Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 119.99919 * 2 1 4 4 H 1.48501 * 109.46835 * 274.05083 * 3 2 1 5 5 H 1.48499 * 109.47344 * 34.04947 * 3 2 1 6 6 H 1.48505 * 109.47566 * 154.05281 * 3 2 1 7 7 C 1.37873 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00340 * 350.52220 * 7 2 1 9 9 C 1.50700 * 119.99765 * 170.52436 * 7 2 1 10 10 H 1.09001 * 109.47476 * 354.86568 * 9 7 2 11 11 O 1.42908 * 109.47059 * 234.86723 * 9 7 2 12 12 C 1.35947 * 116.99759 * 88.16699 * 11 9 7 13 13 C 1.39071 * 120.83918 * 354.27618 * 12 11 9 14 14 N 1.32299 * 119.05044 * 179.69818 * 13 12 11 15 15 C 1.31902 * 120.86329 * 0.60999 * 14 13 12 16 16 Cl 1.73600 * 119.07957 * 179.68310 * 15 14 13 17 17 N 1.31912 * 121.84824 * 359.66029 * 15 14 13 18 18 C 1.32294 * 120.85871 * 0.02562 * 17 15 14 19 19 C 1.50700 * 109.47311 * 114.87013 * 9 7 2 20 20 C 1.38229 * 119.99890 * 261.62219 * 19 9 7 21 21 C 1.38238 * 120.00123 * 180.02562 * 20 19 9 22 22 C 1.38228 * 119.99919 * 359.95607 * 21 20 19 23 23 C 1.38239 * 120.00063 * 359.97438 * 22 21 20 24 24 C 1.38230 * 119.99993 * 81.60433 * 19 9 7 25 25 H 0.96995 * 120.00233 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.47470 * 0.02562 * 13 12 11 27 27 H 1.08001 * 120.46940 * 180.02562 * 18 17 15 28 28 H 1.08006 * 120.00076 * 359.97438 * 20 19 9 29 29 H 1.08002 * 119.99903 * 179.97438 * 21 20 19 30 30 H 1.08003 * 120.00311 * 179.71991 * 22 21 20 31 31 H 1.07996 * 120.00205 * 179.97438 * 23 22 21 32 32 H 1.08002 * 120.00337 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4109 2.0958 -1.3966 5 1 1.4921 2.6264 0.7839 6 1 3.5870 1.4170 0.6126 7 6 2.0045 -1.1940 0.0005 8 1 1.4756 -2.1229 0.1550 9 6 3.4961 -1.2030 -0.2143 10 1 3.8366 -0.1928 -0.4415 11 8 3.8151 -2.0698 -1.3049 12 6 3.8100 -1.5230 -2.5496 13 6 3.3922 -0.2119 -2.7506 14 7 3.4074 0.2864 -3.9761 15 6 3.8000 -0.4467 -4.9999 16 17 3.7936 0.2514 -6.5893 17 7 4.1979 -1.6954 -4.8498 18 6 4.2169 -2.2626 -3.6548 19 6 4.1807 -1.6948 1.0349 20 6 4.7144 -0.7893 1.9327 21 6 5.3428 -1.2404 3.0783 22 6 5.4367 -2.5970 3.3266 23 6 4.9017 -3.5025 2.4295 24 6 4.2745 -3.0514 1.2832 25 1 -0.4850 0.8400 0.0004 26 1 3.0652 0.3926 -1.9175 27 1 4.5443 -3.2853 -3.5391 28 1 4.6411 0.2706 1.7386 29 1 5.7601 -0.5329 3.7795 30 1 5.9316 -2.9496 4.2194 31 1 4.9754 -4.5624 2.6233 32 1 3.8569 -3.7589 0.5821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225375210.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = 21.941349 kcal Electronic energy + Delta-G solvation = -20129.469769 eV Core-core repulsion = 16888.193799 eV Total energy + Delta-G solvation = -3241.275969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41829 -40.46408 -39.10841 -37.88215 -35.37608 -34.97247 -33.28506 -31.77009 -31.39673 -29.38993 -26.18372 -25.54737 -24.41658 -23.37928 -21.97684 -19.89866 -19.33152 -19.05180 -18.66817 -17.51617 -17.00124 -16.52341 -16.05555 -15.68471 -15.54530 -15.21401 -14.98850 -14.92557 -14.57513 -14.24430 -13.66546 -13.50354 -13.03355 -12.84182 -12.76450 -12.65823 -12.54262 -12.21203 -12.12641 -11.89933 -11.69712 -11.44844 -10.96244 -10.49655 -9.72670 -9.66907 -9.47292 -8.57805 -6.66939 -0.35633 -0.27176 0.30047 0.53722 0.60956 1.14533 1.16383 1.24645 2.04627 2.05325 2.40214 2.82199 2.88084 3.03524 3.18534 3.49219 3.71786 3.92747 4.15275 4.22256 4.30327 4.39974 4.61464 4.70566 4.79476 4.87681 5.07245 5.19755 5.25894 5.46480 5.65972 5.69817 5.79793 5.88969 6.18705 6.25561 6.48234 6.59123 6.99494 8.57276 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.005659 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.255365 B = 4947.072273 C = 5901.546219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.043 3.957 3 Si 0.881 3.119 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.222 1.222 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.212 3.788 10 H 0.047 0.953 11 O -0.297 6.297 12 C 0.060 3.940 13 C 0.054 3.946 14 N -0.490 5.490 15 C 0.291 3.709 16 Cl 0.033 6.967 17 N -0.469 5.469 18 C 0.139 3.861 19 C -0.071 4.071 20 C -0.144 4.144 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.118 4.118 25 H 0.276 0.724 26 H 0.163 0.837 27 H 0.224 0.776 28 H 0.116 0.884 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.146 0.854 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.264 -2.366 -0.401 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.177 1.177 5 H -0.193 1.193 6 H -0.145 1.145 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.157 3.843 10 H 0.065 0.935 11 O -0.207 6.207 12 C 0.007 3.993 13 C -0.111 4.111 14 N -0.207 5.207 15 C -0.001 4.001 16 Cl 0.061 6.939 17 N -0.186 5.186 18 C -0.030 4.030 19 C -0.072 4.072 20 C -0.162 4.162 21 C -0.137 4.137 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.136 4.136 25 H 0.086 0.914 26 H 0.180 0.820 27 H 0.240 0.760 28 H 0.133 0.867 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.124 -1.984 -1.347 12.359 hybrid contribution -0.808 0.939 0.629 1.390 sum 11.316 -1.045 -0.717 11.387 Atomic orbital electron populations 1.69978 1.07975 1.28968 1.47699 1.25749 0.95381 1.02048 0.92854 0.86855 0.81748 0.80552 0.80468 1.17746 1.19300 1.14460 1.21187 0.90563 0.94522 1.51174 0.93440 1.19417 0.93857 0.89479 0.81499 0.93537 1.86143 1.82373 1.40683 1.11550 1.21085 0.95256 0.93642 0.89317 1.23599 0.98459 0.94701 0.94336 1.67639 1.14782 1.39223 0.99058 1.22943 0.99508 0.88031 0.89652 1.98385 1.96742 1.82619 1.16187 1.67950 1.14994 1.10282 1.25342 1.23263 0.95107 1.01653 0.82955 1.19857 0.96187 0.95064 0.96062 1.21162 0.99757 0.99236 0.96068 1.21360 0.98937 0.96976 0.96427 1.21466 1.00283 0.92814 1.00208 1.21444 0.97787 1.01066 0.93589 1.21037 0.99572 0.94615 0.98406 0.91438 0.82038 0.75964 0.86656 0.83456 0.82898 0.83598 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.76 13.96 21.45 0.30 -52.46 16 2 C 0.04 2.30 5.30 84.65 0.45 2.75 16 3 Si 0.88 38.54 24.74 68.60 1.70 40.23 16 4 H -0.25 -10.91 6.55 99.48 0.65 -10.25 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 6 H -0.22 -8.53 4.81 99.48 0.48 -8.05 16 7 C -0.54 -28.41 8.84 25.60 0.23 -28.19 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 9 C 0.21 9.30 1.85 29.10 0.05 9.35 16 10 H 0.05 2.02 3.40 -2.39 -0.01 2.01 16 11 O -0.30 -12.19 9.06 -92.95 -0.84 -13.04 16 12 C 0.06 2.32 6.66 22.67 0.15 2.47 16 13 C 0.05 2.30 10.06 84.82 0.85 3.16 16 14 N -0.49 -20.05 10.40 -190.39 -1.98 -22.03 16 15 C 0.29 10.53 8.17 180.82 1.48 12.01 16 16 Cl 0.03 0.98 29.27 -2.72 -0.08 0.90 16 17 N -0.47 -15.76 10.40 -190.39 -1.98 -17.74 16 18 C 0.14 4.42 11.27 84.82 0.96 5.38 16 19 C -0.07 -2.80 4.96 -19.87 -0.10 -2.90 16 20 C -0.14 -5.03 9.67 22.27 0.22 -4.82 16 21 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 22 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 23 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 24 C -0.12 -4.16 9.36 22.27 0.21 -3.95 16 25 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.16 7.30 1.93 -2.91 -0.01 7.29 16 27 H 0.22 5.08 8.06 -2.91 -0.02 5.06 16 28 H 0.12 3.97 6.25 -2.91 -0.02 3.95 16 29 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.12 4.11 7.73 -2.91 -0.02 4.08 16 Total: -1.00 -62.31 290.48 3.17 -59.14 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.90 Total: 18.89 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 5.16 Total: -13.90 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.66 Total: -92.22 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.84 Total: -13.04 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.70 Total: 40.23 kcal Atomic # 17 Polarization: 0.98 SS G_CDS: -0.08 Total: 0.90 kcal Total: -62.31 3.17 -59.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225375210.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.081 kcal (2) G-P(sol) polarization free energy of solvation -62.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds