Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48509 * 109.46894 * 269.99644 * 3 2 1 5 5 H 1.48502 * 109.47106 * 29.99014 * 3 2 1 6 6 H 1.48497 * 109.47434 * 149.99447 * 3 2 1 7 7 C 1.38618 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00294 * 0.02562 * 7 2 1 9 9 O 1.34818 * 119.99628 * 179.97438 * 7 2 1 10 10 C 1.35780 * 116.99808 * 174.88875 * 9 7 2 11 11 C 1.38912 * 119.99418 * 5.53028 * 10 9 7 12 12 C 1.38001 * 120.00728 * 180.02562 * 11 10 9 13 13 C 1.38959 * 119.99212 * 359.97232 * 12 11 10 14 14 N 1.39837 * 120.00788 * 180.02562 * 13 12 11 15 15 C 1.39119 * 119.99860 * 147.34326 * 14 13 12 16 16 N 1.32415 * 119.71513 * 354.75970 * 15 14 13 17 17 C 1.31938 * 121.63610 * 179.67823 * 16 15 14 18 18 C 1.38071 * 120.88032 * 0.58393 * 17 16 15 19 19 C 1.38850 * 119.33759 * 359.43026 * 18 17 16 20 20 C 1.38426 * 118.49174 * 0.27301 * 19 18 17 21 21 Cl 1.73598 * 120.46251 * 180.02562 * 20 19 18 22 22 C 1.38966 * 119.98991 * 0.28460 * 13 12 11 23 23 C 1.38000 * 119.99147 * 359.48389 * 22 13 12 24 24 H 0.97004 * 119.99608 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99859 * 359.97438 * 11 10 9 26 26 H 1.07998 * 120.00614 * 179.97438 * 12 11 10 27 27 H 0.96997 * 119.99996 * 327.35324 * 14 13 12 28 28 H 1.08002 * 119.56506 * 180.30693 * 17 16 15 29 29 H 1.07999 * 120.33499 * 179.69912 * 18 17 16 30 30 H 1.07999 * 120.75514 * 180.25213 * 19 18 17 31 31 H 1.08001 * 120.00279 * 179.70180 * 22 13 12 32 32 H 1.07994 * 119.99650 * 180.23149 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4975 2.0463 -1.4002 5 1 1.4473 2.6527 0.6998 6 1 3.5474 1.4402 0.7001 7 6 2.0088 -1.2005 0.0005 8 1 1.4689 -2.1358 0.0005 9 8 3.3570 -1.2005 0.0000 10 6 3.9735 -2.4054 0.1084 11 6 3.2217 -3.5735 0.0975 12 6 3.8479 -4.7983 0.2082 13 6 5.2307 -4.8630 0.3299 14 7 5.8656 -6.1039 0.4414 15 6 7.1366 -6.2856 -0.0943 16 7 7.6971 -5.3143 -0.7983 17 6 8.9029 -5.4435 -1.3182 18 6 9.6236 -6.6099 -1.1552 19 6 9.0725 -7.6535 -0.4236 20 6 7.8083 -7.4870 0.1150 21 17 7.0708 -8.7582 1.0390 22 6 5.9820 -3.6941 0.3461 23 6 5.3557 -2.4698 0.2306 24 1 -0.4850 0.8401 -0.0004 25 1 2.1470 -3.5232 0.0033 26 1 3.2634 -5.7064 0.2001 27 1 5.4198 -6.8380 0.8922 28 1 9.3301 -4.6278 -1.8825 29 1 10.6079 -6.7079 -1.5886 30 1 9.6178 -8.5744 -0.2784 31 1 7.0563 -3.7440 0.4455 32 1 5.9399 -1.5616 0.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = 28.128725 kcal Electronic energy + Delta-G solvation = -19324.372612 eV Core-core repulsion = 16083.364947 eV Total energy + Delta-G solvation = -3241.007664 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59424 -40.69974 -38.78860 -37.61195 -36.06789 -34.36930 -33.23553 -31.94284 -31.22231 -29.05305 -27.06569 -24.79465 -24.21748 -23.47528 -22.31364 -19.95341 -19.18617 -18.86227 -18.33873 -17.37192 -16.65441 -16.53840 -16.04950 -15.65615 -15.61691 -15.51205 -15.21955 -14.44139 -14.28087 -14.14033 -13.98714 -13.52915 -13.35382 -13.17190 -13.01195 -12.77945 -12.49651 -12.15277 -11.96112 -11.77855 -11.28609 -10.87013 -10.59221 -10.41600 -9.81668 -9.52149 -8.47267 -8.26078 -6.17900 0.02331 0.23452 0.53556 0.81258 1.07275 1.33761 1.38289 1.54260 2.03174 2.30803 2.71146 2.86166 3.07637 3.21523 3.52572 3.75506 4.03005 4.08391 4.14214 4.21865 4.50200 4.53930 4.61644 4.83888 4.95865 5.13904 5.15538 5.18240 5.42689 5.50896 5.57577 5.78249 5.80319 6.04108 6.27177 6.36653 6.87526 7.12915 7.62565 8.64477 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.003426 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.758281 B = 8170.304632 C = 8871.062122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.397 4.397 8 H 0.082 0.918 9 O -0.245 6.245 10 C 0.108 3.892 11 C -0.212 4.212 12 C -0.102 4.102 13 C 0.093 3.907 14 N -0.650 5.650 15 C 0.386 3.614 16 N -0.545 5.545 17 C 0.139 3.861 18 C -0.206 4.206 19 C -0.024 4.024 20 C -0.162 4.162 21 Cl -0.060 7.060 22 C -0.065 4.065 23 C -0.168 4.168 24 H 0.284 0.716 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.421 0.579 28 H 0.186 0.814 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.146 0.854 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.265 -16.298 -0.507 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.473 4.473 8 H 0.099 0.901 9 O -0.152 6.152 10 C 0.059 3.941 11 C -0.231 4.231 12 C -0.123 4.123 13 C -0.002 4.002 14 N -0.277 5.277 15 C 0.152 3.848 16 N -0.262 5.262 17 C -0.019 4.019 18 C -0.228 4.228 19 C -0.051 4.051 20 C -0.196 4.196 21 Cl -0.032 7.032 22 C -0.086 4.086 23 C -0.188 4.188 24 H 0.093 0.907 25 H 0.134 0.866 26 H 0.157 0.843 27 H 0.261 0.739 28 H 0.203 0.797 29 H 0.194 0.806 30 H 0.188 0.812 31 H 0.163 0.837 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 20.589 -15.204 -0.575 25.601 hybrid contribution -0.520 -0.561 0.343 0.839 sum 20.069 -15.766 -0.233 25.522 Atomic orbital electron populations 1.69746 1.06885 1.29507 1.50499 1.25263 0.95868 1.02134 0.95639 0.85220 0.78834 0.77446 0.79258 1.19115 1.19352 1.18598 1.20711 0.78184 0.96125 1.52319 0.90056 1.83519 1.21118 1.27233 1.83358 1.19579 0.92939 0.85153 0.96437 1.21055 1.00288 0.92295 1.09492 1.20704 0.93079 0.97256 1.01211 1.17372 0.90951 0.85276 1.06598 1.41896 1.14636 1.12030 1.59134 1.18282 0.86659 0.89147 0.90741 1.67592 1.14718 1.30274 1.13640 1.23217 0.87594 0.98190 0.92854 1.22273 1.03820 0.93354 1.03348 1.21690 0.90969 1.00619 0.91783 1.21342 0.98215 0.91357 1.08688 1.98353 1.82576 1.49816 1.72423 1.20791 1.00135 0.89316 0.98349 1.20328 0.90562 0.99038 1.08864 0.90658 0.86607 0.84315 0.73926 0.79686 0.80608 0.81231 0.83653 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.96 21.61 0.30 -55.42 16 2 C 0.01 0.52 5.49 84.82 0.47 0.99 16 3 Si 0.97 45.85 28.61 68.60 1.96 47.81 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.40 -23.58 9.94 67.91 0.68 -22.90 16 8 H 0.08 5.04 5.43 -2.91 -0.02 5.02 16 9 O -0.24 -13.43 8.58 -22.95 -0.20 -13.63 16 10 C 0.11 5.15 6.65 22.59 0.15 5.30 16 11 C -0.21 -9.43 9.16 22.37 0.20 -9.22 16 12 C -0.10 -3.67 9.95 22.39 0.22 -3.45 16 13 C 0.09 3.10 6.31 38.21 0.24 3.35 16 14 N -0.65 -17.64 5.44 -185.24 -1.01 -18.65 16 15 C 0.39 9.69 7.22 133.04 0.96 10.65 16 16 N -0.54 -13.80 7.06 -193.08 -1.36 -15.16 16 17 C 0.14 2.37 11.17 84.64 0.95 3.31 16 18 C -0.21 -2.46 10.10 22.38 0.23 -2.23 16 19 C -0.02 -0.34 9.97 22.46 0.22 -0.11 16 20 C -0.16 -3.19 6.36 22.55 0.14 -3.05 16 21 Cl -0.06 -1.08 27.63 -2.72 -0.08 -1.15 16 22 C -0.07 -2.28 8.57 22.39 0.19 -2.08 16 23 C -0.17 -6.74 9.98 22.38 0.22 -6.52 16 24 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 25 H 0.12 5.59 5.63 -2.91 -0.02 5.57 16 26 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 27 H 0.42 9.85 7.49 -92.71 -0.69 9.16 16 28 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 29 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 30 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.15 4.57 6.22 -2.91 -0.02 4.55 16 32 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -68.98 296.87 4.99 -63.99 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.49 Total: 18.17 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 4.87 Total: -25.96 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -2.07 Total: -89.23 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.20 Total: -13.63 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.15 kcal Total: -68.98 4.99 -63.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.121 kcal (2) G-P(sol) polarization free energy of solvation -68.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds