Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86796 * 119.99731 * 2 1 4 4 H 1.48503 * 109.46902 * 239.99517 * 3 2 1 5 5 H 1.48497 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47437 * 119.99972 * 3 2 1 7 7 C 1.38631 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 O 1.34803 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.35787 * 116.99582 * 174.71706 * 9 7 2 11 11 C 1.38721 * 120.10439 * 7.27150 * 10 9 7 12 12 C 1.38179 * 120.00640 * 180.27638 * 11 10 9 13 13 C 1.38348 * 120.20683 * 359.70585 * 12 11 10 14 14 C 1.38187 * 120.21001 * 0.02562 * 13 12 11 15 15 C 1.38763 * 119.98957 * 0.02562 * 14 13 12 16 16 N 1.39842 * 120.10585 * 179.97438 * 15 14 13 17 17 C 1.39051 * 119.99678 * 30.64493 * 16 15 14 18 18 C 1.39118 * 119.69877 * 171.26817 * 17 16 15 19 19 C 1.38335 * 119.12889 * 179.72726 * 18 17 16 20 20 C 1.38830 * 118.52085 * 359.97438 * 19 18 17 21 21 C 1.38217 * 119.31666 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 119.58748 * 180.02562 * 21 20 19 23 23 N 1.32047 * 120.82591 * 359.97438 * 21 20 19 24 24 H 0.96999 * 120.00006 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99851 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.89544 * 179.71776 * 12 11 10 27 27 H 1.08003 * 119.89336 * 180.02562 * 13 12 11 28 28 H 1.07996 * 120.00856 * 179.97438 * 14 13 12 29 29 H 0.96998 * 120.00506 * 210.64066 * 16 15 14 30 30 H 1.08002 * 120.43306 * 359.69807 * 18 17 16 31 31 H 1.07998 * 120.74294 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.33833 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0701 -3.5042 -0.1103 11 6 3.4553 -3.4439 -0.0654 12 6 4.2016 -4.6007 -0.1841 13 6 3.5717 -5.8223 -0.3419 14 6 2.1922 -5.8932 -0.3823 15 6 1.4345 -4.7366 -0.2649 16 7 0.0384 -4.8055 -0.3060 17 6 -0.6159 -5.9388 0.1642 18 6 -2.0012 -5.9321 0.2910 19 6 -2.6405 -7.0680 0.7545 20 6 -1.8704 -8.1773 1.0766 21 6 -0.4978 -8.1150 0.9264 22 17 0.4718 -9.4983 1.3263 23 7 0.0850 -7.0168 0.4815 24 1 -0.4850 0.8400 -0.0004 25 1 3.9506 -2.4921 0.0575 26 1 5.2800 -4.5511 -0.1535 27 1 4.1599 -6.7234 -0.4338 28 1 1.7039 -6.8485 -0.5060 29 1 -0.4736 -4.0627 -0.6624 30 1 -2.5701 -5.0515 0.0315 31 1 -3.7148 -7.0915 0.8627 32 1 -2.3390 -9.0793 1.4414 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596534.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = 29.121462 kcal Electronic energy + Delta-G solvation = -19765.095568 eV Core-core repulsion = 16524.130952 eV Total energy + Delta-G solvation = -3240.964616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.63625 -40.58324 -38.29630 -37.63966 -36.32757 -34.25796 -33.45979 -31.63597 -30.68973 -29.14336 -27.31701 -24.67670 -24.45605 -23.03486 -22.48380 -19.85827 -19.23673 -18.85741 -17.78406 -17.18936 -16.62057 -16.35131 -16.29925 -15.92707 -15.54403 -15.43210 -15.22015 -14.84662 -14.37636 -13.93126 -13.57438 -13.41810 -13.07261 -12.90406 -12.63518 -12.52275 -12.31184 -12.25787 -12.15675 -11.69219 -11.37145 -10.81320 -10.74507 -10.32594 -9.82372 -9.17826 -8.45877 -8.28469 -6.09800 0.01025 0.24646 0.72113 0.79704 0.83119 1.36118 1.45817 1.50663 2.13304 2.21177 2.71001 2.89179 3.22247 3.44759 3.60568 3.95019 4.09234 4.22921 4.27271 4.32530 4.42666 4.57241 4.78389 4.86069 5.03487 5.11763 5.21323 5.28897 5.45001 5.56088 5.61810 5.81964 5.98096 6.08269 6.26372 6.41884 6.99324 7.01637 7.77908 8.76810 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.004470 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.222592 B = 6261.982112 C = 7404.153501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.017 4.017 3 Si 1.013 2.987 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.411 4.411 8 H 0.097 0.903 9 O -0.222 6.222 10 C 0.087 3.913 11 C -0.230 4.230 12 C -0.092 4.092 13 C -0.176 4.176 14 C -0.094 4.094 15 C 0.076 3.924 16 N -0.648 5.648 17 C 0.394 3.606 18 C -0.233 4.233 19 C -0.010 4.010 20 C -0.207 4.207 21 C 0.199 3.801 22 Cl -0.033 7.033 23 N -0.554 5.554 24 H 0.271 0.729 25 H 0.123 0.877 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.157 0.843 29 H 0.420 0.580 30 H 0.150 0.850 31 H 0.187 0.813 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -14.855 0.780 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.215 4.215 3 Si 0.833 3.167 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.115 0.885 9 O -0.129 6.129 10 C 0.035 3.965 11 C -0.250 4.250 12 C -0.111 4.111 13 C -0.195 4.195 14 C -0.115 4.115 15 C -0.020 4.020 16 N -0.272 5.272 17 C 0.160 3.840 18 C -0.258 4.258 19 C -0.035 4.035 20 C -0.230 4.230 21 C 0.034 3.966 22 Cl -0.004 7.004 23 N -0.274 5.274 24 H 0.080 0.920 25 H 0.141 0.859 26 H 0.161 0.839 27 H 0.162 0.838 28 H 0.174 0.826 29 H 0.257 0.743 30 H 0.168 0.832 31 H 0.204 0.796 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.082 -14.783 0.758 14.948 hybrid contribution -0.395 1.308 -0.004 1.366 sum -2.477 -13.475 0.754 13.722 Atomic orbital electron populations 1.70147 1.07633 1.28644 1.48957 1.26411 0.96849 1.02218 0.96049 0.84718 0.77455 0.74821 0.79702 1.18415 1.19669 1.18577 1.21698 0.92439 0.81470 1.53108 0.88544 1.83870 1.35151 1.11928 1.81929 1.19666 0.91795 0.87162 0.97911 1.21136 0.92461 1.00262 1.11124 1.21125 1.00232 0.91406 0.98301 1.21058 0.93754 0.98110 1.06536 1.21500 0.93935 0.97289 0.98746 1.17261 0.83007 0.91867 1.09849 1.41865 1.04180 1.17027 1.64114 1.18421 0.89200 0.85553 0.90864 1.21743 0.92009 1.02817 1.09200 1.21751 1.02180 0.89350 0.90216 1.21891 0.90938 1.02613 1.07562 1.21680 0.89797 0.88588 0.96486 1.98388 1.73231 1.37367 1.91420 1.66504 1.40764 0.99955 1.20208 0.91974 0.85940 0.83860 0.83771 0.82591 0.74257 0.83197 0.79606 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.08 13.67 21.61 0.30 -53.79 16 2 C -0.02 -0.97 5.49 84.82 0.47 -0.50 16 3 Si 1.01 42.33 29.55 68.60 2.03 44.36 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.41 -23.45 9.49 67.91 0.64 -22.81 16 8 H 0.10 5.12 5.22 -2.91 -0.02 5.11 16 9 O -0.22 -12.84 9.25 -22.87 -0.21 -13.05 16 10 C 0.09 4.33 6.66 22.70 0.15 4.49 16 11 C -0.23 -10.26 9.16 22.37 0.20 -10.06 16 12 C -0.09 -3.34 10.04 22.28 0.22 -3.11 16 13 C -0.18 -6.12 10.04 22.28 0.22 -5.90 16 14 C -0.09 -3.66 8.73 22.38 0.20 -3.47 16 15 C 0.08 3.38 6.43 38.30 0.25 3.63 16 16 N -0.65 -26.29 5.37 -185.07 -0.99 -27.29 16 17 C 0.39 13.59 7.36 133.03 0.98 14.57 16 18 C -0.23 -6.20 9.94 22.50 0.22 -5.97 16 19 C -0.01 -0.18 10.16 22.43 0.23 0.04 16 20 C -0.21 -4.19 9.87 22.41 0.22 -3.97 16 21 C 0.20 5.39 7.27 84.66 0.62 6.01 16 22 Cl -0.03 -0.77 29.10 -2.72 -0.08 -0.85 16 23 N -0.55 -18.67 6.43 -184.06 -1.18 -19.85 16 24 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.12 5.48 5.66 -2.91 -0.02 5.46 16 26 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 27 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 28 H 0.16 5.83 5.50 -2.91 -0.02 5.81 16 29 H 0.42 17.35 8.47 -92.71 -0.79 16.57 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 32 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -69.10 298.78 4.88 -64.22 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.40 Total: 33.30 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 4.62 Total: -27.05 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -1.88 Total: -100.92 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.21 Total: -13.05 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -69.10 4.88 -64.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596534.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.346 kcal (2) G-P(sol) polarization free energy of solvation -69.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds