Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86796 * 119.99731 * 2 1 4 4 H 1.48503 * 109.46902 * 239.99517 * 3 2 1 5 5 H 1.48497 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47437 * 119.99972 * 3 2 1 7 7 C 1.38631 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 O 1.34803 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.35787 * 116.99582 * 174.71706 * 9 7 2 11 11 C 1.38721 * 120.10439 * 7.27150 * 10 9 7 12 12 C 1.38179 * 120.00640 * 180.27638 * 11 10 9 13 13 C 1.38348 * 120.20683 * 359.70585 * 12 11 10 14 14 C 1.38187 * 120.21001 * 0.02562 * 13 12 11 15 15 C 1.38763 * 119.98957 * 0.02562 * 14 13 12 16 16 N 1.39842 * 120.10585 * 179.97438 * 15 14 13 17 17 C 1.39051 * 119.99678 * 30.64493 * 16 15 14 18 18 C 1.39118 * 119.69877 * 171.26817 * 17 16 15 19 19 C 1.38335 * 119.12889 * 179.72726 * 18 17 16 20 20 C 1.38830 * 118.52085 * 359.97438 * 19 18 17 21 21 C 1.38217 * 119.31666 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 119.58748 * 180.02562 * 21 20 19 23 23 N 1.32047 * 120.82591 * 359.97438 * 21 20 19 24 24 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99851 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.89544 * 179.71776 * 12 11 10 27 27 H 1.08003 * 119.89336 * 180.02562 * 13 12 11 28 28 H 1.07996 * 120.00856 * 179.97438 * 14 13 12 29 29 H 0.96998 * 120.00506 * 210.64066 * 16 15 14 30 30 H 1.08002 * 120.43306 * 359.69807 * 18 17 16 31 31 H 1.07998 * 120.74294 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.33833 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0701 -3.5042 -0.1103 11 6 3.4553 -3.4439 -0.0654 12 6 4.2016 -4.6007 -0.1841 13 6 3.5717 -5.8223 -0.3419 14 6 2.1922 -5.8932 -0.3823 15 6 1.4345 -4.7366 -0.2649 16 7 0.0384 -4.8055 -0.3060 17 6 -0.6159 -5.9388 0.1642 18 6 -2.0012 -5.9321 0.2910 19 6 -2.6405 -7.0680 0.7545 20 6 -1.8704 -8.1773 1.0766 21 6 -0.4978 -8.1150 0.9264 22 17 0.4718 -9.4983 1.3263 23 7 0.0850 -7.0168 0.4815 24 1 -0.4850 0.8400 -0.0004 25 1 3.9506 -2.4921 0.0575 26 1 5.2800 -4.5511 -0.1535 27 1 4.1599 -6.7234 -0.4338 28 1 1.7039 -6.8485 -0.5060 29 1 -0.4736 -4.0627 -0.6624 30 1 -2.5701 -5.0515 0.0315 31 1 -3.7148 -7.0915 0.8627 32 1 -2.3390 -9.0793 1.4414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = 45.724016 kcal Electronic energy + Delta-G solvation = -19764.375627 eV Core-core repulsion = 16524.130952 eV Total energy + Delta-G solvation = -3240.244675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37174 -39.00879 -36.78975 -36.39341 -34.96405 -32.41634 -32.24646 -30.32532 -29.07419 -27.70206 -25.39553 -23.52803 -23.17136 -21.45044 -20.99157 -18.09205 -17.68996 -17.52561 -16.25392 -16.08259 -15.27348 -14.92483 -14.77779 -14.49393 -14.09733 -13.77584 -13.66524 -13.44282 -12.82041 -12.53469 -12.10690 -12.06662 -11.71413 -11.41062 -11.25769 -11.04920 -10.96358 -10.74526 -10.54916 -10.38809 -9.65657 -9.56205 -9.06453 -8.86651 -8.48886 -7.55527 -6.76834 -6.48991 -4.06302 1.13089 1.36040 1.86117 2.30736 2.40742 3.11333 3.12297 3.14544 3.49855 3.85647 3.93829 4.62023 4.68085 5.05542 5.06101 5.14508 5.19090 5.24050 5.44536 5.76700 5.86644 5.88322 6.09069 6.22936 6.36854 6.37868 6.66883 6.89260 6.92190 7.15532 7.23116 7.41679 7.51856 7.67035 7.89262 7.97749 8.32194 8.97532 9.64096 10.68850 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.004470 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.222592 B = 6261.982112 C = 7404.153501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.388 4.388 8 H 0.091 0.909 9 O -0.182 6.182 10 C 0.130 3.870 11 C -0.221 4.221 12 C -0.090 4.090 13 C -0.194 4.194 14 C -0.084 4.084 15 C 0.073 3.927 16 N -0.631 5.631 17 C 0.423 3.577 18 C -0.230 4.230 19 C -0.022 4.022 20 C -0.227 4.227 21 C 0.223 3.777 22 Cl -0.042 7.042 23 N -0.529 5.529 24 H 0.270 0.730 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.148 0.852 29 H 0.426 0.574 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 -12.865 0.407 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.108 0.892 9 O -0.086 6.086 10 C 0.076 3.924 11 C -0.241 4.241 12 C -0.109 4.109 13 C -0.214 4.214 14 C -0.105 4.105 15 C -0.022 4.022 16 N -0.254 5.254 17 C 0.187 3.813 18 C -0.256 4.256 19 C -0.048 4.048 20 C -0.251 4.251 21 C 0.058 3.942 22 Cl -0.014 7.014 23 N -0.249 5.249 24 H 0.079 0.921 25 H 0.147 0.853 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.165 0.835 29 H 0.265 0.735 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.217 -12.698 0.372 12.896 hybrid contribution -0.314 1.098 0.082 1.145 sum -2.531 -11.600 0.454 11.882 Atomic orbital electron populations 1.70010 1.05863 1.27728 1.46616 1.25236 0.95865 0.98692 0.96620 0.85787 0.78703 0.79816 0.79187 1.19536 1.20327 1.19549 1.21239 0.91805 0.80665 1.52760 0.89174 1.83898 1.34126 1.11243 1.79369 1.19156 0.90625 0.87038 0.95624 1.20952 0.92854 0.99177 1.11108 1.20782 0.98515 0.92454 0.99115 1.20561 0.94000 0.96907 1.09885 1.21245 0.93224 0.97559 0.98444 1.16954 0.81557 0.92176 1.11515 1.41879 1.04964 1.16043 1.62496 1.18153 0.87996 0.85993 0.89177 1.21466 0.93229 1.01264 1.09594 1.21214 1.00090 0.90984 0.92529 1.21404 0.92028 1.01377 1.10283 1.21282 0.88418 0.88846 0.95655 1.98389 1.73179 1.38307 1.91518 1.66702 1.39472 0.99212 1.19534 0.92053 0.85335 0.87525 0.87412 0.83451 0.73523 0.84167 0.84102 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.41 13.67 55.48 0.76 -23.65 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -10.55 9.49 30.88 0.29 -10.26 16 8 H 0.09 2.29 5.22 -52.49 -0.27 2.02 16 9 O -0.18 -4.94 9.25 0.01 0.00 -4.94 16 10 C 0.13 3.11 6.66 -38.92 -0.26 2.85 16 11 C -0.22 -4.83 9.16 -39.42 -0.36 -5.19 16 12 C -0.09 -1.70 10.04 -39.56 -0.40 -2.10 16 13 C -0.19 -3.59 10.04 -39.56 -0.40 -3.98 16 14 C -0.08 -1.65 8.73 -39.41 -0.34 -2.00 16 15 C 0.07 1.57 6.43 -83.53 -0.54 1.03 16 16 N -0.63 -12.20 5.37 -9.85 -0.05 -12.26 16 17 C 0.42 7.25 7.36 -154.95 -1.14 6.11 16 18 C -0.23 -3.19 9.94 -39.22 -0.39 -3.58 16 19 C -0.02 -0.25 10.16 -39.33 -0.40 -0.65 16 20 C -0.23 -2.70 9.87 -39.37 -0.39 -3.09 16 21 C 0.22 3.25 7.27 -17.47 -0.13 3.12 16 22 Cl -0.04 -0.55 29.10 -51.86 -1.51 -2.05 16 23 N -0.53 -9.08 6.43 -9.53 -0.06 -9.14 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.13 2.78 5.66 -52.49 -0.30 2.48 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 28 H 0.15 2.80 5.50 -52.49 -0.29 2.51 16 29 H 0.43 8.12 8.47 -40.82 -0.35 7.78 16 30 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 298.78 15.07 4.50 4.50 Total: -1.00 -29.87 298.78 -8.38 -38.26 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -2.45 Total: 10.91 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -4.54 Total: -16.77 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.64 Total: -45.05 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.00 Total: -4.94 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.51 Total: -2.05 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.87 -8.38 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.979 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds