Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86800 * 119.99958 * 2 1 4 4 H 1.48494 * 109.47179 * 269.99570 * 3 2 1 5 5 H 1.48495 * 109.47477 * 29.99913 * 3 2 1 6 6 H 1.48501 * 109.46724 * 149.99826 * 3 2 1 7 7 C 1.38612 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00219 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.35786 * 116.99770 * 174.89246 * 9 7 2 11 11 C 1.38912 * 119.99515 * 5.52297 * 10 9 7 12 12 C 1.37997 * 120.00253 * 180.02562 * 11 10 9 13 13 C 1.38955 * 119.99662 * 359.97438 * 12 11 10 14 14 N 1.39849 * 120.00605 * 179.97438 * 13 12 11 15 15 C 1.39060 * 119.99763 * 147.37615 * 14 13 12 16 16 C 1.39118 * 119.69283 * 174.55373 * 15 14 13 17 17 C 1.38343 * 119.12297 * 180.02562 * 16 15 14 18 18 C 1.38831 * 118.51922 * 359.97438 * 17 16 15 19 19 C 1.38208 * 119.31986 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.58506 * 179.97438 * 19 18 17 21 21 N 1.32041 * 120.82861 * 0.02562 * 19 18 17 22 22 C 1.38962 * 119.99065 * 0.26805 * 13 12 11 23 23 C 1.38001 * 119.98972 * 359.49525 * 22 13 12 24 24 H 0.97006 * 119.99835 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99597 * 0.02562 * 11 10 9 26 26 H 1.08008 * 120.00155 * 179.97438 * 12 11 10 27 27 H 0.96996 * 119.99870 * 327.38025 * 14 13 12 28 28 H 1.07998 * 120.43930 * 0.02562 * 16 15 14 29 29 H 1.08001 * 120.74045 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.33691 * 180.02562 * 18 17 16 31 31 H 1.07996 * 120.00425 * 179.70903 * 22 13 12 32 32 H 1.07998 * 119.99344 * 180.22848 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5474 1.4401 0.7001 7 6 2.0089 -1.2004 0.0005 8 1 3.0888 -1.2005 0.0010 9 8 1.3347 -2.3680 0.0016 10 6 2.0701 -3.5044 -0.1057 11 6 3.4576 -3.4375 -0.0944 12 6 4.2050 -4.5923 -0.2039 13 6 3.5697 -5.8222 -0.3249 14 7 4.3271 -6.9926 -0.4364 15 6 3.8491 -8.1836 0.0991 16 6 4.5515 -9.3655 -0.1133 17 6 4.0651 -10.5437 0.4244 18 6 2.8883 -10.5006 1.1599 19 6 2.2416 -9.2913 1.3317 20 17 0.7693 -9.2295 2.2495 21 7 2.7290 -8.1826 0.8058 22 6 2.1818 -5.8884 -0.3412 23 6 1.4347 -4.7338 -0.2268 24 1 -0.4850 0.8401 -0.0004 25 1 3.9512 -2.4816 0.0001 26 1 5.2838 -4.5402 -0.1955 27 1 5.1857 -6.9735 -0.8872 28 1 5.4644 -9.3634 -0.6903 29 1 4.5891 -11.4763 0.2754 30 1 2.4825 -11.4028 1.5932 31 1 1.6878 -6.8437 -0.4400 32 1 0.3560 -4.7856 -0.2357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = 24.739394 kcal Electronic energy + Delta-G solvation = -19273.919860 eV Core-core repulsion = 16032.765223 eV Total energy + Delta-G solvation = -3241.154637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.55356 -40.59649 -38.72142 -37.58217 -35.91315 -34.17467 -33.44363 -31.89758 -31.15146 -28.83989 -27.21563 -24.72441 -24.27567 -23.39538 -22.40328 -19.95752 -19.07081 -18.80968 -18.17378 -17.15263 -16.63587 -16.32918 -16.16732 -15.87808 -15.72109 -15.45607 -15.09005 -14.55418 -14.24194 -14.05760 -13.73722 -13.39076 -13.22186 -12.93305 -12.90976 -12.60032 -12.39140 -12.26024 -12.11598 -11.56634 -11.19036 -10.80997 -10.65048 -10.46203 -9.78888 -9.48993 -8.44098 -8.20414 -6.10660 0.04048 0.29087 0.56820 0.83765 0.88220 1.36372 1.46281 1.54240 2.16522 2.20900 2.71568 2.90726 3.20055 3.55853 3.63863 3.98065 4.07055 4.13592 4.17629 4.30014 4.47351 4.52995 4.66843 4.84869 5.01328 5.09746 5.23092 5.24158 5.36603 5.48134 5.57578 5.68404 5.90700 6.05149 6.34371 6.37895 7.00418 7.14252 7.82973 8.79739 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.027901 B = 0.003488 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.316702 B = 8025.444478 C = 8843.362811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.026 4.026 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.235 6.235 10 C 0.101 3.899 11 C -0.219 4.219 12 C -0.092 4.092 13 C 0.086 3.914 14 N -0.644 5.644 15 C 0.390 3.610 16 C -0.217 4.217 17 C -0.015 4.015 18 C -0.207 4.207 19 C 0.194 3.806 20 Cl -0.050 7.050 21 N -0.566 5.566 22 C -0.066 4.066 23 C -0.186 4.186 24 H 0.271 0.729 25 H 0.128 0.872 26 H 0.153 0.847 27 H 0.432 0.568 28 H 0.174 0.826 29 H 0.189 0.811 30 H 0.164 0.836 31 H 0.131 0.869 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.032 -21.898 -0.460 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.223 4.223 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.175 1.175 7 C -0.488 4.488 8 H 0.122 0.878 9 O -0.142 6.142 10 C 0.051 3.949 11 C -0.238 4.238 12 C -0.113 4.113 13 C -0.009 4.009 14 N -0.272 5.272 15 C 0.156 3.844 16 C -0.241 4.241 17 C -0.040 4.040 18 C -0.230 4.230 19 C 0.030 3.970 20 Cl -0.021 7.021 21 N -0.285 5.285 22 C -0.087 4.087 23 C -0.206 4.206 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.170 0.830 27 H 0.273 0.727 28 H 0.191 0.809 29 H 0.206 0.794 30 H 0.181 0.819 31 H 0.149 0.851 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.987 -20.860 -0.211 24.060 hybrid contribution 0.092 0.506 0.005 0.514 sum 12.079 -20.354 -0.207 23.669 Atomic orbital electron populations 1.70217 1.08113 1.28683 1.49239 1.26618 0.96852 1.02822 0.96008 0.84566 0.77819 0.74450 0.79238 1.18750 1.19828 1.17451 1.21848 0.92605 0.81431 1.52897 0.87844 1.83956 1.35902 1.12519 1.81781 1.19837 0.91709 0.87699 0.95684 1.21069 0.92631 0.99772 1.10373 1.20767 1.00272 0.89898 1.00350 1.17292 0.90291 0.86163 1.07196 1.41722 1.22703 1.03369 1.59395 1.18496 0.89007 0.87323 0.89597 1.21804 1.04361 0.90569 1.07352 1.21808 0.92558 0.99311 0.90358 1.21894 0.98518 0.97104 1.05505 1.21580 0.90175 0.90365 0.94897 1.98405 1.33664 1.98644 1.71433 1.66408 1.15526 1.31550 1.15062 1.20676 0.92837 0.96594 0.98575 1.20226 0.99565 0.90339 1.10507 0.91960 0.85427 0.82974 0.72710 0.80871 0.79432 0.81864 0.85095 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.05 13.67 21.61 0.30 -57.75 16 2 C -0.03 -1.51 5.49 84.82 0.47 -1.04 16 3 Si 1.02 43.39 29.55 68.60 2.03 45.41 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.41 -24.38 9.48 67.91 0.64 -23.73 16 8 H 0.10 5.54 5.20 -2.91 -0.02 5.53 16 9 O -0.23 -14.59 9.76 -23.02 -0.22 -14.81 16 10 C 0.10 5.25 6.65 22.59 0.15 5.40 16 11 C -0.22 -9.60 9.16 22.37 0.20 -9.40 16 12 C -0.09 -3.17 9.95 22.38 0.22 -2.94 16 13 C 0.09 2.87 6.31 38.21 0.24 3.12 16 14 N -0.64 -15.41 5.48 -185.34 -1.02 -16.42 16 15 C 0.39 9.31 7.21 133.03 0.96 10.27 16 16 C -0.22 -3.12 9.94 22.51 0.22 -2.90 16 17 C -0.01 -0.17 10.16 22.44 0.23 0.06 16 18 C -0.21 -3.40 9.87 22.40 0.22 -3.18 16 19 C 0.19 4.86 7.27 84.65 0.62 5.47 16 20 Cl -0.05 -1.29 29.10 -2.72 -0.08 -1.37 16 21 N -0.57 -16.76 7.04 -184.07 -1.30 -18.05 16 22 C -0.07 -2.60 8.57 22.39 0.19 -2.41 16 23 C -0.19 -8.74 9.98 22.38 0.22 -8.52 16 24 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 25 H 0.13 5.57 5.63 -2.91 -0.02 5.55 16 26 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 27 H 0.43 6.82 8.81 -92.71 -0.82 6.00 16 28 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 30 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.13 4.96 6.23 -2.91 -0.02 4.94 16 32 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -77.72 300.44 4.66 -73.06 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.37 Total: 19.73 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.59 Total: -29.80 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.02 Total: -92.23 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.22 Total: -14.81 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -77.72 4.66 -73.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.799 kcal (2) G-P(sol) polarization free energy of solvation -77.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds