Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86798 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47199 * 270.00078 * 3 2 1 5 5 H 1.48506 * 109.46788 * 30.00100 * 3 2 1 6 6 H 1.48493 * 109.46861 * 149.99845 * 3 2 1 7 7 C 1.38626 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00055 * 180.02562 * 7 2 1 9 9 O 1.34805 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.35780 * 116.99787 * 174.93100 * 9 7 2 11 11 C 1.38719 * 120.10644 * 5.65549 * 10 9 7 12 12 C 1.38177 * 120.00820 * 179.97438 * 11 10 9 13 13 C 1.38349 * 120.21045 * 0.02562 * 12 11 10 14 14 C 1.38179 * 120.20564 * 0.02562 * 13 12 11 15 15 C 1.38761 * 119.99305 * 359.67719 * 14 13 12 16 16 N 1.39830 * 120.10658 * 180.29760 * 15 14 13 17 17 C 1.39200 * 120.00192 * 254.81835 * 16 15 14 18 18 C 1.39556 * 120.85934 * 175.23715 * 17 16 15 19 19 C 1.37838 * 119.09791 * 180.02562 * 18 17 16 20 20 N 1.32036 * 120.85907 * 0.02562 * 19 18 17 21 21 C 1.32072 * 121.89983 * 359.97438 * 20 19 18 22 22 Cl 1.73595 * 119.59646 * 179.97438 * 21 20 19 23 23 C 1.38091 * 120.80829 * 359.70719 * 21 20 19 24 24 H 0.96996 * 119.99659 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99787 * 359.97438 * 11 10 9 26 26 H 1.08002 * 119.89030 * 179.97438 * 12 11 10 27 27 H 1.08005 * 119.89549 * 180.02562 * 13 12 11 28 28 H 1.08008 * 120.00258 * 180.02562 * 14 13 12 29 29 H 0.96995 * 119.99607 * 74.82501 * 16 15 14 30 30 H 1.08004 * 120.44904 * 0.02562 * 18 17 16 31 31 H 1.07999 * 119.56827 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.47368 * 180.30867 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2006 -0.0001 9 8 1.3349 -2.3680 -0.0005 10 6 2.0704 -3.5043 -0.1080 11 6 3.4560 -3.4404 -0.0934 12 6 4.2024 -4.5981 -0.2023 13 6 3.5723 -5.8235 -0.3267 14 6 2.1926 -5.8973 -0.3433 15 6 1.4347 -4.7406 -0.2283 16 7 0.0383 -4.8132 -0.2385 17 6 -0.6709 -4.4189 -1.3696 18 6 -2.0560 -4.5756 -1.4368 19 6 -2.7217 -4.1732 -2.5746 20 7 -2.0660 -3.6460 -3.5922 21 6 -0.7559 -3.4808 -3.5680 22 17 0.0457 -2.7818 -4.9400 23 6 -0.0165 -3.8522 -2.4624 24 1 -0.4849 0.8400 0.0004 25 1 3.9515 -2.4856 0.0032 26 1 5.2811 -4.5461 -0.1911 27 1 4.1607 -6.7253 -0.4111 28 1 1.7041 -6.8557 -0.4401 29 1 -0.4361 -5.1381 0.5426 30 1 -2.5988 -5.0065 -0.6084 31 1 -3.7935 -4.2914 -2.6349 32 1 1.0539 -3.7100 -2.4464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = 35.777559 kcal Electronic energy + Delta-G solvation = -20306.546433 eV Core-core repulsion = 17065.870447 eV Total energy + Delta-G solvation = -3240.675986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.03717 -39.02627 -36.74802 -36.17021 -35.27947 -32.38014 -30.93193 -30.47690 -29.23539 -27.89769 -25.45799 -23.29433 -22.69883 -21.71447 -20.96434 -18.09815 -17.69610 -17.56605 -16.31707 -15.34456 -15.16927 -14.85547 -14.66186 -14.37778 -13.98620 -13.84706 -13.72886 -13.39806 -13.17371 -12.82684 -11.80021 -11.63786 -11.45805 -11.37283 -11.06838 -11.05712 -10.96490 -10.82845 -10.58834 -10.37807 -9.55801 -9.16701 -8.93742 -8.50631 -8.35507 -7.58779 -7.26161 -6.53979 -4.13140 1.50630 1.80756 2.01366 2.19416 2.32170 3.07504 3.09551 3.13365 3.76363 3.88738 4.24074 4.36176 4.96170 4.96612 5.07502 5.42282 5.50883 5.55858 5.57930 5.65325 5.84528 5.97026 6.11551 6.20126 6.38525 6.50582 6.54172 6.86641 6.92561 6.96596 7.17631 7.22487 7.47456 7.80948 7.86663 8.08534 8.30999 8.90505 9.55404 10.61913 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.007930 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.999321 B = 3530.223300 C = 4844.212147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.045 3.955 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.397 4.397 8 H 0.092 0.908 9 O -0.156 6.156 10 C 0.149 3.851 11 C -0.231 4.231 12 C -0.066 4.066 13 C -0.211 4.211 14 C -0.069 4.069 15 C 0.038 3.962 16 N -0.659 5.659 17 C 0.280 3.720 18 C -0.249 4.249 19 C 0.147 3.853 20 N -0.529 5.529 21 C 0.213 3.787 22 Cl -0.047 7.047 23 C -0.196 4.196 24 H 0.271 0.729 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.404 0.596 30 H 0.133 0.867 31 H 0.157 0.843 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 -8.694 -1.693 8.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.161 4.161 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.473 4.473 8 H 0.110 0.890 9 O -0.058 6.058 10 C 0.092 3.908 11 C -0.251 4.251 12 C -0.085 4.085 13 C -0.231 4.231 14 C -0.089 4.089 15 C -0.055 4.055 16 N -0.282 5.282 17 C 0.167 3.833 18 C -0.275 4.275 19 C -0.009 4.009 20 N -0.244 5.244 21 C 0.051 3.949 22 Cl -0.018 7.018 23 C -0.222 4.222 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.133 0.867 29 H 0.241 0.759 30 H 0.151 0.849 31 H 0.174 0.826 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.008 -8.107 -2.535 8.494 hybrid contribution 0.940 0.681 1.046 1.563 sum 0.948 -7.425 -1.489 7.632 Atomic orbital electron populations 1.70047 1.05904 1.27855 1.44447 1.25271 0.95809 0.98792 0.96192 0.85757 0.78968 0.80124 0.78924 1.19668 1.20191 1.19146 1.21332 0.91833 0.80732 1.53389 0.89016 1.84022 1.33954 1.11142 1.76651 1.19677 0.90422 0.87876 0.92832 1.21132 0.93259 0.99329 1.11360 1.20852 0.98757 0.92260 0.96582 1.20481 0.93680 0.97223 1.11690 1.20823 0.93726 0.96207 0.98115 1.16600 0.82083 0.91034 1.15782 1.41382 1.03399 1.69559 1.13880 1.17874 0.90576 0.88401 0.86405 1.21519 0.92798 1.11326 1.01849 1.22119 0.99249 0.92078 0.87464 1.66931 1.07847 1.18812 1.30851 1.21091 0.89752 0.95619 0.88433 1.98362 1.77379 1.82567 1.43538 1.21179 1.01967 1.06086 0.92983 0.91889 0.85141 0.87156 0.87157 0.86714 0.75909 0.84932 0.82588 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.22 13.67 55.48 0.76 -23.47 16 2 C 0.05 1.21 5.49 -17.51 -0.10 1.11 16 3 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.40 -10.56 9.49 30.88 0.29 -10.27 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 9 O -0.16 -4.12 9.21 0.02 0.00 -4.12 16 10 C 0.15 3.32 5.54 -38.92 -0.22 3.10 16 11 C -0.23 -4.65 9.16 -39.43 -0.36 -5.02 16 12 C -0.07 -1.11 10.04 -39.56 -0.40 -1.51 16 13 C -0.21 -3.32 10.04 -39.56 -0.40 -3.72 16 14 C -0.07 -1.13 9.96 -39.41 -0.39 -1.53 16 15 C 0.04 0.74 4.93 -83.53 -0.41 0.33 16 16 N -0.66 -11.75 5.17 -8.13 -0.04 -11.79 16 17 C 0.28 5.29 6.54 -83.59 -0.55 4.74 16 18 C -0.25 -4.03 10.00 -39.24 -0.39 -4.42 16 19 C 0.15 2.39 11.17 -17.61 -0.20 2.19 16 20 N -0.53 -10.13 10.34 -10.46 -0.11 -10.24 16 21 C 0.21 4.29 7.27 -17.50 -0.13 4.17 16 22 Cl -0.05 -0.86 29.10 -51.86 -1.51 -2.37 16 23 C -0.20 -4.05 8.79 -39.20 -0.34 -4.39 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 27 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 29 H 0.40 6.13 8.86 -40.82 -0.36 5.77 16 30 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.14 3.07 6.44 -52.49 -0.34 2.73 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -30.18 301.53 -7.48 -37.66 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -2.52 Total: 9.86 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.59 Total: -15.21 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.61 Total: -45.50 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.00 Total: -4.12 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.51 Total: -2.37 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.18 -7.48 -37.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.437 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds