Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99919 * 2 1 4 4 H 1.48501 * 109.46835 * 274.05083 * 3 2 1 5 5 H 1.48499 * 109.47344 * 34.04947 * 3 2 1 6 6 H 1.48505 * 109.47566 * 154.05281 * 3 2 1 7 7 C 1.37873 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00340 * 350.52220 * 7 2 1 9 9 C 1.50700 * 119.99765 * 170.52436 * 7 2 1 10 10 H 1.09001 * 109.47476 * 354.86568 * 9 7 2 11 11 O 1.42908 * 109.47059 * 234.86723 * 9 7 2 12 12 C 1.35947 * 116.99759 * 88.16699 * 11 9 7 13 13 C 1.39071 * 120.83918 * 354.27618 * 12 11 9 14 14 N 1.32299 * 119.05044 * 179.69818 * 13 12 11 15 15 C 1.31902 * 120.86329 * 0.60999 * 14 13 12 16 16 Cl 1.73600 * 119.07957 * 179.68310 * 15 14 13 17 17 N 1.31912 * 121.84824 * 359.66029 * 15 14 13 18 18 C 1.32294 * 120.85871 * 0.02562 * 17 15 14 19 19 C 1.50700 * 109.47311 * 114.87013 * 9 7 2 20 20 C 1.38229 * 119.99890 * 261.62219 * 19 9 7 21 21 C 1.38238 * 120.00123 * 180.02562 * 20 19 9 22 22 C 1.38228 * 119.99919 * 359.95607 * 21 20 19 23 23 C 1.38239 * 120.00063 * 359.97438 * 22 21 20 24 24 C 1.38230 * 119.99993 * 81.60433 * 19 9 7 25 25 H 0.96995 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.47470 * 0.02562 * 13 12 11 27 27 H 1.08001 * 120.46940 * 180.02562 * 18 17 15 28 28 H 1.08006 * 120.00076 * 359.97438 * 20 19 9 29 29 H 1.08002 * 119.99903 * 179.97438 * 21 20 19 30 30 H 1.08003 * 120.00311 * 179.71991 * 22 21 20 31 31 H 1.07996 * 120.00205 * 179.97438 * 23 22 21 32 32 H 1.08002 * 120.00337 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4109 2.0958 -1.3966 5 1 1.4921 2.6264 0.7839 6 1 3.5870 1.4170 0.6126 7 6 2.0045 -1.1940 0.0005 8 1 1.4756 -2.1229 0.1550 9 6 3.4961 -1.2030 -0.2143 10 1 3.8366 -0.1928 -0.4415 11 8 3.8151 -2.0698 -1.3049 12 6 3.8100 -1.5230 -2.5496 13 6 3.3922 -0.2119 -2.7506 14 7 3.4074 0.2864 -3.9761 15 6 3.8000 -0.4467 -4.9999 16 17 3.7936 0.2514 -6.5893 17 7 4.1979 -1.6954 -4.8498 18 6 4.2169 -2.2626 -3.6548 19 6 4.1807 -1.6948 1.0349 20 6 4.7144 -0.7893 1.9327 21 6 5.3428 -1.2404 3.0783 22 6 5.4367 -2.5970 3.3266 23 6 4.9017 -3.5025 2.4295 24 6 4.2745 -3.0514 1.2832 25 1 -0.4850 0.8400 0.0004 26 1 3.0652 0.3926 -1.9175 27 1 4.5443 -3.2853 -3.5391 28 1 4.6411 0.2706 1.7386 29 1 5.7601 -0.5329 3.7795 30 1 5.9316 -2.9496 4.2194 31 1 4.9754 -4.5624 2.6233 32 1 3.8569 -3.7589 0.5821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225375210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = 38.154905 kcal Electronic energy + Delta-G solvation = -20128.766696 eV Core-core repulsion = 16888.193799 eV Total energy + Delta-G solvation = -3240.572897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91249 -39.05046 -37.67544 -36.51872 -33.74210 -33.27815 -31.73624 -30.47709 -29.95086 -27.74443 -24.60593 -23.99450 -22.88793 -22.09539 -20.54743 -18.23672 -17.79070 -17.36336 -17.16371 -16.21906 -15.38183 -14.97623 -14.64611 -14.28981 -14.01301 -13.80546 -13.38969 -13.16219 -13.11199 -12.95913 -12.30431 -11.94441 -11.55598 -11.33544 -11.31854 -11.23721 -11.03645 -10.73164 -10.69695 -10.27811 -10.06885 -9.79259 -9.08082 -8.98237 -8.46048 -8.26029 -7.98920 -6.61218 -4.66319 1.17748 1.19689 1.70563 1.83314 1.87812 2.89165 2.92209 3.03440 3.60193 3.88577 3.90287 4.30045 4.36279 4.61380 4.79741 4.94572 5.22749 5.32917 5.34464 5.48796 5.65618 5.78497 5.98631 6.02304 6.08526 6.32032 6.43609 6.52360 6.90371 6.92287 6.95459 6.97595 7.16120 7.46907 7.68485 7.98810 8.08454 8.53217 8.95194 10.49620 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.005659 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.255365 B = 4947.072273 C = 5901.546219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.088 3.912 3 Si 0.833 3.167 4 H -0.253 1.253 5 H -0.269 1.269 6 H -0.250 1.250 7 C -0.536 4.536 8 H 0.092 0.908 9 C 0.202 3.798 10 H 0.047 0.953 11 O -0.298 6.298 12 C 0.079 3.921 13 C 0.076 3.924 14 N -0.469 5.469 15 C 0.296 3.704 16 Cl 0.006 6.994 17 N -0.471 5.471 18 C 0.114 3.886 19 C -0.038 4.038 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.101 4.101 25 H 0.275 0.725 26 H 0.178 0.822 27 H 0.182 0.818 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 -1.785 -1.052 9.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.120 4.120 3 Si 0.659 3.341 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.573 4.573 8 H 0.110 0.890 9 C 0.149 3.851 10 H 0.064 0.936 11 O -0.208 6.208 12 C 0.026 3.974 13 C -0.091 4.091 14 N -0.186 5.186 15 C 0.003 3.997 16 Cl 0.033 6.967 17 N -0.188 5.188 18 C -0.054 4.054 19 C -0.039 4.039 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.119 4.119 25 H 0.086 0.914 26 H 0.194 0.806 27 H 0.199 0.801 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.367 -1.407 -1.999 9.680 hybrid contribution -0.029 0.911 0.906 1.285 sum 9.338 -0.496 -1.093 9.415 Atomic orbital electron populations 1.69847 1.06184 1.28129 1.44824 1.25064 0.94878 0.98750 0.93314 0.87649 0.81501 0.84751 0.80248 1.17838 1.19441 1.17505 1.21143 0.88273 0.96283 1.51568 0.89020 1.19624 0.96110 0.88993 0.80412 0.93562 1.86200 1.82068 1.41230 1.11322 1.20846 0.94027 0.93612 0.88942 1.23728 0.97225 0.93910 0.94207 1.67651 1.13692 1.38458 0.98826 1.22517 1.00588 0.87722 0.88870 1.98377 1.96956 1.82925 1.18442 1.67755 1.14941 1.10748 1.25348 1.22594 0.97912 1.00616 0.84291 1.19858 0.93888 0.93733 0.96373 1.21013 0.98787 0.99541 0.95049 1.20957 1.00194 0.95597 0.97166 1.20964 1.01880 0.93427 0.99565 1.21074 0.99209 0.99078 0.94804 1.20950 0.98544 0.95364 0.97029 0.91404 0.80572 0.80070 0.86352 0.86687 0.86899 0.86681 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 13.96 55.43 0.77 -22.78 16 2 C 0.09 2.26 5.30 -17.82 -0.09 2.17 16 3 Si 0.83 18.26 24.74 -169.99 -4.20 14.05 16 4 H -0.25 -5.48 6.55 56.52 0.37 -5.11 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.25 -5.00 4.81 56.52 0.27 -4.73 16 7 C -0.54 -13.50 8.84 -34.44 -0.30 -13.81 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.20 4.35 1.85 -29.03 -0.05 4.30 16 10 H 0.05 0.99 3.40 -51.93 -0.18 0.82 16 11 O -0.30 -6.05 9.06 -19.57 -0.18 -6.22 16 12 C 0.08 1.54 6.66 -38.96 -0.26 1.28 16 13 C 0.08 1.60 10.06 -17.04 -0.17 1.43 16 14 N -0.47 -9.65 10.40 -11.53 -0.12 -9.77 16 15 C 0.30 5.52 8.17 -91.96 -0.75 4.76 16 16 Cl 0.01 0.09 29.27 -51.86 -1.52 -1.43 16 17 N -0.47 -8.36 10.40 -11.53 -0.12 -8.48 16 18 C 0.11 1.91 11.27 -17.04 -0.19 1.72 16 19 C -0.04 -0.75 4.96 -104.63 -0.52 -1.27 16 20 C -0.13 -2.28 9.67 -39.58 -0.38 -2.67 16 21 C -0.12 -1.87 10.05 -39.58 -0.40 -2.27 16 22 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 23 C -0.12 -1.89 10.05 -39.58 -0.40 -2.28 16 24 C -0.10 -1.80 9.36 -39.58 -0.37 -2.17 16 25 H 0.28 7.07 8.31 -40.82 -0.34 6.74 16 26 H 0.18 3.90 1.93 -52.49 -0.10 3.80 16 27 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 28 H 0.12 2.11 6.25 -52.48 -0.33 1.78 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.11 1.30 8.06 -52.48 -0.42 0.87 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.12 2.17 7.73 -52.49 -0.41 1.76 16 LS Contribution 290.48 15.07 4.38 4.38 Total: -1.00 -27.23 290.48 -7.70 -34.94 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -2.42 Total: 6.56 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -4.29 Total: -11.23 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.53 Total: -41.04 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.18 Total: -6.22 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.20 Total: 14.05 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.52 Total: -1.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.23 -7.70 -34.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225375210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.092 kcal (2) G-P(sol) polarization free energy of solvation -27.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds