Wall clock time and date at job start Tue Mar 31 2020 06:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86798 * 119.99850 * 2 1 4 4 H 1.48502 * 109.47149 * 269.99605 * 3 2 1 5 5 H 1.48488 * 109.47363 * 29.99842 * 3 2 1 6 6 H 1.48502 * 109.47063 * 149.99991 * 3 2 1 7 7 C 1.38615 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99712 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.35783 * 117.00148 * 174.89070 * 9 7 2 11 11 C 1.38913 * 119.99489 * 5.60779 * 10 9 7 12 12 C 1.37985 * 120.00784 * 180.02562 * 11 10 9 13 13 C 1.38976 * 119.99457 * 0.02562 * 12 11 10 14 14 N 1.39780 * 120.00708 * 179.97438 * 13 12 11 15 15 C 1.39779 * 120.00259 * 138.76545 * 14 13 12 16 16 C 1.39255 * 120.49670 * 352.46916 * 15 14 13 17 17 C 1.38547 * 118.37286 * 179.97438 * 16 15 14 18 18 C 1.38231 * 119.26711 * 0.02562 * 17 16 15 19 19 N 1.31904 * 120.94626 * 359.97155 * 18 17 16 20 20 C 1.31880 * 121.77998 * 0.02562 * 19 18 17 21 21 Cl 1.73605 * 119.68413 * 179.97438 * 20 19 18 22 22 C 1.38976 * 119.98724 * 0.25058 * 13 12 11 23 23 C 1.37998 * 119.98750 * 359.49321 * 22 13 12 24 24 H 0.96994 * 120.00138 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99470 * 0.02562 * 11 10 9 26 26 H 1.08000 * 120.00239 * 179.97438 * 12 11 10 27 27 H 0.96998 * 119.99659 * 318.75264 * 14 13 12 28 28 H 1.08006 * 120.81064 * 359.97438 * 16 15 14 29 29 H 1.07997 * 120.36491 * 180.02562 * 17 16 15 30 30 H 1.07996 * 119.52711 * 180.25414 * 18 17 16 31 31 H 1.07995 * 120.01208 * 179.74701 * 22 13 12 32 32 H 1.07998 * 119.99440 * 180.27115 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6526 0.6999 6 1 3.5474 1.4402 0.7000 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0703 -3.5044 -0.1067 11 6 3.4578 -3.4376 -0.0926 12 6 4.2054 -4.5922 -0.2020 13 6 3.5702 -5.8219 -0.3269 14 7 4.3273 -6.9917 -0.4384 15 6 3.9363 -8.1453 0.2474 16 6 2.8891 -8.1017 1.1642 17 6 2.5379 -9.2712 1.8186 18 6 3.2325 -10.4343 1.5435 19 7 4.2202 -10.4438 0.6694 20 6 4.5872 -9.3537 0.0242 21 17 5.8955 -9.4281 -1.1145 22 6 2.1821 -5.8879 -0.3468 23 6 1.4350 -4.7334 -0.2320 24 1 -0.4850 0.8400 -0.0004 25 1 3.9514 -2.4819 0.0041 26 1 5.2841 -4.5401 -0.1915 27 1 5.1238 -7.0029 -0.9917 28 1 2.3636 -7.1787 1.3603 29 1 1.7303 -9.2742 2.5357 30 1 2.9595 -11.3492 2.0482 31 1 1.6882 -6.8430 -0.4479 32 1 0.3563 -4.7850 -0.2430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:10 Heat of formation + Delta-G solvation = 19.290727 kcal Electronic energy + Delta-G solvation = -19292.707561 eV Core-core repulsion = 16051.316652 eV Total energy + Delta-G solvation = -3241.390909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62331 -40.65612 -38.88357 -37.63087 -36.25627 -34.21139 -33.08896 -31.96176 -31.16204 -28.91292 -27.21230 -24.89438 -24.23480 -23.42300 -22.41550 -19.97559 -19.02286 -18.88232 -18.36920 -17.68789 -16.69351 -16.33580 -16.18219 -15.74214 -15.50810 -15.35605 -15.23296 -14.60266 -14.46530 -14.15637 -13.63414 -13.36305 -13.20615 -13.08477 -12.80347 -12.73430 -12.46698 -12.30211 -12.13266 -12.04951 -11.22966 -10.81340 -10.67453 -10.46078 -9.88519 -9.45529 -8.46051 -8.24478 -6.12272 -0.01679 0.16779 0.47075 0.74187 0.85174 1.37532 1.45687 1.54023 2.13914 2.19214 2.68375 2.81815 3.13132 3.50510 3.60251 3.77167 4.00596 4.04985 4.06719 4.13071 4.45249 4.45834 4.60763 4.79048 4.88779 5.05788 5.13572 5.18009 5.33477 5.39570 5.54441 5.64446 5.83034 6.02321 6.27681 6.54722 6.80652 6.99172 7.78515 8.76898 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.033394 B = 0.003278 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.279903 B = 8539.049126 C = 9130.186162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.088 4.088 13 C 0.078 3.922 14 N -0.661 5.661 15 C 0.172 3.828 16 C -0.151 4.151 17 C -0.108 4.108 18 C 0.056 3.944 19 N -0.464 5.464 20 C 0.084 3.916 21 Cl -0.040 7.040 22 C -0.089 4.089 23 C -0.172 4.172 24 H 0.272 0.728 25 H 0.127 0.873 26 H 0.143 0.857 27 H 0.415 0.585 28 H 0.150 0.850 29 H 0.176 0.824 30 H 0.194 0.806 31 H 0.143 0.857 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -16.529 1.954 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.055 3.945 11 C -0.235 4.235 12 C -0.108 4.108 13 C -0.017 4.017 14 N -0.284 5.284 15 C 0.066 3.934 16 C -0.181 4.181 17 C -0.128 4.128 18 C -0.104 4.104 19 N -0.175 5.175 20 C -0.084 4.084 21 Cl -0.012 7.012 22 C -0.109 4.109 23 C -0.192 4.192 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.161 0.839 27 H 0.253 0.747 28 H 0.167 0.833 29 H 0.193 0.807 30 H 0.211 0.789 31 H 0.161 0.839 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.571 -17.027 1.717 19.140 hybrid contribution 0.169 1.720 -0.310 1.756 sum 8.740 -15.307 1.407 17.682 Atomic orbital electron populations 1.70185 1.07965 1.28773 1.48803 1.26527 0.96797 1.02651 0.95936 0.84620 0.77905 0.74794 0.79158 1.18993 1.19811 1.17552 1.21811 0.92571 0.81392 1.53008 0.87873 1.83951 1.35766 1.12468 1.81254 1.19893 0.91438 0.88044 0.95143 1.21102 0.92950 0.99579 1.09822 1.20828 1.00168 0.90309 0.99481 1.17273 0.90371 0.85614 1.08419 1.41879 1.29705 1.06507 1.50338 1.18489 0.95390 0.86261 0.93303 1.21738 0.98077 1.01388 0.96939 1.22442 1.00148 0.91542 0.98630 1.23008 0.91640 1.00057 0.95648 1.66845 1.15330 1.28209 1.07066 1.21017 0.97296 0.89465 1.00601 1.98363 1.46614 1.98237 1.57963 1.20783 0.92173 0.97558 1.00418 1.20262 1.00158 0.89658 1.09134 0.91874 0.85547 0.83935 0.74656 0.83295 0.80694 0.78935 0.83923 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.83 13.67 21.61 0.30 -54.54 16 2 C -0.02 -1.17 5.49 84.82 0.47 -0.71 16 3 Si 1.02 41.41 29.55 68.60 2.03 43.43 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.41 -22.91 9.48 67.91 0.64 -22.26 16 8 H 0.10 5.21 5.20 -2.91 -0.02 5.19 16 9 O -0.23 -13.01 9.75 -22.91 -0.22 -13.23 16 10 C 0.11 4.87 6.65 22.59 0.15 5.02 16 11 C -0.21 -8.59 9.16 22.37 0.20 -8.39 16 12 C -0.09 -2.78 9.96 22.39 0.22 -2.56 16 13 C 0.08 2.31 5.91 38.23 0.23 2.53 16 14 N -0.66 -16.48 5.43 -179.99 -0.98 -17.46 16 15 C 0.17 4.20 6.44 38.32 0.25 4.45 16 16 C -0.15 -3.34 8.13 22.59 0.18 -3.16 16 17 C -0.11 -1.77 10.10 22.34 0.23 -1.54 16 18 C 0.06 0.98 11.17 84.68 0.95 1.93 16 19 N -0.46 -11.00 10.33 -186.16 -1.92 -12.93 16 20 C 0.08 2.07 7.30 84.88 0.62 2.69 16 21 Cl -0.04 -0.89 27.78 -2.72 -0.08 -0.97 16 22 C -0.09 -2.77 7.39 22.39 0.17 -2.60 16 23 C -0.17 -6.68 9.98 22.38 0.22 -6.45 16 24 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 25 H 0.13 5.14 5.63 -2.91 -0.02 5.12 16 26 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 27 H 0.41 9.25 7.56 -92.71 -0.70 8.55 16 28 H 0.15 3.49 5.48 -2.91 -0.02 3.47 16 29 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.14 3.75 6.63 -2.91 -0.02 3.73 16 32 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -67.29 296.05 4.14 -63.15 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.49 Total: 23.59 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 4.52 Total: -31.05 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.61 Total: -84.92 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.22 Total: -13.23 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -67.29 4.14 -63.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.442 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds