Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48494 * 109.47179 * 269.99570 * 3 2 1 5 5 H 1.48495 * 109.47477 * 29.99913 * 3 2 1 6 6 H 1.48501 * 109.46724 * 149.99826 * 3 2 1 7 7 C 1.38612 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00219 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.35786 * 116.99770 * 174.89246 * 9 7 2 11 11 C 1.38912 * 119.99515 * 5.52297 * 10 9 7 12 12 C 1.37997 * 120.00253 * 180.02562 * 11 10 9 13 13 C 1.38955 * 119.99662 * 359.97438 * 12 11 10 14 14 N 1.39849 * 120.00605 * 179.97438 * 13 12 11 15 15 C 1.39060 * 119.99763 * 147.37615 * 14 13 12 16 16 C 1.39118 * 119.69283 * 174.55373 * 15 14 13 17 17 C 1.38343 * 119.12297 * 180.02562 * 16 15 14 18 18 C 1.38831 * 118.51922 * 359.97438 * 17 16 15 19 19 C 1.38208 * 119.31986 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.58506 * 179.97438 * 19 18 17 21 21 N 1.32041 * 120.82861 * 0.02562 * 19 18 17 22 22 C 1.38962 * 119.99065 * 0.26805 * 13 12 11 23 23 C 1.38001 * 119.98972 * 359.49525 * 22 13 12 24 24 H 0.97006 * 119.99835 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99597 * 0.02562 * 11 10 9 26 26 H 1.08008 * 120.00155 * 179.97438 * 12 11 10 27 27 H 0.96996 * 119.99870 * 327.38025 * 14 13 12 28 28 H 1.07998 * 120.43930 * 0.02562 * 16 15 14 29 29 H 1.08001 * 120.74045 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.33691 * 180.02562 * 18 17 16 31 31 H 1.07996 * 120.00425 * 179.70903 * 22 13 12 32 32 H 1.07998 * 119.99344 * 180.22848 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5474 1.4401 0.7001 7 6 2.0089 -1.2004 0.0005 8 1 3.0888 -1.2005 0.0010 9 8 1.3347 -2.3680 0.0016 10 6 2.0701 -3.5044 -0.1057 11 6 3.4576 -3.4375 -0.0944 12 6 4.2050 -4.5923 -0.2039 13 6 3.5697 -5.8222 -0.3249 14 7 4.3271 -6.9926 -0.4364 15 6 3.8491 -8.1836 0.0991 16 6 4.5515 -9.3655 -0.1133 17 6 4.0651 -10.5437 0.4244 18 6 2.8883 -10.5006 1.1599 19 6 2.2416 -9.2913 1.3317 20 17 0.7693 -9.2295 2.2495 21 7 2.7290 -8.1826 0.8058 22 6 2.1818 -5.8884 -0.3412 23 6 1.4347 -4.7338 -0.2268 24 1 -0.4850 0.8401 -0.0004 25 1 3.9512 -2.4816 0.0001 26 1 5.2838 -4.5402 -0.1955 27 1 5.1857 -6.9735 -0.8872 28 1 5.4644 -9.3634 -0.6903 29 1 4.5891 -11.4763 0.2754 30 1 2.4825 -11.4028 1.5932 31 1 1.6878 -6.8437 -0.4400 32 1 0.3560 -4.7856 -0.2357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = 44.529379 kcal Electronic energy + Delta-G solvation = -19273.061702 eV Core-core repulsion = 16032.765223 eV Total energy + Delta-G solvation = -3240.296479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51164 -38.95596 -37.21676 -36.53167 -34.56927 -32.54199 -32.19770 -30.37023 -29.90336 -27.37499 -25.28606 -23.73612 -23.12661 -21.87761 -20.90153 -18.30114 -17.63658 -17.49346 -16.61983 -16.22604 -15.57674 -14.92889 -14.84339 -14.49297 -14.24434 -13.71292 -13.59166 -13.21895 -12.76236 -12.61743 -12.35341 -12.25733 -11.68987 -11.50010 -11.45837 -11.26558 -11.06395 -10.67962 -10.44676 -10.39364 -9.75619 -9.49022 -9.28457 -8.85169 -8.21550 -8.15895 -6.71868 -6.41809 -3.99530 0.94424 1.19168 1.78186 2.22308 2.39907 3.13974 3.14909 3.19676 3.24803 3.68275 3.98998 4.47963 4.61584 4.84405 4.96280 5.02842 5.12677 5.21322 5.36538 5.57502 5.67481 5.79821 6.01071 6.09353 6.21740 6.33009 6.54065 6.81703 6.86635 7.03207 7.22360 7.31987 7.42704 7.53145 7.83459 8.02792 8.13358 9.03601 9.74869 10.76257 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.003488 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.316702 B = 8025.444478 C = 8843.362811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.145 3.855 11 C -0.218 4.218 12 C -0.096 4.096 13 C 0.048 3.952 14 N -0.646 5.646 15 C 0.420 3.580 16 C -0.239 4.239 17 C -0.023 4.023 18 C -0.224 4.224 19 C 0.226 3.774 20 Cl -0.035 7.035 21 N -0.521 5.521 22 C -0.062 4.062 23 C -0.175 4.175 24 H 0.269 0.731 25 H 0.130 0.870 26 H 0.108 0.892 27 H 0.413 0.587 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 -18.924 0.015 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.091 3.909 11 C -0.238 4.238 12 C -0.116 4.116 13 C -0.045 4.045 14 N -0.269 5.269 15 C 0.184 3.816 16 C -0.264 4.264 17 C -0.049 4.049 18 C -0.248 4.248 19 C 0.060 3.940 20 Cl -0.006 7.006 21 N -0.241 5.241 22 C -0.082 4.082 23 C -0.195 4.195 24 H 0.079 0.921 25 H 0.148 0.852 26 H 0.126 0.874 27 H 0.250 0.750 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.142 0.858 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.943 -17.766 0.257 19.463 hybrid contribution 1.185 0.151 -0.146 1.203 sum 9.127 -17.615 0.111 19.840 Atomic orbital electron populations 1.70057 1.05923 1.27587 1.46219 1.25275 0.95837 0.98791 0.96670 0.85722 0.78911 0.80192 0.78656 1.19923 1.20288 1.19241 1.21302 0.91745 0.80922 1.52734 0.89144 1.83993 1.34201 1.11355 1.78586 1.19400 0.90198 0.88124 0.93177 1.20941 0.93683 0.98349 1.10821 1.20429 0.98313 0.91176 1.01698 1.17212 0.90723 0.84474 1.12120 1.41875 1.22231 1.04601 1.58221 1.18127 0.88553 0.86441 0.88519 1.21366 1.04147 0.91970 1.08921 1.21213 0.93504 0.97884 0.92256 1.21466 0.98723 0.97620 1.07039 1.21314 0.89696 0.89545 0.93423 1.98415 1.32628 1.98602 1.70978 1.66654 1.13991 1.29660 1.13770 1.20576 0.91667 0.97505 0.98476 1.20110 0.99637 0.89813 1.09973 0.92066 0.85222 0.87365 0.75023 0.84583 0.84129 0.84352 0.85792 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.98 9.48 30.87 0.29 -10.68 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -5.14 9.76 -0.03 0.00 -5.14 16 10 C 0.14 3.55 6.65 -39.08 -0.26 3.29 16 11 C -0.22 -4.73 9.16 -39.42 -0.36 -5.09 16 12 C -0.10 -1.74 9.95 -39.40 -0.39 -2.13 16 13 C 0.05 0.85 6.31 -83.67 -0.53 0.32 16 14 N -0.65 -8.86 5.48 -9.93 -0.05 -8.92 16 15 C 0.42 5.72 7.21 -154.93 -1.12 4.60 16 16 C -0.24 -2.38 9.94 -39.22 -0.39 -2.77 16 17 C -0.02 -0.20 10.16 -39.32 -0.40 -0.60 16 18 C -0.22 -2.29 9.87 -39.37 -0.39 -2.68 16 19 C 0.23 3.04 7.27 -17.47 -0.13 2.91 16 20 Cl -0.03 -0.45 29.10 -51.86 -1.51 -1.96 16 21 N -0.52 -8.14 7.04 -9.53 -0.07 -8.21 16 22 C -0.06 -1.21 8.57 -39.40 -0.34 -1.54 16 23 C -0.18 -3.88 9.98 -39.42 -0.39 -4.28 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.13 2.79 5.63 -52.49 -0.30 2.50 16 26 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 27 H 0.41 4.24 8.81 -40.82 -0.36 3.88 16 28 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.12 2.33 6.23 -52.49 -0.33 2.00 16 32 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 300.44 15.07 4.53 4.53 Total: -1.00 -32.17 300.44 -8.37 -40.54 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.50 Total: 6.03 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -4.50 Total: -17.68 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.64 Total: -41.90 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.17 -8.37 -40.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.066 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds