Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48509 * 109.46894 * 269.99644 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99014 * 3 2 1 6 6 H 1.48497 * 109.47434 * 149.99447 * 3 2 1 7 7 C 1.38618 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00294 * 0.02562 * 7 2 1 9 9 O 1.34818 * 119.99628 * 179.97438 * 7 2 1 10 10 C 1.35780 * 116.99808 * 174.88875 * 9 7 2 11 11 C 1.38912 * 119.99418 * 5.53028 * 10 9 7 12 12 C 1.38001 * 120.00728 * 180.02562 * 11 10 9 13 13 C 1.38959 * 119.99212 * 359.97232 * 12 11 10 14 14 N 1.39837 * 120.00788 * 180.02562 * 13 12 11 15 15 C 1.39119 * 119.99860 * 147.34326 * 14 13 12 16 16 N 1.32415 * 119.71513 * 354.75970 * 15 14 13 17 17 C 1.31938 * 121.63610 * 179.67823 * 16 15 14 18 18 C 1.38071 * 120.88032 * 0.58393 * 17 16 15 19 19 C 1.38850 * 119.33759 * 359.43026 * 18 17 16 20 20 C 1.38426 * 118.49174 * 0.27301 * 19 18 17 21 21 Cl 1.73598 * 120.46251 * 180.02562 * 20 19 18 22 22 C 1.38966 * 119.98991 * 0.28460 * 13 12 11 23 23 C 1.38000 * 119.99147 * 359.48389 * 22 13 12 24 24 H 0.97004 * 119.99608 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99859 * 359.97438 * 11 10 9 26 26 H 1.07998 * 120.00614 * 179.97438 * 12 11 10 27 27 H 0.96997 * 119.99996 * 327.35324 * 14 13 12 28 28 H 1.08002 * 119.56506 * 180.30693 * 17 16 15 29 29 H 1.07999 * 120.33499 * 179.69912 * 18 17 16 30 30 H 1.07999 * 120.75514 * 180.25213 * 19 18 17 31 31 H 1.08001 * 120.00279 * 179.70180 * 22 13 12 32 32 H 1.07994 * 119.99650 * 180.23149 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4975 2.0463 -1.4002 5 1 1.4473 2.6527 0.6998 6 1 3.5474 1.4402 0.7001 7 6 2.0088 -1.2005 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3570 -1.2005 0.0000 10 6 3.9735 -2.4054 0.1084 11 6 3.2217 -3.5735 0.0975 12 6 3.8479 -4.7983 0.2082 13 6 5.2307 -4.8630 0.3299 14 7 5.8656 -6.1039 0.4414 15 6 7.1366 -6.2856 -0.0943 16 7 7.6971 -5.3143 -0.7983 17 6 8.9029 -5.4435 -1.3182 18 6 9.6236 -6.6099 -1.1552 19 6 9.0725 -7.6535 -0.4236 20 6 7.8083 -7.4870 0.1150 21 17 7.0708 -8.7582 1.0390 22 6 5.9820 -3.6941 0.3461 23 6 5.3557 -2.4698 0.2306 24 1 -0.4850 0.8401 -0.0004 25 1 2.1470 -3.5232 0.0033 26 1 3.2634 -5.7064 0.2001 27 1 5.4198 -6.8380 0.8922 28 1 9.3301 -4.6278 -1.8825 29 1 10.6079 -6.7079 -1.5886 30 1 9.6178 -8.5744 -0.2784 31 1 7.0563 -3.7440 0.4455 32 1 5.9399 -1.5616 0.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = 45.199484 kcal Electronic energy + Delta-G solvation = -19323.632368 eV Core-core repulsion = 16083.364947 eV Total energy + Delta-G solvation = -3240.267421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58524 -39.11884 -37.27611 -36.78612 -34.75059 -32.39303 -32.32264 -30.50088 -30.00212 -27.63735 -25.19491 -23.84142 -23.09197 -22.03796 -20.84323 -18.32328 -17.66225 -17.53957 -16.94680 -16.50664 -15.56524 -14.92529 -14.91207 -14.55648 -13.94202 -13.84483 -13.71447 -13.33316 -12.85193 -12.56698 -12.48043 -12.28767 -12.14708 -11.94926 -11.64392 -11.33446 -11.02540 -10.76505 -10.48784 -10.16237 -9.74456 -9.52055 -9.35095 -8.89426 -8.28341 -8.26980 -6.83732 -6.40360 -4.05874 0.88294 1.11566 1.90444 2.11234 2.28784 3.10789 3.24128 3.26881 3.41799 3.64582 4.25115 4.36933 4.51177 4.59232 4.82842 4.89983 4.95925 5.12359 5.26177 5.50808 5.62521 5.70532 5.87423 6.04527 6.10996 6.24843 6.45288 6.71913 6.74993 6.89813 7.22505 7.31059 7.41127 7.63239 7.81087 8.02716 8.10960 8.95071 9.57954 10.67324 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.003426 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.758281 B = 8170.304632 C = 8871.062122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.150 3.850 11 C -0.203 4.203 12 C -0.097 4.097 13 C 0.059 3.941 14 N -0.643 5.643 15 C 0.414 3.586 16 N -0.511 5.511 17 C 0.155 3.845 18 C -0.231 4.231 19 C -0.024 4.024 20 C -0.161 4.161 21 Cl -0.067 7.067 22 C -0.066 4.066 23 C -0.176 4.176 24 H 0.279 0.721 25 H 0.137 0.863 26 H 0.112 0.888 27 H 0.413 0.587 28 H 0.162 0.838 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.393 -14.591 -0.209 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.123 6.123 10 C 0.097 3.903 11 C -0.223 4.223 12 C -0.117 4.117 13 C -0.034 4.034 14 N -0.267 5.267 15 C 0.178 3.822 16 N -0.228 5.228 17 C -0.005 4.005 18 C -0.254 4.254 19 C -0.050 4.050 20 C -0.195 4.195 21 Cl -0.038 7.038 22 C -0.086 4.086 23 C -0.196 4.196 24 H 0.089 0.911 25 H 0.154 0.846 26 H 0.130 0.870 27 H 0.252 0.748 28 H 0.180 0.820 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.145 0.855 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 16.639 -13.427 -0.266 21.382 hybrid contribution 0.302 -0.654 0.288 0.776 sum 16.941 -14.081 0.022 22.029 Atomic orbital electron populations 1.69662 1.05561 1.28453 1.48232 1.24462 0.95028 0.98839 0.95724 0.86175 0.80332 0.81416 0.78957 1.19893 1.20872 1.18304 1.20755 0.76970 0.96595 1.52059 0.87672 1.83579 1.22508 1.25659 1.80525 1.19135 0.91679 0.85503 0.93937 1.21068 1.01108 0.91168 1.08963 1.20509 0.92216 0.97532 1.01489 1.17271 0.91272 0.83925 1.10982 1.42008 1.13859 1.13065 1.57772 1.18132 0.86871 0.87862 0.89366 1.67701 1.12915 1.29333 1.12876 1.22687 0.88457 0.96457 0.92854 1.21820 1.02961 0.94905 1.05760 1.21229 0.91825 0.99231 0.92701 1.21197 0.97585 0.91915 1.08819 1.98346 1.82511 1.50396 1.72581 1.20583 0.99243 0.89943 0.98826 1.20097 0.91761 0.97554 1.10139 0.91091 0.84552 0.87045 0.74843 0.82044 0.84423 0.84187 0.85472 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.96 55.48 0.77 -24.66 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 21.67 28.61 -169.99 -4.86 16.80 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.39 -10.90 9.94 30.87 0.31 -10.59 16 8 H 0.11 3.00 5.43 -52.49 -0.28 2.72 16 9 O -0.22 -5.72 8.58 -0.01 0.00 -5.72 16 10 C 0.15 3.45 6.65 -39.08 -0.26 3.19 16 11 C -0.20 -4.35 9.16 -39.42 -0.36 -4.71 16 12 C -0.10 -1.76 9.95 -39.40 -0.39 -2.15 16 13 C 0.06 1.02 6.31 -83.67 -0.53 0.49 16 14 N -0.64 -9.33 5.44 -9.90 -0.05 -9.39 16 15 C 0.41 5.71 7.22 -154.86 -1.12 4.60 16 16 N -0.51 -7.15 7.06 -12.38 -0.09 -7.24 16 17 C 0.15 1.61 11.17 -17.57 -0.20 1.41 16 18 C -0.23 -1.96 10.10 -39.42 -0.40 -2.36 16 19 C -0.02 -0.22 9.97 -39.29 -0.39 -0.61 16 20 C -0.16 -1.84 6.36 -39.15 -0.25 -2.09 16 21 Cl -0.07 -0.68 27.63 -51.86 -1.43 -2.12 16 22 C -0.07 -1.18 8.57 -39.40 -0.34 -1.52 16 23 C -0.18 -3.53 9.98 -39.42 -0.39 -3.92 16 24 H 0.28 7.44 8.31 -40.82 -0.34 7.11 16 25 H 0.14 3.04 5.63 -52.49 -0.30 2.75 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.41 5.22 7.49 -40.82 -0.31 4.91 16 28 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 2.13 6.22 -52.49 -0.33 1.81 16 32 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 296.87 15.07 4.47 4.47 Total: -1.00 -30.29 296.87 -8.07 -38.35 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -2.46 Total: 6.10 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -4.41 Total: -16.60 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.63 Total: -41.29 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: 0.00 Total: -5.72 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.80 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.43 Total: -2.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.29 -8.07 -38.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.554 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds