Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86804 * 119.99880 * 2 1 4 4 H 1.48501 * 109.47472 * 270.00197 * 3 2 1 5 5 H 1.48506 * 109.46859 * 30.00561 * 3 2 1 6 6 H 1.48500 * 109.46736 * 149.99999 * 3 2 1 7 7 C 1.38615 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00150 * 359.97438 * 7 2 1 9 9 O 1.34810 * 120.00196 * 180.27386 * 7 2 1 10 10 C 1.35784 * 116.99832 * 174.67330 * 9 7 2 11 11 C 1.38722 * 120.10841 * 5.64603 * 10 9 7 12 12 C 1.38175 * 120.00950 * 179.97438 * 11 10 9 13 13 C 1.38356 * 120.21432 * 0.04354 * 12 11 10 14 14 C 1.38180 * 120.20672 * 359.97438 * 13 12 11 15 15 C 1.38790 * 119.98874 * 359.68207 * 14 13 12 16 16 N 1.39780 * 120.10404 * 180.29612 * 15 14 13 17 17 C 1.39769 * 119.99695 * 254.83832 * 16 15 14 18 18 C 1.39259 * 120.50030 * 355.21742 * 17 16 15 19 19 C 1.38547 * 118.37147 * 179.97438 * 18 17 16 20 20 C 1.38227 * 119.26928 * 0.02562 * 19 18 17 21 21 N 1.31901 * 120.94579 * 359.97438 * 20 19 18 22 22 C 1.31881 * 121.78426 * 359.72649 * 21 20 19 23 23 Cl 1.73604 * 119.68850 * 180.26682 * 22 21 20 24 24 H 0.96996 * 120.00171 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.99346 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.89263 * 180.02562 * 12 11 10 27 27 H 1.07995 * 119.89783 * 179.97438 * 13 12 11 28 28 H 1.07996 * 120.00655 * 179.97438 * 14 13 12 29 29 H 0.96997 * 120.00555 * 74.83765 * 16 15 14 30 30 H 1.08002 * 120.80912 * 359.95761 * 18 17 16 31 31 H 1.08002 * 120.36084 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.52245 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0466 -1.4001 5 1 1.4472 2.6527 0.7002 6 1 3.5474 1.4402 0.7001 7 6 2.0090 -1.2004 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3570 -1.2004 0.0050 10 6 3.9730 -2.4054 0.1165 11 6 3.2249 -3.5735 0.1004 12 6 3.8538 -4.7986 0.2134 13 6 5.2296 -4.8655 0.3438 14 6 5.9834 -3.7076 0.3612 15 6 5.3612 -2.4728 0.2411 16 7 6.1220 -1.3003 0.2523 17 6 6.1308 -0.4837 1.3866 18 6 5.3099 -0.7747 2.4733 19 6 5.3544 0.0641 3.5751 20 6 6.2044 1.1541 3.5609 21 7 6.9700 1.4035 2.5162 22 6 6.9636 0.6283 1.4493 23 17 7.9989 1.0038 0.1073 24 1 -0.4850 0.8400 0.0004 25 1 2.1506 -3.5253 -0.0005 26 1 3.2696 -5.7068 0.2003 27 1 5.7159 -5.8257 0.4322 28 1 7.0571 -3.7636 0.4635 29 1 6.6438 -1.0532 -0.5271 30 1 4.6546 -1.6330 2.4573 31 1 4.7312 -0.1312 4.4353 32 1 6.2420 1.8108 4.4174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212595291.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = 20.889547 kcal Electronic energy + Delta-G solvation = -20471.870314 eV Core-core repulsion = 17230.548735 eV Total energy + Delta-G solvation = -3241.321579 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62562 -40.68400 -38.48444 -37.64377 -36.73796 -34.47022 -32.99977 -31.80982 -30.84188 -29.17756 -27.22902 -24.90967 -24.19405 -23.19700 -22.43342 -19.86041 -19.29429 -19.00704 -18.26276 -17.60277 -16.73401 -16.58624 -16.13573 -15.68068 -15.50682 -15.43645 -15.37616 -14.83016 -14.39148 -14.16998 -14.13534 -13.34173 -13.14479 -12.83272 -12.73164 -12.67892 -12.61034 -12.35014 -12.15572 -11.91227 -11.39543 -10.96937 -10.69859 -10.45717 -9.79425 -9.15678 -8.62979 -8.54698 -6.23749 0.02326 0.26590 0.45400 0.63855 0.82813 1.24424 1.24983 1.42915 2.19263 2.25683 2.71981 2.73961 2.98161 3.10124 3.61007 3.80725 4.03970 4.10429 4.14536 4.25868 4.41649 4.51224 4.61354 4.81223 4.89336 5.01567 5.15559 5.35251 5.44994 5.53897 5.66310 5.72709 5.84550 6.01834 6.28626 6.59548 6.78809 6.81905 7.57777 8.56758 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.008746 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.182925 B = 3200.688854 C = 4613.336526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.389 4.389 8 H 0.088 0.912 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.234 4.234 12 C -0.066 4.066 13 C -0.171 4.171 14 C -0.069 4.069 15 C 0.052 3.948 16 N -0.668 5.668 17 C 0.189 3.811 18 C -0.140 4.140 19 C -0.116 4.116 20 C 0.050 3.950 21 N -0.462 5.462 22 C 0.077 3.923 23 Cl -0.038 7.038 24 H 0.283 0.717 25 H 0.114 0.886 26 H 0.145 0.855 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.410 0.590 30 H 0.129 0.871 31 H 0.171 0.829 32 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.396 -4.839 4.902 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.175 4.175 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.106 0.894 9 O -0.134 6.134 10 C 0.072 3.928 11 C -0.254 4.254 12 C -0.084 4.084 13 C -0.190 4.190 14 C -0.088 4.088 15 C -0.042 4.042 16 N -0.294 5.294 17 C 0.081 3.919 18 C -0.170 4.170 19 C -0.136 4.136 20 C -0.110 4.110 21 N -0.172 5.172 22 C -0.091 4.091 23 Cl -0.010 7.010 24 H 0.093 0.907 25 H 0.132 0.868 26 H 0.163 0.837 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.249 0.751 30 H 0.147 0.853 31 H 0.188 0.812 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 13.843 -3.868 4.757 15.140 hybrid contribution -0.822 0.208 -0.805 1.169 sum 13.021 -3.659 3.952 14.091 Atomic orbital electron populations 1.69709 1.06508 1.29277 1.50299 1.24963 0.95521 1.01042 0.95946 0.85469 0.78951 0.79114 0.78777 1.20060 1.19549 1.19330 1.20696 0.78209 0.95944 1.51686 0.89423 1.83607 1.20904 1.26871 1.82043 1.19961 0.92303 0.85679 0.94827 1.21302 1.00482 0.92859 1.10720 1.21271 0.95463 0.96429 0.95283 1.21124 0.93145 0.98723 1.05979 1.21281 1.00785 0.89907 0.96839 1.16910 0.86252 0.87072 1.13937 1.41593 1.51126 1.22206 1.14451 1.18513 0.93691 0.90485 0.89166 1.21290 0.99559 1.02746 0.93407 1.22401 0.98318 0.94039 0.98863 1.22932 0.93968 0.97858 0.96259 1.66786 1.22400 1.28144 0.99909 1.21000 0.99635 0.95459 0.93051 1.98332 1.65980 1.94502 1.42173 0.90697 0.86834 0.83702 0.82480 0.83356 0.75116 0.85309 0.81168 0.78672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 13.96 21.61 0.30 -53.18 16 2 C 0.02 1.39 5.49 84.82 0.47 1.85 16 3 Si 0.95 46.37 28.62 68.60 1.96 48.34 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -13.45 7.11 99.48 0.71 -12.75 16 7 C -0.39 -21.67 9.94 67.91 0.68 -21.00 16 8 H 0.09 5.07 5.44 -2.91 -0.02 5.05 16 9 O -0.23 -11.53 8.05 -22.91 -0.18 -11.71 16 10 C 0.12 5.26 5.53 22.70 0.13 5.38 16 11 C -0.23 -9.14 9.16 22.37 0.20 -8.94 16 12 C -0.07 -1.93 10.04 22.28 0.22 -1.71 16 13 C -0.17 -4.21 10.04 22.28 0.22 -3.99 16 14 C -0.07 -1.88 9.97 22.39 0.22 -1.66 16 15 C 0.05 1.82 4.93 38.32 0.19 2.01 16 16 N -0.67 -23.01 5.13 -179.70 -0.92 -23.93 16 17 C 0.19 6.76 6.52 38.32 0.25 7.01 16 18 C -0.14 -4.90 9.06 22.59 0.20 -4.69 16 19 C -0.12 -3.32 10.10 22.34 0.23 -3.10 16 20 C 0.05 1.39 11.17 84.68 0.95 2.34 16 21 N -0.46 -15.49 10.33 -186.15 -1.92 -17.41 16 22 C 0.08 2.68 7.30 84.89 0.62 3.30 16 23 Cl -0.04 -1.15 27.77 -2.72 -0.08 -1.23 16 24 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 25 H 0.11 4.94 5.64 -2.91 -0.02 4.92 16 26 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 29 H 0.41 12.94 7.54 -92.71 -0.70 12.25 16 30 H 0.13 4.82 6.44 -2.91 -0.02 4.80 16 31 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -65.50 298.10 4.22 -61.28 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.48 Total: 21.03 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 4.58 Total: -23.19 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -2.54 Total: -94.52 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.18 Total: -11.71 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.96 Total: 48.34 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -65.50 4.22 -61.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212595291.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.172 kcal (2) G-P(sol) polarization free energy of solvation -65.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds