Wall clock time and date at job start Tue Mar 31 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86806 * 120.00249 * 2 1 4 4 H 1.48506 * 109.46688 * 269.99683 * 3 2 1 5 5 H 1.48503 * 109.46921 * 29.99530 * 3 2 1 6 6 H 1.48495 * 109.47318 * 149.99654 * 3 2 1 7 7 C 1.38629 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00089 * 0.02562 * 7 2 1 9 9 O 1.34808 * 120.00138 * 180.02562 * 7 2 1 10 10 C 1.35701 * 117.00301 * 185.06243 * 9 7 2 11 11 C 1.38738 * 120.12707 * 354.39899 * 10 9 7 12 12 C 1.38138 * 120.04206 * 180.31603 * 11 10 9 13 13 C 1.38426 * 120.32034 * 359.68188 * 12 11 10 14 14 C 1.38047 * 120.25874 * 0.02562 * 13 12 11 15 15 C 1.39244 * 119.95033 * 0.02562 * 14 13 12 16 16 C 1.48360 * 120.15725 * 180.02562 * 15 14 13 17 17 C 1.36042 * 122.79619 * 130.01939 * 16 15 14 18 18 S 1.70574 * 110.79496 * 179.97438 * 17 16 15 19 19 C 1.75725 * 91.83004 * 0.02562 * 18 17 16 20 20 C 1.46447 * 125.20225 * 179.97438 * 19 18 17 21 21 O 1.21624 * 119.99525 * 180.02562 * 20 19 18 22 22 O 1.34889 * 120.00305 * 0.02562 * 20 19 18 23 23 C 1.36362 * 109.58995 * 0.02562 * 19 18 17 24 24 H 0.97001 * 119.99761 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.97964 * 0.02562 * 11 10 9 26 26 H 1.08000 * 119.83696 * 179.69864 * 12 11 10 27 27 H 1.07996 * 119.86776 * 180.02562 * 13 12 11 28 28 H 1.08002 * 120.02200 * 179.97438 * 14 13 12 29 29 H 1.08001 * 124.60282 * 0.02562 * 17 16 15 30 30 H 0.96706 * 117.00351 * 179.97438 * 22 20 19 31 31 H 1.07993 * 123.31103 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2006 0.0011 10 6 3.9731 -2.4050 -0.1051 11 6 3.2252 -3.5734 -0.0911 12 6 3.8547 -4.7988 -0.1927 13 6 5.2318 -4.8689 -0.3156 14 6 5.9879 -3.7141 -0.3370 15 6 5.3648 -2.4731 -0.2342 16 6 6.1729 -1.2292 -0.2574 17 6 5.8843 -0.1779 -1.0712 18 16 7.0067 1.0869 -0.8478 19 6 7.8817 0.1710 0.3702 20 6 9.0711 0.6385 1.0853 21 8 9.6035 -0.0766 1.9125 22 8 9.5762 1.8622 0.8265 23 6 7.2843 -1.0420 0.5468 24 1 -0.4850 0.8401 -0.0004 25 1 2.1504 -3.5252 0.0041 26 1 3.2697 -5.7065 -0.1765 27 1 5.7164 -5.8307 -0.3949 28 1 7.0621 -3.7733 -0.4326 29 1 5.0563 -0.1479 -1.7640 30 1 10.3622 2.1270 1.3238 31 1 7.6419 -1.7830 1.2463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206283900.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:13 Heat of formation + Delta-G solvation = -77.790350 kcal Electronic energy + Delta-G solvation = -19791.226184 eV Core-core repulsion = 16515.376479 eV Total energy + Delta-G solvation = -3275.849705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.045 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28259 -40.96281 -38.91151 -37.85922 -37.04244 -34.46575 -32.50503 -30.99067 -30.09481 -27.36088 -26.46684 -24.51541 -23.04372 -22.03524 -20.41156 -19.90675 -19.62938 -18.75169 -18.51532 -17.06649 -16.77081 -16.58658 -16.44795 -15.79692 -15.58580 -15.39911 -15.13899 -14.36825 -14.23832 -14.12320 -14.09427 -13.74419 -13.63277 -13.07451 -12.66870 -12.63149 -12.52365 -12.35177 -12.15837 -11.97536 -11.80783 -11.29584 -10.92324 -10.20800 -9.89870 -9.36878 -8.87452 -8.51045 -6.21796 -0.71965 0.31035 0.40719 0.68712 0.83738 1.23141 1.27803 1.31319 1.48278 1.84651 1.98378 2.24895 2.77816 3.04861 3.13896 3.85763 4.03650 4.16409 4.19452 4.27832 4.33624 4.54765 4.64900 4.74362 4.95845 5.06397 5.19686 5.22991 5.44324 5.46182 5.62991 5.73149 5.78906 5.90171 6.23187 6.84073 6.88354 7.58616 8.60512 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.006841 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.990166 B = 4092.149880 C = 5802.321643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.394 4.394 8 H 0.082 0.918 9 O -0.229 6.229 10 C 0.135 3.865 11 C -0.240 4.240 12 C -0.071 4.071 13 C -0.180 4.180 14 C -0.060 4.060 15 C -0.114 4.114 16 C -0.072 4.072 17 C -0.223 4.223 18 S 0.295 5.705 19 C -0.292 4.292 20 C 0.572 3.428 21 O -0.538 6.538 22 O -0.503 6.503 23 C -0.027 4.027 24 H 0.283 0.717 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.439 0.561 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.601 0.342 -2.148 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.471 4.471 8 H 0.099 0.901 9 O -0.136 6.136 10 C 0.085 3.915 11 C -0.259 4.259 12 C -0.089 4.089 13 C -0.198 4.198 14 C -0.078 4.078 15 C -0.117 4.117 16 C -0.084 4.084 17 C -0.361 4.361 18 S 0.565 5.435 19 C -0.410 4.410 20 C 0.416 3.584 21 O -0.430 6.430 22 O -0.317 6.317 23 C -0.061 4.061 24 H 0.093 0.907 25 H 0.129 0.871 26 H 0.159 0.841 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.180 0.820 30 H 0.301 0.699 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.487 1.905 -2.801 17.812 hybrid contribution -0.646 -0.822 1.021 1.461 sum 16.841 1.083 -1.780 16.970 Atomic orbital electron populations 1.69728 1.06872 1.29436 1.50275 1.25150 0.95710 1.01744 0.95705 0.85529 0.79479 0.78095 0.79880 1.18141 1.19737 1.18008 1.20693 0.78255 0.95988 1.52144 0.90090 1.83531 1.20791 1.26847 1.82386 1.19560 0.91990 0.85429 0.94557 1.21291 1.00314 0.93191 1.11132 1.21249 0.95597 0.96322 0.95758 1.21160 0.93190 0.99061 1.06392 1.21191 1.00489 0.89837 0.96285 1.17753 0.88439 0.93184 1.12311 1.17688 0.96786 0.95389 0.98546 1.26084 1.05442 0.99312 1.05311 1.82639 1.15696 1.14167 1.30974 1.23365 1.04452 1.01750 1.11469 1.19128 0.81425 0.79332 0.78497 1.90924 1.60715 1.57228 1.34167 1.84549 1.48988 1.32292 1.65916 1.20730 0.92572 0.95605 0.97200 0.90692 0.87142 0.84092 0.82765 0.83171 0.81989 0.69860 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 13.96 21.61 0.30 -53.98 16 2 C 0.02 0.88 5.49 84.83 0.47 1.34 16 3 Si 0.95 43.76 28.62 68.60 1.96 45.72 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.39 -22.46 9.94 67.91 0.68 -21.78 16 8 H 0.08 4.86 5.44 -2.91 -0.02 4.85 16 9 O -0.23 -11.80 7.25 -21.98 -0.16 -11.96 16 10 C 0.13 6.07 6.59 22.80 0.15 6.22 16 11 C -0.24 -10.14 9.16 22.37 0.20 -9.94 16 12 C -0.07 -2.31 10.03 22.29 0.22 -2.08 16 13 C -0.18 -4.98 10.03 22.27 0.22 -4.76 16 14 C -0.06 -1.78 9.60 22.47 0.22 -1.56 16 15 C -0.11 -4.24 5.60 -19.93 -0.11 -4.36 16 16 C -0.07 -2.50 5.16 -21.04 -0.11 -2.61 16 17 C -0.22 -7.50 9.85 67.31 0.66 -6.84 16 18 S 0.29 7.85 22.88 -56.49 -1.29 6.55 16 19 C -0.29 -8.25 6.42 23.97 0.15 -8.10 16 20 C 0.57 14.61 8.30 69.96 0.58 15.19 16 21 O -0.54 -16.34 17.61 19.43 0.34 -16.00 16 22 O -0.50 -8.82 13.27 -58.03 -0.77 -9.59 16 23 C -0.03 -0.82 9.63 21.88 0.21 -0.61 16 24 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.11 5.15 5.64 -2.91 -0.02 5.13 16 26 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 27 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 29 H 0.16 5.78 7.98 -2.91 -0.02 5.76 16 30 H 0.44 3.07 9.11 -74.05 -0.67 2.39 16 31 H 0.16 4.57 8.05 -2.91 -0.02 4.55 16 Total: -1.00 -68.93 299.45 4.46 -64.47 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.53 Total: 14.67 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.55 Total: -39.88 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.30 Total: -53.98 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.59 Total: -37.55 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.96 Total: 45.72 kcal Atomic # 16 Polarization: 7.85 SS G_CDS: -1.29 Total: 6.55 kcal Total: -68.93 4.46 -64.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206283900.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.321 kcal (2) G-P(sol) polarization free energy of solvation -68.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds