.408 3.592 21 O -0.404 6.404 22 O -0.326 6.326 23 C -0.053 4.053 24 H 0.091 0.909 25 H 0.153 0.847 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.192 0.808 30 H 0.273 0.727 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 14.033 2.060 -2.548 14.411 hybrid contribution 0.160 -0.657 0.987 1.196 sum 14.193 1.403 -1.561 14.347 Atomic orbital electron populations 1.69640 1.05549 1.28584 1.47484 1.24423 0.94966 0.98666 0.95590 0.86380 0.80972 0.81810 0.79208 1.19654 1.20573 1.17718 1.20777 0.76847 0.96675 1.52317 0.87517 1.83573 1.22497 1.25440 1.79550 1.19028 0.90528 0.85754 0.92748 1.21242 1.01200 0.91695 1.09735 1.20898 0.94368 0.96763 0.96764 1.20604 0.93973 0.97328 1.10455 1.20712 0.98640 0.90815 0.97735 1.17387 0.89535 0.91187 1.13849 1.17623 0.96058 0.95476 0.97465 1.25990 1.04735 0.97912 1.04984 1.82921 1.17862 1.16421 1.32577 1.23086 1.04072 1.01783 1.11450 1.19351 0.81960 0.78707 0.79215 1.90927 1.60060 1.56243 1.33163 1.84608 1.47805 1.34360 1.65843 1.20759 0.92796 0.94730 0.96969 0.90938 0.84678 0.87048 0.87126 0.86605 0.80803 0.72731 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 13.96 55.48 0.77 -23.77 16 2 C 0.07 1.82 5.49 -17.52 -0.10 1.73 16 3 Si 0.89 20.74 28.62 -169.99 -4.86 15.87 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.25 -5.92 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.48 9.94 30.88 0.31 -10.17 16 8 H 0.11 2.94 5.44 -52.48 -0.29 2.65 16 9 O -0.21 -5.10 7.25 0.26 0.00 -5.09 16 10 C 0.17 3.78 6.59 -38.76 -0.26 3.53 16 11 C -0.22 -4.50 9.16 -39.43 -0.36 -4.86 16 12 C -0.07 -1.19 10.03 -39.55 -0.40 -1.59 16 13 C -0.20 -3.24 10.03 -39.58 -0.40 -3.64 16 14 C -0.06 -0.99 9.60 -39.28 -0.38 -1.37 16 15 C -0.12 -2.21 5.60 -104.72 -0.59 -2.80 16 16 C -0.05 -0.98 5.16 -106.44 -0.55 -1.53 16 17 C -0.20 -3.40 9.85 29.94 0.29 -3.11 16 18 S 0.23 3.36 22.88 -107.50 -2.46 0.90 16 19 C -0.29 -4.38 6.42 -36.95 -0.24 -4.62 16 20 C 0.56 8.00 8.30 34.04 0.28 8.29 16 21 O -0.51 -8.42 17.61 -19.36 -0.34 -8.76 16 22 O -0.51 -5.44 13.27 -41.01 -0.54 -5.99 16 23 C -0.02 -0.29 9.63 -40.18 -0.39 -0.68 16 24 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.14 2.90 5.64 -52.49 -0.30 2.61 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 29 H 0.17 3.05 7.98 -52.49 -0.42 2.63 16 30 H 0.41 2.25 9.11 45.56 0.42 2.67 16 31 H 0.15 2.34 8.05 -52.49 -0.42 1.91 16 LS Contribution 299.45 15.07 4.51 4.51 Total: -1.00 -30.41 299.45 -7.09 -37.50 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -1.41 Total: 5.64 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.76 Total: -20.82 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.77 Total: -23.77 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.88 Total: -19.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.86 Total: 15.87 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.46 Total: 0.90 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.41 -7.09 -37.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206283900.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.733 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds