Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35979 * 117.00262 * 2 1 4 4 C 1.38711 * 119.99708 * 179.97438 * 3 2 1 5 5 C 1.38142 * 120.01993 * 180.02562 * 4 3 2 6 6 C 1.38677 * 120.01258 * 359.97438 * 5 4 3 7 7 O 1.36004 * 120.00167 * 179.97438 * 6 5 4 8 8 C 1.42904 * 117.00322 * 5.64783 * 7 6 5 9 9 H 1.09004 * 109.46767 * 21.65091 * 8 7 6 10 10 C 1.50698 * 109.47314 * 141.64942 * 8 7 6 11 11 H 1.08001 * 119.99988 * 359.97438 * 10 8 7 12 12 C 1.37875 * 119.99937 * 179.97438 * 10 8 7 13 13 N 1.31512 * 120.00218 * 179.97438 * 12 10 8 14 14 Si 1.86802 * 120.00088 * 0.02562 * 12 10 8 15 15 H 1.48505 * 109.46792 * 269.99923 * 14 12 10 16 16 H 1.48501 * 109.46855 * 29.99638 * 14 12 10 17 17 H 1.48493 * 109.47270 * 149.99888 * 14 12 10 18 18 C 1.52999 * 109.46902 * 261.65290 * 8 7 6 19 19 Cl 1.80295 * 109.47360 * 64.99570 * 18 8 7 20 20 C 1.38781 * 119.98955 * 0.25422 * 6 5 4 21 21 Cl 1.73600 * 120.00634 * 179.74975 * 20 6 5 22 22 C 1.38236 * 119.98262 * 359.49210 * 20 6 5 23 23 H 1.09000 * 109.47149 * 300.00455 * 1 2 3 24 24 H 1.09005 * 109.46695 * 59.99672 * 1 2 3 25 25 H 1.08996 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99282 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99150 * 179.97438 * 5 4 3 28 28 H 0.97001 * 120.00527 * 180.02562 * 13 12 10 29 29 H 1.08996 * 109.47012 * 185.00095 * 18 8 7 30 30 H 1.09004 * 109.46600 * 304.99607 * 18 8 7 31 31 H 1.08001 * 120.01057 * 180.23136 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4316 1.2840 0.0005 5 6 4.0593 2.5146 0.0011 6 6 3.3048 3.6781 0.0005 7 8 3.9230 4.8895 0.0016 8 6 5.3467 4.8916 -0.1221 9 1 5.6734 3.9549 -0.5738 10 6 5.7737 6.0450 -0.9928 11 1 5.0320 6.7099 -1.4104 12 6 7.1111 6.2516 -1.2563 13 7 7.4838 7.2579 -2.0166 14 14 8.3939 5.1013 -0.5347 15 1 8.8305 5.6147 0.7887 16 1 7.8079 3.7466 -0.3713 17 1 9.5628 5.0283 -1.4475 18 6 5.9787 5.0372 1.2636 19 17 5.5883 3.5849 2.2580 20 6 1.9188 3.6062 0.0048 21 17 0.9739 5.0625 0.0107 22 6 1.2910 2.3746 -0.0010 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 4.0196 0.3781 0.0014 27 1 5.1379 2.5705 0.0019 28 1 8.4247 7.4031 -2.2023 29 1 7.0601 5.1280 1.1620 30 1 5.5835 5.9284 1.7513 31 1 0.2125 2.3181 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225343687.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -56.697119 kcal Electronic energy + Delta-G solvation = -18844.032563 eV Core-core repulsion = 15564.620973 eV Total energy + Delta-G solvation = -3279.411590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18568 -38.76961 -36.60232 -35.75872 -35.25140 -33.35445 -31.01523 -30.43845 -28.93894 -27.01156 -25.26784 -23.17482 -22.25967 -20.58251 -18.47420 -17.40316 -16.98184 -16.24479 -15.74276 -15.49164 -14.91089 -14.68387 -14.28613 -13.69628 -13.46821 -13.31335 -13.10179 -12.70444 -12.51482 -12.24111 -11.83558 -11.73573 -11.41314 -11.01395 -10.98036 -10.76630 -10.55122 -10.48885 -10.09215 -9.85939 -9.60605 -9.33559 -8.92741 -8.63716 -7.32964 -6.46129 -4.51065 1.32853 1.67866 2.48380 2.82991 2.96073 3.07435 3.13476 3.32854 3.85352 3.90896 4.00536 4.80977 4.92591 4.97764 5.08600 5.21892 5.25841 5.38094 5.54407 5.65231 5.73793 5.85078 5.87111 6.08400 6.24166 6.46589 6.56501 6.74801 7.10544 7.41003 7.81519 8.25887 8.67418 9.07351 10.65233 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.005867 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.223266 B = 4771.506009 C = 5335.411556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.084 3.916 4 C -0.106 4.106 5 C -0.151 4.151 6 C 0.133 3.867 7 O -0.282 6.282 8 C 0.183 3.817 9 H 0.049 0.951 10 C -0.525 4.525 11 H 0.096 0.904 12 C 0.083 3.917 13 N -0.873 5.873 14 Si 0.860 3.140 15 H -0.268 1.268 16 H -0.257 1.257 17 H -0.280 1.280 18 C -0.053 4.053 19 Cl -0.221 7.221 20 C -0.043 4.043 21 Cl -0.060 7.060 22 C -0.167 4.167 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.150 0.850 28 H 0.273 0.727 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.509 -11.132 4.831 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.039 3.961 4 C -0.125 4.125 5 C -0.169 4.169 6 C 0.085 3.915 7 O -0.194 6.194 8 C 0.127 3.873 9 H 0.066 0.934 10 C -0.563 4.563 11 H 0.114 0.886 12 C -0.122 4.122 13 N -0.508 5.508 14 Si 0.688 3.312 15 H -0.194 1.194 16 H -0.181 1.181 17 H -0.206 1.206 18 C -0.116 4.116 19 Cl -0.195 7.195 20 C -0.070 4.070 21 Cl -0.032 7.032 22 C -0.186 4.186 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.114 0.886 26 H 0.151 0.849 27 H 0.167 0.833 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.444 -10.964 4.817 15.251 hybrid contribution 0.707 -0.323 0.475 0.911 sum -8.737 -11.287 5.291 15.222 Atomic orbital electron populations 1.23002 0.78944 1.03529 1.01299 1.86060 1.20890 1.26507 1.89737 1.18589 0.91952 0.83600 1.01929 1.20245 0.91104 0.98130 1.02990 1.21338 1.01310 0.90680 1.03601 1.18709 0.90291 0.86607 0.95904 1.86258 1.23370 1.23885 1.85896 1.20904 0.75287 1.00517 0.90635 0.93365 1.20792 0.93988 1.12440 1.29047 0.88621 1.24823 0.97768 0.95043 0.94611 1.69805 1.17486 1.28111 1.35432 0.87242 0.82342 0.82378 0.79265 1.19431 1.18134 1.20597 1.26262 1.02622 0.88345 0.94353 1.98669 1.95697 1.49134 1.75954 1.19796 0.88887 0.87901 1.10443 1.98345 1.71652 1.36130 1.97032 1.20757 1.00033 0.89956 1.07854 0.92832 0.92776 0.88551 0.84922 0.83279 0.91604 0.89336 0.87919 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.17 10.50 -19.67 -0.21 -4.38 16 3 C 0.08 1.25 6.69 -39.24 -0.26 0.99 16 4 C -0.11 -1.65 9.98 -39.44 -0.39 -2.04 16 5 C -0.15 -2.67 7.20 -39.45 -0.28 -2.95 16 6 C 0.13 2.57 6.21 -39.22 -0.24 2.33 16 7 O -0.28 -6.17 9.14 -19.75 -0.18 -6.35 16 8 C 0.18 4.10 1.74 -27.88 -0.05 4.05 16 9 H 0.05 1.08 4.54 -51.93 -0.24 0.84 16 10 C -0.53 -13.82 9.47 -34.44 -0.33 -14.14 16 11 H 0.10 2.80 8.06 -52.49 -0.42 2.38 16 12 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 13 N -0.87 -24.54 13.96 55.43 0.77 -23.77 16 14 Si 0.86 19.13 24.41 -169.99 -4.15 14.98 16 15 H -0.27 -5.73 6.83 56.52 0.39 -5.34 16 16 H -0.26 -5.39 6.53 56.52 0.37 -5.02 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 C -0.05 -1.09 5.83 37.16 0.22 -0.88 16 19 Cl -0.22 -4.06 25.67 -51.86 -1.33 -5.39 16 20 C -0.04 -0.74 6.33 -39.38 -0.25 -0.99 16 21 Cl -0.06 -1.01 28.50 -51.86 -1.48 -2.49 16 22 C -0.17 -2.47 8.82 -39.42 -0.35 -2.81 16 23 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.15 2.71 4.82 -52.49 -0.25 2.45 16 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.09 1.84 3.21 -51.93 -0.17 1.67 16 30 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 31 H 0.14 1.65 6.29 -52.49 -0.33 1.32 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -27.74 285.06 -5.98 -33.71 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -2.66 Total: 2.53 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.04 Total: -13.13 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.77 Total: -23.77 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.39 Total: -10.73 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.15 Total: 14.98 kcal Atomic # 17 Polarization: -5.07 SS G_CDS: -2.81 Total: -7.88 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.74 -5.98 -33.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225343687.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.984 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds