Wall clock time and date at job start Tue Mar 31 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35979 * 117.00262 * 2 1 4 4 C 1.38711 * 119.99708 * 179.97438 * 3 2 1 5 5 C 1.38142 * 120.01993 * 180.02562 * 4 3 2 6 6 C 1.38677 * 120.01258 * 359.97438 * 5 4 3 7 7 O 1.36004 * 120.00167 * 179.97438 * 6 5 4 8 8 C 1.42904 * 117.00322 * 5.64783 * 7 6 5 9 9 H 1.09004 * 109.46767 * 21.65091 * 8 7 6 10 10 C 1.50698 * 109.47314 * 141.64942 * 8 7 6 11 11 H 1.08001 * 119.99988 * 359.97438 * 10 8 7 12 12 C 1.37875 * 119.99937 * 179.97438 * 10 8 7 13 13 N 1.31512 * 120.00218 * 179.97438 * 12 10 8 14 14 Si 1.86802 * 120.00088 * 0.02562 * 12 10 8 15 15 H 1.48505 * 109.46792 * 269.99923 * 14 12 10 16 16 H 1.48501 * 109.46855 * 29.99638 * 14 12 10 17 17 H 1.48493 * 109.47270 * 149.99888 * 14 12 10 18 18 C 1.52999 * 109.46902 * 261.65290 * 8 7 6 19 19 Cl 1.80295 * 109.47360 * 64.99570 * 18 8 7 20 20 C 1.38781 * 119.98955 * 0.25422 * 6 5 4 21 21 Cl 1.73600 * 120.00634 * 179.74975 * 20 6 5 22 22 C 1.38236 * 119.98262 * 359.49210 * 20 6 5 23 23 H 1.09000 * 109.47149 * 300.00455 * 1 2 3 24 24 H 1.09005 * 109.46695 * 59.99672 * 1 2 3 25 25 H 1.08996 * 109.47022 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99282 * 359.97438 * 4 3 2 27 27 H 1.08001 * 119.99150 * 179.97438 * 5 4 3 28 28 H 0.97001 * 120.00527 * 180.02562 * 13 12 10 29 29 H 1.08996 * 109.47012 * 185.00095 * 18 8 7 30 30 H 1.09004 * 109.46600 * 304.99607 * 18 8 7 31 31 H 1.08001 * 120.01057 * 180.23136 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4316 1.2840 0.0005 5 6 4.0593 2.5146 0.0011 6 6 3.3048 3.6781 0.0005 7 8 3.9230 4.8895 0.0016 8 6 5.3467 4.8916 -0.1221 9 1 5.6734 3.9549 -0.5738 10 6 5.7737 6.0450 -0.9928 11 1 5.0320 6.7099 -1.4104 12 6 7.1111 6.2516 -1.2563 13 7 7.4838 7.2579 -2.0166 14 14 8.3939 5.1013 -0.5347 15 1 8.8305 5.6147 0.7887 16 1 7.8079 3.7466 -0.3713 17 1 9.5628 5.0283 -1.4475 18 6 5.9787 5.0372 1.2636 19 17 5.5883 3.5849 2.2580 20 6 1.9188 3.6062 0.0048 21 17 0.9739 5.0625 0.0107 22 6 1.2910 2.3746 -0.0010 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 4.0196 0.3781 0.0014 27 1 5.1379 2.5705 0.0019 28 1 8.4247 7.4031 -2.2023 29 1 7.0601 5.1280 1.1620 30 1 5.5835 5.9284 1.7513 31 1 0.2125 2.3181 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225343687.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:13 Heat of formation + Delta-G solvation = -73.558227 kcal Electronic energy + Delta-G solvation = -18844.763715 eV Core-core repulsion = 15564.620973 eV Total energy + Delta-G solvation = -3280.142742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.45937 -40.07336 -37.94322 -37.08835 -36.75497 -35.25087 -32.63202 -31.84463 -30.13983 -27.94824 -27.15689 -24.58086 -23.59828 -22.07521 -19.84184 -18.92658 -18.58479 -17.63369 -17.11145 -16.68546 -16.31595 -16.00572 -15.68824 -15.19016 -14.97518 -14.70452 -14.63972 -14.12644 -13.96732 -13.59134 -13.15027 -12.91604 -12.77394 -12.68065 -12.50027 -12.03987 -11.98115 -11.86571 -11.69083 -11.52765 -11.12861 -11.07554 -10.75860 -9.91043 -8.65991 -8.48128 -6.59824 0.06822 0.38837 1.16980 1.19273 1.23361 1.30138 1.39737 2.14095 2.27997 2.46623 2.59674 2.84166 3.72103 3.89781 3.92024 3.96025 4.07307 4.18195 4.36809 4.44925 4.50324 4.59185 4.70103 4.81446 4.93419 5.05708 5.11738 5.31632 5.46809 5.92521 6.36367 6.46928 6.64941 7.04301 8.67622 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.005867 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.223266 B = 4771.506009 C = 5335.411556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.096 3.904 4 C -0.107 4.107 5 C -0.156 4.156 6 C 0.097 3.903 7 O -0.304 6.304 8 C 0.190 3.810 9 H 0.054 0.946 10 C -0.538 4.538 11 H 0.046 0.954 12 C 0.035 3.965 13 N -0.923 5.923 14 Si 0.918 3.082 15 H -0.249 1.249 16 H -0.235 1.235 17 H -0.278 1.278 18 C -0.050 4.050 19 Cl -0.195 7.195 20 C -0.052 4.052 21 Cl -0.063 7.063 22 C -0.160 4.160 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.124 0.876 26 H 0.155 0.845 27 H 0.143 0.857 28 H 0.277 0.723 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 -14.092 6.128 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.051 3.949 4 C -0.126 4.126 5 C -0.175 4.175 6 C 0.051 3.949 7 O -0.218 6.218 8 C 0.134 3.866 9 H 0.071 0.929 10 C -0.576 4.576 11 H 0.064 0.936 12 C -0.166 4.166 13 N -0.560 5.560 14 Si 0.741 3.259 15 H -0.174 1.174 16 H -0.158 1.158 17 H -0.204 1.204 18 C -0.113 4.113 19 Cl -0.169 7.169 20 C -0.080 4.080 21 Cl -0.034 7.034 22 C -0.179 4.179 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.142 0.858 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -10.021 -13.949 6.129 18.236 hybrid contribution 0.632 0.477 0.048 0.793 sum -9.389 -13.472 6.178 17.544 Atomic orbital electron populations 1.23384 0.76525 1.05798 1.02238 1.86075 1.23332 1.25269 1.89172 1.18670 0.91931 0.84318 1.00016 1.20476 0.91898 0.98056 1.02137 1.21294 1.00964 0.91025 1.04216 1.18993 0.91147 0.86153 0.98640 1.86194 1.22766 1.25842 1.86965 1.20593 0.76264 0.98666 0.91097 0.92866 1.20895 0.93480 1.13014 1.30195 0.93562 1.25634 0.99832 0.96488 0.94648 1.69948 1.18273 1.30420 1.37367 0.86297 0.79243 0.81167 0.79206 1.17413 1.15814 1.20448 1.25848 1.02253 0.89398 0.93772 1.98666 1.95647 1.47586 1.74962 1.20030 0.88444 0.88776 1.10709 1.98340 1.71452 1.36572 1.97075 1.21027 1.01490 0.88860 1.06537 0.91799 0.91850 0.85822 0.82706 0.83917 0.91297 0.89207 0.87895 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.32 -7.32 10.50 -93.32 -0.98 -8.30 16 3 C 0.10 2.57 6.69 22.49 0.15 2.72 16 4 C -0.11 -3.06 9.98 22.36 0.22 -2.83 16 5 C -0.16 -5.32 7.20 22.35 0.16 -5.16 16 6 C 0.10 3.73 6.21 22.50 0.14 3.86 16 7 O -0.30 -13.58 9.14 -93.60 -0.86 -14.44 16 8 C 0.19 8.61 1.74 29.85 0.05 8.66 16 9 H 0.05 2.35 4.54 -2.39 -0.01 2.34 16 10 C -0.54 -29.50 9.47 25.60 0.24 -29.26 16 11 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 12 C 0.04 1.90 5.45 84.65 0.46 2.36 16 13 N -0.92 -53.75 13.96 21.45 0.30 -53.45 16 14 Si 0.92 38.84 24.41 68.60 1.67 40.51 16 15 H -0.25 -9.77 6.83 99.48 0.68 -9.09 16 16 H -0.23 -9.04 6.53 99.48 0.65 -8.39 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 18 C -0.05 -2.00 5.83 71.98 0.42 -1.58 16 19 Cl -0.19 -6.77 25.67 -2.72 -0.07 -6.84 16 20 C -0.05 -1.76 6.33 22.40 0.14 -1.62 16 21 Cl -0.06 -2.10 28.50 -2.72 -0.08 -2.18 16 22 C -0.16 -4.34 8.82 22.38 0.20 -4.14 16 23 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 24 H 0.06 0.79 7.66 -2.38 -0.02 0.77 16 25 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 27 H 0.14 4.97 4.82 -2.91 -0.01 4.96 16 28 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.09 3.56 3.21 -2.39 -0.01 3.55 16 30 H 0.10 4.07 8.14 -2.38 -0.02 4.05 16 31 H 0.17 3.42 6.29 -2.91 -0.02 3.40 16 Total: -1.00 -61.69 285.06 4.38 -57.30 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.09 Total: 13.07 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 3.30 Total: -25.68 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.30 Total: -53.45 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.84 Total: -22.74 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.67 Total: 40.51 kcal Atomic # 17 Polarization: -8.88 SS G_CDS: -0.15 Total: -9.02 kcal Total: -61.69 4.38 -57.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225343687.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.255 kcal (2) G-P(sol) polarization free energy of solvation -61.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds