Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48498 * 109.47260 * 240.00501 * 3 2 1 5 5 H 1.48506 * 109.46901 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47204 * 120.00344 * 3 2 1 7 7 C 1.39894 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00077 * 197.06325 * 7 2 1 9 9 C 1.41214 * 120.00037 * 17.06425 * 7 2 1 10 10 C 1.40832 * 120.17906 * 25.30315 * 9 7 2 11 11 C 1.36437 * 119.81020 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18479 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.81715 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00448 * 185.87403 * 13 12 11 15 15 H 1.09003 * 112.90419 * 25.45465 * 14 13 12 16 16 C 1.53778 * 113.61928 * 156.71164 * 14 13 12 17 17 C 1.53783 * 87.08167 * 139.98202 * 16 14 13 18 18 F 1.39897 * 113.61725 * 89.11514 * 17 16 14 19 19 F 1.39896 * 113.61257 * 220.02113 * 17 16 14 20 20 C 1.53779 * 113.61314 * 254.21292 * 14 13 12 21 21 F 1.39902 * 113.61322 * 334.56393 * 20 14 13 22 22 F 1.39901 * 113.61848 * 105.46567 * 20 14 13 23 23 C 1.39312 * 120.36606 * 0.24896 * 12 11 10 24 24 C 1.36439 * 120.18312 * 359.49100 * 23 12 11 25 25 H 0.96997 * 120.00372 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.09479 * 0.04871 * 10 9 7 27 27 H 1.08003 * 119.90658 * 180.02562 * 11 10 9 28 28 H 1.08999 * 113.61138 * 254.52935 * 16 14 13 29 29 H 1.09001 * 113.61142 * 25.34653 * 16 14 13 30 30 H 1.08003 * 119.90287 * 179.72406 * 23 12 11 31 31 H 1.08002 * 120.09102 * 180.25721 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6963 1.2124 7 6 2.0083 -1.2115 -0.0005 8 1 3.0526 -1.2322 0.2739 9 6 1.3489 -2.4074 -0.3599 10 6 0.2183 -2.3679 -1.1988 11 6 -0.4133 -3.5279 -1.5408 12 6 0.0569 -4.7489 -1.0623 13 8 -0.5773 -5.8978 -1.4068 14 6 -0.1257 -7.1007 -0.7814 15 1 0.3469 -6.9249 0.1849 16 6 -1.1837 -8.2165 -0.7559 17 6 -0.0431 -9.1973 -1.0753 18 9 0.5924 -9.7073 0.0619 19 9 -0.3997 -10.1920 -1.9921 20 6 0.6953 -8.0083 -1.7126 21 9 0.4039 -7.8296 -3.0692 22 9 2.0681 -7.9920 -1.4437 23 6 1.1711 -4.7962 -0.2275 24 6 1.8174 -3.6458 0.1198 25 1 -0.4850 0.8400 0.0004 26 1 -0.1474 -1.4222 -1.5705 27 1 -1.2802 -3.4995 -2.1843 28 1 -1.6309 -8.3717 0.2259 29 1 -1.9252 -8.1333 -1.5505 30 1 1.5266 -5.7465 0.1427 31 1 2.6836 -3.6846 0.7637 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268678.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = -193.658352 kcal Electronic energy + Delta-G solvation = -22988.615687 eV Core-core repulsion = 18735.504746 eV Total energy + Delta-G solvation = -4253.110940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.80208 -49.68308 -49.02251 -48.25567 -40.89320 -38.82108 -36.80128 -35.12659 -31.68853 -30.98169 -27.23117 -26.82515 -26.09851 -23.24828 -22.65632 -21.62086 -19.91004 -19.55990 -19.27000 -18.86754 -18.36704 -17.85786 -17.21513 -16.99730 -16.30884 -15.81200 -15.76998 -15.41290 -15.32389 -15.21223 -15.04320 -14.88816 -14.86271 -14.69579 -14.26164 -14.07379 -13.76338 -13.46416 -13.04852 -12.82774 -12.76808 -12.55089 -12.35819 -12.16416 -11.73608 -11.50733 -11.24990 -10.92966 -9.60827 -9.01003 -8.62712 -6.27574 0.87678 0.98492 1.28507 1.40757 1.50186 1.53596 1.85059 2.04603 2.22349 2.32660 2.59677 2.68582 2.80311 3.03402 3.57512 3.66866 3.80214 3.89035 4.24105 4.28487 4.46706 4.54318 4.83641 5.02206 5.16134 5.24466 5.48897 5.59843 5.80827 6.02022 6.20985 6.45709 6.67849 6.91854 6.99909 8.34033 Molecular weight = 290.07amu Principal moments of inertia in cm(-1) A = 0.041465 B = 0.003679 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.109929 B = 7608.031144 C = 7787.829089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.062 3.938 10 C -0.155 4.155 11 C -0.118 4.118 12 C -0.021 4.021 13 O -0.290 6.290 14 C 0.037 3.963 15 H 0.146 0.854 16 C -0.132 4.132 17 C 0.254 3.746 18 F -0.153 7.153 19 F -0.167 7.167 20 C 0.200 3.800 21 F -0.158 7.158 22 F -0.181 7.181 23 C -0.160 4.160 24 C -0.209 4.209 25 H 0.289 0.711 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.126 0.874 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.973 -13.171 -0.158 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.060 3.940 10 C -0.174 4.174 11 C -0.137 4.137 12 C -0.064 4.064 13 O -0.204 6.204 14 C -0.022 4.022 15 H 0.163 0.837 16 C -0.169 4.169 17 C 0.216 3.784 18 F -0.133 7.133 19 F -0.148 7.148 20 C 0.162 3.838 21 F -0.139 7.139 22 F -0.162 7.162 23 C -0.178 4.178 24 C -0.228 4.228 25 H 0.100 0.900 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.181 0.819 29 H 0.168 0.832 30 H 0.143 0.857 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.299 -13.067 -0.306 13.481 hybrid contribution 0.949 0.535 -0.141 1.098 sum -2.350 -12.532 -0.447 12.759 Atomic orbital electron populations 1.69854 1.08861 1.30706 1.35784 1.26700 0.95498 1.04351 0.91260 0.85267 0.78790 0.75794 0.79969 1.18682 1.19187 1.18439 1.19737 0.98125 0.92328 1.42519 0.90526 1.17975 0.92506 0.93223 0.90320 1.20921 0.99320 0.96533 1.00662 1.19999 1.00994 0.90047 1.02648 1.18634 0.97206 0.84987 1.05551 1.85981 1.57559 1.12660 1.64225 1.24954 0.95724 0.85013 0.96531 0.83711 1.24272 0.95619 0.86215 1.10765 1.22600 0.94413 0.83127 0.78290 1.93115 1.82909 1.88308 1.48990 1.93091 1.91800 1.64208 1.65682 1.24704 0.78629 0.99218 0.81287 1.93065 1.92756 1.95711 1.32332 1.93065 1.33034 1.96920 1.93141 1.20670 0.96976 0.98620 1.01540 1.20794 1.03631 0.92583 1.05810 0.90016 0.86935 0.86601 0.81893 0.83157 0.85673 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.07 10.96 21.82 0.24 -41.83 16 2 C 0.04 1.81 5.15 85.24 0.44 2.25 16 3 Si 0.98 37.36 29.59 68.60 2.03 39.39 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.50 -26.28 9.04 23.40 0.21 -26.07 16 8 H 0.08 3.89 7.90 -2.91 -0.02 3.87 16 9 C 0.06 3.28 5.57 -21.28 -0.12 3.16 16 10 C -0.15 -7.99 8.63 22.48 0.19 -7.79 16 11 C -0.12 -5.46 9.92 22.11 0.22 -5.24 16 12 C -0.02 -0.88 6.70 22.79 0.15 -0.73 16 13 O -0.29 -10.25 9.85 -89.93 -0.89 -11.14 16 14 C 0.04 0.99 3.51 31.12 0.11 1.10 16 15 H 0.15 3.59 5.94 -2.39 -0.01 3.57 16 16 C -0.13 -2.25 7.68 31.12 0.24 -2.02 16 17 C 0.25 5.45 3.19 31.12 0.10 5.55 16 18 F -0.15 -3.29 17.17 44.97 0.77 -2.51 16 19 F -0.17 -3.77 17.20 44.97 0.77 -3.00 16 20 C 0.20 5.59 3.12 31.12 0.10 5.69 16 21 F -0.16 -4.96 16.88 44.97 0.76 -4.20 16 22 F -0.18 -5.63 17.20 44.97 0.77 -4.86 16 23 C -0.16 -6.75 8.95 22.11 0.20 -6.55 16 24 C -0.21 -9.96 9.74 22.48 0.22 -9.74 16 25 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 26 H 0.11 6.02 6.19 -2.91 -0.02 6.00 16 27 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 28 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.13 4.44 5.89 -2.91 -0.02 4.42 16 31 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -59.39 287.97 7.71 -51.68 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.19 Total: 16.86 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 2.06 Total: -40.39 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.24 Total: -41.83 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.89 Total: -11.14 kcal Atomic # 9 Polarization: -17.65 SS G_CDS: 3.08 Total: -14.57 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -59.39 7.71 -51.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268678.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.981 kcal (2) G-P(sol) polarization free energy of solvation -59.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds