Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86804 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47472 * 270.00197 * 3 2 1 5 5 H 1.48506 * 109.46859 * 30.00561 * 3 2 1 6 6 H 1.48500 * 109.46736 * 149.99999 * 3 2 1 7 7 C 1.38615 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00150 * 359.97438 * 7 2 1 9 9 O 1.34810 * 120.00196 * 180.27386 * 7 2 1 10 10 C 1.35784 * 116.99832 * 174.67330 * 9 7 2 11 11 C 1.38722 * 120.10841 * 5.64603 * 10 9 7 12 12 C 1.38175 * 120.00950 * 179.97438 * 11 10 9 13 13 C 1.38356 * 120.21432 * 0.04354 * 12 11 10 14 14 C 1.38180 * 120.20672 * 359.97438 * 13 12 11 15 15 C 1.38790 * 119.98874 * 359.68207 * 14 13 12 16 16 N 1.39780 * 120.10404 * 180.29612 * 15 14 13 17 17 C 1.39769 * 119.99695 * 254.83832 * 16 15 14 18 18 C 1.39259 * 120.50030 * 355.21742 * 17 16 15 19 19 C 1.38547 * 118.37147 * 179.97438 * 18 17 16 20 20 C 1.38227 * 119.26928 * 0.02562 * 19 18 17 21 21 N 1.31901 * 120.94579 * 359.97438 * 20 19 18 22 22 C 1.31881 * 121.78426 * 359.72649 * 21 20 19 23 23 Cl 1.73604 * 119.68850 * 180.26682 * 22 21 20 24 24 H 0.96996 * 120.00171 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99346 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.89263 * 180.02562 * 12 11 10 27 27 H 1.07995 * 119.89783 * 179.97438 * 13 12 11 28 28 H 1.07996 * 120.00655 * 179.97438 * 14 13 12 29 29 H 0.96997 * 120.00555 * 74.83765 * 16 15 14 30 30 H 1.08002 * 120.80912 * 359.95761 * 18 17 16 31 31 H 1.08002 * 120.36084 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.52245 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0466 -1.4001 5 1 1.4472 2.6527 0.7002 6 1 3.5474 1.4402 0.7001 7 6 2.0090 -1.2004 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3570 -1.2004 0.0050 10 6 3.9730 -2.4054 0.1165 11 6 3.2249 -3.5735 0.1004 12 6 3.8538 -4.7986 0.2134 13 6 5.2296 -4.8655 0.3438 14 6 5.9834 -3.7076 0.3612 15 6 5.3612 -2.4728 0.2411 16 7 6.1220 -1.3003 0.2523 17 6 6.1308 -0.4837 1.3866 18 6 5.3099 -0.7747 2.4733 19 6 5.3544 0.0641 3.5751 20 6 6.2044 1.1541 3.5609 21 7 6.9700 1.4035 2.5162 22 6 6.9636 0.6283 1.4493 23 17 7.9989 1.0038 0.1073 24 1 -0.4850 0.8400 0.0004 25 1 2.1506 -3.5253 -0.0005 26 1 3.2696 -5.7068 0.2003 27 1 5.7159 -5.8257 0.4322 28 1 7.0571 -3.7636 0.4635 29 1 6.6438 -1.0532 -0.5271 30 1 4.6546 -1.6330 2.4573 31 1 4.7312 -0.1312 4.4353 32 1 6.2420 1.8108 4.4174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212595291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = 38.043187 kcal Electronic energy + Delta-G solvation = -20471.126476 eV Core-core repulsion = 17230.548735 eV Total energy + Delta-G solvation = -3240.577741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25950 -39.24079 -36.92146 -36.38624 -35.39743 -32.51377 -31.71914 -30.47562 -29.39107 -27.78857 -25.39112 -23.59247 -22.90858 -21.66283 -21.04181 -18.06140 -17.77081 -17.66439 -16.91052 -16.21480 -15.25162 -15.10216 -14.60905 -14.23745 -14.11862 -13.98787 -13.85142 -13.41267 -12.79076 -12.59806 -12.32507 -12.13322 -11.59959 -11.49810 -11.36077 -11.22364 -11.09617 -10.90922 -10.57626 -10.26237 -9.61972 -9.41284 -9.19216 -8.99918 -8.42483 -7.64476 -7.27290 -6.55254 -4.22128 1.30445 1.59115 1.81240 2.05744 2.10183 3.16222 3.20107 3.36552 3.58871 4.00612 4.14161 4.24743 4.61299 4.85216 4.95851 5.03877 5.31669 5.34413 5.41417 5.56633 5.61507 5.80166 6.00492 6.16781 6.22864 6.38722 6.41401 6.69685 6.83254 6.89042 7.09254 7.30123 7.50646 7.63648 7.84114 7.96539 8.05379 8.79649 9.39116 10.51388 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.008746 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.182925 B = 3200.688854 C = 4613.336526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.199 6.199 10 C 0.156 3.844 11 C -0.218 4.218 12 C -0.068 4.068 13 C -0.201 4.201 14 C -0.071 4.071 15 C 0.045 3.955 16 N -0.665 5.665 17 C 0.205 3.795 18 C -0.120 4.120 19 C -0.120 4.120 20 C 0.046 3.954 21 N -0.445 5.445 22 C 0.093 3.907 23 Cl -0.049 7.049 24 H 0.281 0.719 25 H 0.137 0.863 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.405 0.595 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 -3.589 3.885 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.468 4.468 8 H 0.125 0.875 9 O -0.102 6.102 10 C 0.101 3.899 11 C -0.238 4.238 12 C -0.087 4.087 13 C -0.220 4.220 14 C -0.091 4.091 15 C -0.049 4.049 16 N -0.289 5.289 17 C 0.097 3.903 18 C -0.150 4.150 19 C -0.141 4.141 20 C -0.114 4.114 21 N -0.155 5.155 22 C -0.076 4.076 23 Cl -0.021 7.021 24 H 0.091 0.909 25 H 0.155 0.845 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.244 0.756 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.375 -2.585 3.744 12.251 hybrid contribution -0.310 0.129 -0.561 0.654 sum 11.065 -2.455 3.182 11.772 Atomic orbital electron populations 1.69644 1.05552 1.28722 1.46956 1.24415 0.94941 0.98735 0.95278 0.86282 0.80649 0.81569 0.79217 1.19871 1.20663 1.17993 1.20775 0.76805 0.96657 1.52522 0.87457 1.83642 1.22555 1.25162 1.78842 1.19440 0.90940 0.86128 0.93407 1.21248 1.01321 0.91480 1.09712 1.20912 0.94326 0.96848 0.96570 1.20565 0.93901 0.97134 1.10440 1.20866 0.99078 0.90937 0.98240 1.16625 0.87277 0.85708 1.15248 1.41594 1.51076 1.22093 1.14172 1.18388 0.93058 0.89953 0.88852 1.21189 0.99333 1.02242 0.92230 1.22004 0.98483 0.94854 0.98734 1.22232 0.95380 0.97801 0.95963 1.66690 1.21507 1.27900 0.99372 1.20835 0.99104 0.95329 0.92378 1.98341 1.66442 1.94590 1.42731 0.90857 0.84505 0.86839 0.86913 0.86462 0.75642 0.83863 0.84315 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.38 13.96 55.48 0.77 -23.61 16 2 C 0.07 1.93 5.49 -17.52 -0.10 1.83 16 3 Si 0.90 21.74 28.62 -169.99 -4.86 16.88 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.39 -10.42 9.94 30.87 0.31 -10.11 16 8 H 0.11 2.89 5.44 -52.48 -0.29 2.61 16 9 O -0.20 -4.85 8.05 0.00 0.00 -4.85 16 10 C 0.16 3.27 5.53 -38.92 -0.22 3.06 16 11 C -0.22 -4.24 9.16 -39.43 -0.36 -4.60 16 12 C -0.07 -1.09 10.04 -39.56 -0.40 -1.49 16 13 C -0.20 -2.96 10.04 -39.56 -0.40 -3.36 16 14 C -0.07 -1.11 9.97 -39.40 -0.39 -1.50 16 15 C 0.05 0.82 4.93 -83.54 -0.41 0.41 16 16 N -0.66 -11.70 5.13 -8.15 -0.04 -11.75 16 17 C 0.21 3.75 6.52 -83.55 -0.54 3.20 16 18 C -0.12 -2.14 9.06 -39.09 -0.35 -2.49 16 19 C -0.12 -1.83 10.10 -39.47 -0.40 -2.23 16 20 C 0.05 0.70 11.17 -17.53 -0.20 0.51 16 21 N -0.44 -7.82 10.33 -10.19 -0.11 -7.93 16 22 C 0.09 1.66 7.30 -17.22 -0.13 1.54 16 23 Cl -0.05 -0.77 27.77 -51.86 -1.44 -2.21 16 24 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.14 2.82 5.64 -52.48 -0.30 2.52 16 26 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.41 6.55 7.54 -40.82 -0.31 6.24 16 30 H 0.14 2.66 6.44 -52.49 -0.34 2.32 16 31 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -28.88 298.10 -7.24 -36.12 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -2.48 Total: 8.08 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.58 Total: -15.23 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.63 Total: -43.28 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: 0.00 Total: -4.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.88 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.44 Total: -2.21 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.88 -7.24 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212595291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.167 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds