Wall clock time and date at job start Tue Mar 31 2020 06:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86798 * 119.99850 * 2 1 4 4 H 1.48502 * 109.47149 * 269.99605 * 3 2 1 5 5 H 1.48488 * 109.47363 * 29.99842 * 3 2 1 6 6 H 1.48502 * 109.47063 * 149.99991 * 3 2 1 7 7 C 1.38615 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99712 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.35783 * 117.00148 * 174.89070 * 9 7 2 11 11 C 1.38913 * 119.99489 * 5.60779 * 10 9 7 12 12 C 1.37985 * 120.00784 * 180.02562 * 11 10 9 13 13 C 1.38976 * 119.99457 * 0.02562 * 12 11 10 14 14 N 1.39780 * 120.00708 * 179.97438 * 13 12 11 15 15 C 1.39779 * 120.00259 * 138.76545 * 14 13 12 16 16 C 1.39255 * 120.49670 * 352.46916 * 15 14 13 17 17 C 1.38547 * 118.37286 * 179.97438 * 16 15 14 18 18 C 1.38231 * 119.26711 * 0.02562 * 17 16 15 19 19 N 1.31904 * 120.94626 * 359.97155 * 18 17 16 20 20 C 1.31880 * 121.77998 * 0.02562 * 19 18 17 21 21 Cl 1.73605 * 119.68413 * 179.97438 * 20 19 18 22 22 C 1.38976 * 119.98724 * 0.25058 * 13 12 11 23 23 C 1.37998 * 119.98750 * 359.49321 * 22 13 12 24 24 H 0.96994 * 120.00138 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99470 * 0.02562 * 11 10 9 26 26 H 1.08000 * 120.00239 * 179.97438 * 12 11 10 27 27 H 0.96998 * 119.99659 * 318.75264 * 14 13 12 28 28 H 1.08006 * 120.81064 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.36491 * 180.02562 * 17 16 15 30 30 H 1.07996 * 119.52711 * 180.25414 * 18 17 16 31 31 H 1.07995 * 120.01208 * 179.74701 * 22 13 12 32 32 H 1.07998 * 119.99440 * 180.27115 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6526 0.6999 6 1 3.5474 1.4402 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5044 -0.1067 11 6 3.4578 -3.4376 -0.0926 12 6 4.2054 -4.5922 -0.2020 13 6 3.5702 -5.8219 -0.3269 14 7 4.3273 -6.9917 -0.4384 15 6 3.9363 -8.1453 0.2474 16 6 2.8891 -8.1017 1.1642 17 6 2.5379 -9.2712 1.8186 18 6 3.2325 -10.4343 1.5435 19 7 4.2202 -10.4438 0.6694 20 6 4.5872 -9.3537 0.0242 21 17 5.8955 -9.4281 -1.1145 22 6 2.1821 -5.8879 -0.3468 23 6 1.4350 -4.7334 -0.2320 24 1 -0.4850 0.8400 -0.0004 25 1 3.9514 -2.4819 0.0041 26 1 5.2841 -4.5401 -0.1915 27 1 5.1238 -7.0029 -0.9917 28 1 2.3636 -7.1787 1.3603 29 1 1.7303 -9.2742 2.5357 30 1 2.9595 -11.3492 2.0482 31 1 1.6882 -6.8430 -0.4479 32 1 0.3563 -4.7850 -0.2430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:10 Heat of formation + Delta-G solvation = 37.071837 kcal Electronic energy + Delta-G solvation = -19291.936514 eV Core-core repulsion = 16051.316652 eV Total energy + Delta-G solvation = -3240.619862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53628 -39.17491 -37.41015 -36.66745 -34.91419 -32.36535 -32.08742 -30.56918 -29.92356 -27.54274 -25.40421 -23.81371 -23.10064 -22.03016 -21.00115 -18.33314 -17.73784 -17.52619 -17.23654 -16.38639 -15.54753 -14.83183 -14.71993 -14.49586 -14.38650 -13.83356 -13.80909 -13.26980 -12.97207 -12.77460 -12.44537 -12.03701 -11.80366 -11.72139 -11.61268 -11.37291 -11.23465 -10.85581 -10.72718 -10.52726 -9.72755 -9.58008 -9.44555 -8.96525 -8.42711 -8.13310 -6.87603 -6.55767 -4.13774 0.94584 1.19385 1.81579 1.96001 2.15681 3.06207 3.07496 3.12167 3.29687 3.66350 3.87682 4.35356 4.53425 4.69690 4.96038 5.01057 5.01986 5.12874 5.29947 5.41704 5.51570 5.81142 5.98513 5.99106 6.09294 6.20953 6.41574 6.60272 6.70330 6.84562 7.07854 7.15774 7.33385 7.52850 7.72905 7.78110 7.88017 8.89382 9.56742 10.61651 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.003278 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.279903 B = 8539.049126 C = 9130.186162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.145 3.855 11 C -0.213 4.213 12 C -0.087 4.087 13 C 0.043 3.957 14 N -0.660 5.660 15 C 0.190 3.810 16 C -0.142 4.142 17 C -0.119 4.119 18 C 0.048 3.952 19 N -0.442 5.442 20 C 0.093 3.907 21 Cl -0.044 7.044 22 C -0.097 4.097 23 C -0.171 4.171 24 H 0.272 0.728 25 H 0.133 0.867 26 H 0.112 0.888 27 H 0.407 0.593 28 H 0.156 0.844 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.118 0.882 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 -14.167 1.393 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.090 3.910 11 C -0.233 4.233 12 C -0.107 4.107 13 C -0.051 4.051 14 N -0.281 5.281 15 C 0.081 3.919 16 C -0.172 4.172 17 C -0.139 4.139 18 C -0.112 4.112 19 N -0.152 5.152 20 C -0.076 4.076 21 Cl -0.016 7.016 22 C -0.117 4.117 23 C -0.191 4.191 24 H 0.081 0.919 25 H 0.150 0.850 26 H 0.130 0.870 27 H 0.244 0.756 28 H 0.173 0.827 29 H 0.159 0.841 30 H 0.177 0.823 31 H 0.136 0.864 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.865 -14.570 1.159 16.147 hybrid contribution 0.564 1.541 -0.186 1.651 sum 7.428 -13.029 0.973 15.029 Atomic orbital electron populations 1.70042 1.05984 1.27894 1.45404 1.25306 0.95867 0.98917 0.96356 0.85699 0.78944 0.79940 0.78806 1.19794 1.20173 1.19130 1.21333 0.91838 0.80750 1.53017 0.88956 1.83983 1.34294 1.11430 1.77856 1.19389 0.90206 0.88176 0.93192 1.21034 0.93675 0.98566 1.10038 1.20582 0.98734 0.91136 1.00239 1.17180 0.90333 0.84941 1.12599 1.42003 1.29486 1.07134 1.49452 1.18409 0.94538 0.86514 0.92431 1.21597 0.98291 1.00619 0.96707 1.22065 0.99975 0.92756 0.99131 1.22319 0.93183 0.98580 0.97140 1.66754 1.14123 1.28194 1.06095 1.20907 0.96998 0.89384 1.00324 1.98364 1.46852 1.98247 1.58133 1.20598 0.91938 0.97652 1.01556 1.20080 0.99710 0.89728 1.09558 0.91858 0.84955 0.86989 0.75553 0.82683 0.84100 0.82340 0.86390 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 7 C -0.39 -10.44 9.48 30.87 0.29 -10.15 16 8 H 0.09 2.25 5.20 -52.49 -0.27 1.97 16 9 O -0.17 -4.65 9.75 0.00 0.00 -4.65 16 10 C 0.14 3.23 6.65 -39.08 -0.26 2.98 16 11 C -0.21 -4.25 9.16 -39.42 -0.36 -4.61 16 12 C -0.09 -1.46 9.96 -39.40 -0.39 -1.85 16 13 C 0.04 0.69 5.91 -83.69 -0.49 0.19 16 14 N -0.66 -9.14 5.43 -8.24 -0.04 -9.18 16 15 C 0.19 2.58 6.44 -83.55 -0.54 2.05 16 16 C -0.14 -1.80 8.13 -39.09 -0.32 -2.12 16 17 C -0.12 -1.23 10.10 -39.47 -0.40 -1.63 16 18 C 0.05 0.52 11.17 -17.52 -0.20 0.32 16 19 N -0.44 -5.94 10.33 -10.19 -0.11 -6.04 16 20 C 0.09 1.27 7.30 -17.22 -0.13 1.15 16 21 Cl -0.04 -0.54 27.78 -51.86 -1.44 -1.98 16 22 C -0.10 -1.60 7.39 -39.40 -0.29 -1.89 16 23 C -0.17 -3.29 9.98 -39.42 -0.39 -3.68 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.13 2.64 5.63 -52.49 -0.30 2.35 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.41 5.10 7.56 -40.82 -0.31 4.79 16 28 H 0.16 2.04 5.48 -52.48 -0.29 1.75 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.72 6.63 -52.49 -0.35 1.37 16 32 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 296.05 15.07 4.46 4.46 Total: -1.00 -29.24 296.05 -7.30 -36.54 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -2.34 Total: 7.97 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.57 Total: -18.27 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.61 Total: -38.73 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: 0.00 Total: -4.65 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.44 Total: -1.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.24 -7.30 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.613 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds