Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47260 * 240.00501 * 3 2 1 5 5 H 1.48506 * 109.46901 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47204 * 120.00344 * 3 2 1 7 7 C 1.39894 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00077 * 197.06325 * 7 2 1 9 9 C 1.41214 * 120.00037 * 17.06425 * 7 2 1 10 10 C 1.40832 * 120.17906 * 25.30315 * 9 7 2 11 11 C 1.36437 * 119.81020 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18479 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81715 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00448 * 185.87403 * 13 12 11 15 15 H 1.09003 * 112.90419 * 25.45465 * 14 13 12 16 16 C 1.53778 * 113.61928 * 156.71164 * 14 13 12 17 17 C 1.53783 * 87.08167 * 139.98202 * 16 14 13 18 18 F 1.39897 * 113.61725 * 89.11514 * 17 16 14 19 19 F 1.39896 * 113.61257 * 220.02113 * 17 16 14 20 20 C 1.53779 * 113.61314 * 254.21292 * 14 13 12 21 21 F 1.39902 * 113.61322 * 334.56393 * 20 14 13 22 22 F 1.39901 * 113.61848 * 105.46567 * 20 14 13 23 23 C 1.39312 * 120.36606 * 0.24896 * 12 11 10 24 24 C 1.36439 * 120.18312 * 359.49100 * 23 12 11 25 25 H 0.96997 * 120.00372 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.09479 * 0.04871 * 10 9 7 27 27 H 1.08003 * 119.90658 * 180.02562 * 11 10 9 28 28 H 1.08999 * 113.61138 * 254.52935 * 16 14 13 29 29 H 1.09001 * 113.61142 * 25.34653 * 16 14 13 30 30 H 1.08003 * 119.90287 * 179.72406 * 23 12 11 31 31 H 1.08002 * 120.09102 * 180.25721 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6963 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0526 -1.2322 0.2739 9 6 1.3489 -2.4074 -0.3599 10 6 0.2183 -2.3679 -1.1988 11 6 -0.4133 -3.5279 -1.5408 12 6 0.0569 -4.7489 -1.0623 13 8 -0.5773 -5.8978 -1.4068 14 6 -0.1257 -7.1007 -0.7814 15 1 0.3469 -6.9249 0.1849 16 6 -1.1837 -8.2165 -0.7559 17 6 -0.0431 -9.1973 -1.0753 18 9 0.5924 -9.7073 0.0619 19 9 -0.3997 -10.1920 -1.9921 20 6 0.6953 -8.0083 -1.7126 21 9 0.4039 -7.8296 -3.0692 22 9 2.0681 -7.9920 -1.4437 23 6 1.1711 -4.7962 -0.2275 24 6 1.8174 -3.6458 0.1198 25 1 -0.4850 0.8400 0.0004 26 1 -0.1474 -1.4222 -1.5705 27 1 -1.2802 -3.4995 -2.1843 28 1 -1.6309 -8.3717 0.2259 29 1 -1.9252 -8.1333 -1.5505 30 1 1.5266 -5.7465 0.1427 31 1 2.6836 -3.6846 0.7637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268678.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = -180.430277 kcal Electronic energy + Delta-G solvation = -22988.042074 eV Core-core repulsion = 18735.504746 eV Total energy + Delta-G solvation = -4252.537328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.067 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.71974 -48.56223 -47.93498 -47.12236 -39.39579 -37.25753 -35.42717 -33.35769 -29.88371 -29.17715 -25.86183 -25.64996 -24.60710 -21.72268 -20.90976 -20.33126 -18.64014 -18.41495 -17.68544 -17.52546 -17.07818 -16.59724 -16.06789 -15.31520 -14.82155 -14.67150 -14.37851 -14.14376 -14.00553 -13.94939 -13.86961 -13.68203 -13.55295 -13.14459 -12.93299 -12.38367 -12.28186 -12.05574 -11.50842 -11.41027 -11.14437 -11.09139 -10.95511 -10.70410 -10.08606 -9.94069 -9.47381 -9.15459 -7.77675 -7.20078 -6.83129 -4.38164 2.34584 2.62499 2.83293 2.91383 3.03271 3.05464 3.13010 3.23858 3.46238 3.65959 3.83940 3.88144 4.19693 4.52312 4.68660 4.87618 4.96363 5.19767 5.46881 5.54850 5.91085 6.07090 6.53386 6.85655 6.97544 7.05786 7.28339 7.42459 7.63390 7.88766 8.06512 8.20634 8.50525 8.78462 8.84368 10.11541 Molecular weight = 290.07amu Principal moments of inertia in cm(-1) A = 0.041465 B = 0.003679 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.109929 B = 7608.031144 C = 7787.829089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.095 3.905 10 C -0.137 4.137 11 C -0.106 4.106 12 C -0.035 4.035 13 O -0.284 6.284 14 C 0.053 3.947 15 H 0.137 0.863 16 C -0.155 4.155 17 C 0.240 3.760 18 F -0.155 7.155 19 F -0.167 7.167 20 C 0.219 3.781 21 F -0.146 7.146 22 F -0.169 7.169 23 C -0.159 4.159 24 C -0.196 4.196 25 H 0.282 0.718 26 H 0.128 0.872 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.095 0.905 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 -12.049 -0.650 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.092 3.908 10 C -0.156 4.156 11 C -0.125 4.125 12 C -0.078 4.078 13 O -0.199 6.199 14 C -0.007 4.007 15 H 0.154 0.846 16 C -0.193 4.193 17 C 0.202 3.798 18 F -0.136 7.136 19 F -0.148 7.148 20 C 0.181 3.819 21 F -0.127 7.127 22 F -0.149 7.149 23 C -0.178 4.178 24 C -0.216 4.216 25 H 0.093 0.907 26 H 0.145 0.855 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.154 0.846 30 H 0.113 0.887 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.767 -11.911 -0.798 12.254 hybrid contribution 0.809 0.400 0.049 0.904 sum -1.958 -11.511 -0.749 11.700 Atomic orbital electron populations 1.69806 1.07550 1.29493 1.35216 1.25904 0.94763 1.01357 0.92220 0.86338 0.80123 0.80096 0.80025 1.18779 1.20292 1.19001 1.19493 0.97880 0.91108 1.40475 0.90351 1.17635 0.91640 0.92143 0.89372 1.20980 0.98625 0.96245 0.99737 1.19807 1.00520 0.89863 1.02320 1.18592 0.97816 0.84082 1.07277 1.86001 1.57807 1.12442 1.63622 1.24491 0.93527 0.85998 0.96680 0.84598 1.24194 0.96943 0.90092 1.08050 1.22784 0.94649 0.83662 0.78732 1.93100 1.82772 1.88382 1.49305 1.93083 1.91928 1.64257 1.65508 1.24206 0.78947 0.97110 0.81655 1.93093 1.92735 1.95441 1.31392 1.93090 1.32009 1.96706 1.93140 1.20392 0.97377 0.97961 1.02030 1.20574 1.03077 0.92400 1.05543 0.90677 0.85474 0.88184 0.85656 0.84551 0.88665 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.82 10.96 55.54 0.61 -19.21 16 2 C 0.08 1.82 5.15 -17.34 -0.09 1.74 16 3 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.81 9.04 -37.83 -0.34 -12.15 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.51 16 9 C 0.09 2.44 5.57 -106.81 -0.59 1.84 16 10 C -0.14 -3.42 8.63 -39.25 -0.34 -3.76 16 11 C -0.11 -2.45 9.92 -39.83 -0.40 -2.84 16 12 C -0.04 -0.77 6.70 -38.78 -0.26 -1.03 16 13 O -0.28 -5.33 9.85 -18.73 -0.18 -5.51 16 14 C 0.05 0.78 3.51 -25.92 -0.09 0.69 16 15 H 0.14 1.90 5.94 -51.93 -0.31 1.59 16 16 C -0.16 -1.64 7.68 -25.92 -0.20 -1.84 16 17 C 0.24 2.95 3.19 -25.92 -0.08 2.86 16 18 F -0.16 -1.91 17.17 2.25 0.04 -1.87 16 19 F -0.17 -2.12 17.20 2.25 0.04 -2.08 16 20 C 0.22 3.29 3.12 -25.92 -0.08 3.21 16 21 F -0.15 -2.39 16.88 2.25 0.04 -2.36 16 22 F -0.17 -2.74 17.20 2.25 0.04 -2.71 16 23 C -0.16 -3.44 8.95 -39.83 -0.36 -3.80 16 24 C -0.20 -4.65 9.74 -39.25 -0.38 -5.04 16 25 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 26 H 0.13 3.26 6.19 -52.49 -0.32 2.93 16 27 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 28 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.14 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.10 1.79 5.89 -52.48 -0.31 1.48 16 31 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -27.10 287.97 -5.51 -32.61 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.18 Total: 3.84 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -3.21 Total: -20.12 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.61 Total: -19.21 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.18 Total: -5.51 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 0.15 Total: -9.01 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.10 -5.51 -32.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268678.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.824 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds