Wall clock time and date at job start Tue Mar 31 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36120 * 116.99839 * 2 1 4 4 C 1.38569 * 120.78418 * 359.97438 * 3 2 1 5 5 N 1.32503 * 119.21064 * 180.02562 * 4 3 2 6 6 C 1.32452 * 120.92034 * 359.97438 * 5 4 3 7 7 S 1.76193 * 119.14609 * 180.02562 * 6 5 4 8 8 N 1.32515 * 121.71543 * 0.02562 * 6 5 4 9 9 C 1.32703 * 120.69205 * 359.70670 * 8 6 5 10 10 O 1.35595 * 120.48670 * 180.28727 * 9 8 6 11 11 C 1.42905 * 117.00132 * 0.28393 * 10 9 8 12 12 H 1.08997 * 109.46840 * 29.99562 * 11 10 9 13 13 C 1.50694 * 109.47201 * 150.00084 * 11 10 9 14 14 H 1.08000 * 120.00322 * 359.97438 * 13 11 10 15 15 C 1.37881 * 119.99717 * 180.02562 * 13 11 10 16 16 N 1.31509 * 119.99981 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99833 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47482 * 89.99403 * 17 15 13 19 19 H 1.48497 * 109.47038 * 209.99422 * 17 15 13 20 20 H 1.48500 * 109.47432 * 329.99200 * 17 15 13 21 21 C 1.52999 * 109.46596 * 269.99959 * 11 10 9 22 22 Cl 1.80298 * 109.47409 * 64.99942 * 21 11 10 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00157 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00205 * 1 2 3 26 26 H 1.08000 * 120.39450 * 0.02562 * 4 3 2 27 27 H 1.41007 * 99.99770 * 89.99815 * 7 6 5 28 28 H 0.96999 * 120.00312 * 180.02562 * 16 15 13 29 29 H 1.09003 * 109.47186 * 184.99928 * 21 11 10 30 30 H 1.08998 * 109.47558 * 304.99533 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0470 1.2129 0.0000 4 6 1.3082 2.3852 -0.0005 5 7 1.9419 3.5489 -0.0010 6 6 3.2654 3.6031 -0.0005 7 16 4.0597 5.1758 -0.0005 8 7 4.0076 2.5053 0.0000 9 6 3.4417 1.3051 0.0059 10 8 4.2052 0.1845 0.0122 11 6 5.6227 0.3654 0.0186 12 1 5.8680 1.2954 0.5313 13 6 6.2733 -0.7899 0.7349 14 1 5.6651 -1.5827 1.1447 15 6 7.6450 -0.8342 0.8679 16 7 8.3855 0.1315 0.3693 17 14 8.4514 -2.2658 1.7564 18 1 8.7599 -3.3429 0.7818 19 1 9.7083 -1.8048 2.3990 20 1 7.5271 -2.7878 2.7950 21 6 6.1354 0.4264 -1.4217 22 17 5.4711 1.8922 -2.2345 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2288 2.3508 -0.0005 27 1 4.1695 5.3946 1.3881 28 1 9.3504 0.1002 0.4626 29 1 7.2243 0.4750 -1.4180 30 1 5.8134 -0.4650 -1.9601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226242644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:49 Heat of formation + Delta-G solvation = -25.086529 kcal Electronic energy + Delta-G solvation = -19069.366145 eV Core-core repulsion = 15825.661751 eV Total energy + Delta-G solvation = -3243.704394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.99174 -38.37139 -37.83962 -34.73766 -33.58427 -32.71453 -30.77421 -29.16494 -27.65402 -25.32671 -23.97910 -23.80791 -21.19047 -18.77167 -18.04650 -17.98567 -16.67479 -16.56516 -16.16850 -15.29088 -14.82158 -14.69728 -14.07851 -14.01985 -13.58923 -13.27284 -12.92675 -12.24687 -11.98723 -11.88385 -11.65350 -11.18932 -11.18010 -11.07582 -10.80433 -10.61519 -10.36515 -10.20295 -9.59089 -9.34444 -9.04509 -8.86658 -8.63845 -7.98392 -7.89920 -6.40595 -4.49700 0.87138 1.40582 1.56127 2.64048 3.13645 3.15708 3.20962 3.24604 3.51599 3.64033 3.97663 4.20137 4.31996 4.66741 4.93376 4.97506 5.06793 5.12786 5.26561 5.41775 6.01286 6.27168 6.34723 6.82134 6.98311 7.18078 7.25600 7.51877 7.75626 8.07291 8.18354 8.62854 9.16994 10.66128 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.006467 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.728291 B = 4328.955218 C = 5261.006941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.290 6.290 3 C 0.018 3.982 4 C 0.068 3.932 5 N -0.481 5.481 6 C 0.293 3.707 7 S -0.044 6.044 8 N -0.468 5.468 9 C 0.364 3.636 10 O -0.282 6.282 11 C 0.210 3.790 12 H 0.068 0.932 13 C -0.527 4.527 14 H 0.075 0.925 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.916 3.084 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.270 1.270 21 C -0.033 4.033 22 Cl -0.230 7.230 23 H 0.103 0.897 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.173 0.827 27 H 0.102 0.898 28 H 0.272 0.728 29 H 0.134 0.866 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 3.245 -0.563 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.201 6.201 3 C -0.034 4.034 4 C -0.097 4.097 5 N -0.204 5.204 6 C -0.085 4.085 7 S 0.109 5.891 8 N -0.201 5.201 9 C 0.170 3.830 10 O -0.184 6.184 11 C 0.155 3.845 12 H 0.086 0.914 13 C -0.565 4.565 14 H 0.094 0.906 15 C -0.138 4.138 16 N -0.520 5.520 17 Si 0.743 3.257 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.195 1.195 21 C -0.096 4.096 22 Cl -0.204 7.204 23 H 0.122 0.878 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.190 0.810 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.562 4.512 -0.882 11.519 hybrid contribution -0.424 -2.098 1.181 2.445 sum -10.986 2.414 0.299 11.252 Atomic orbital electron populations 1.23138 0.78669 1.04397 1.01177 1.86308 1.20836 1.24449 1.88473 1.19988 0.91292 0.87403 1.04742 1.23105 1.00639 0.86226 0.99768 1.68789 1.09663 1.27572 1.14355 1.23589 0.88046 0.95930 1.00921 1.86761 1.77067 1.13207 1.12035 1.69127 1.38899 0.96719 1.15350 1.19817 0.86605 0.87019 0.89532 1.86415 1.23306 1.24763 1.83903 1.20648 0.70923 1.00788 0.92137 0.91384 1.20989 0.91683 1.07232 1.36575 0.90639 1.24955 0.96635 0.96911 0.95295 1.69823 1.06418 1.31642 1.44073 0.86184 0.78661 0.81190 0.79711 1.20107 1.20719 1.19469 1.25582 1.04596 0.84665 0.94755 1.98647 1.89051 1.49237 1.83482 0.87832 0.92624 0.92559 0.80993 0.93391 0.91771 0.84794 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.84 101.05 0.99 1.20 16 2 O -0.29 -4.64 10.36 -32.95 -0.34 -4.98 16 3 C 0.02 0.31 6.74 -38.89 -0.26 0.05 16 4 C 0.07 1.02 10.30 -17.14 -0.18 0.84 16 5 N -0.48 -8.19 10.39 -13.44 -0.14 -8.33 16 6 C 0.29 5.49 7.91 -90.97 -0.72 4.77 16 7 S -0.04 -0.70 26.15 -107.50 -2.81 -3.52 16 8 N -0.47 -9.87 6.49 -13.42 -0.09 -9.96 16 9 C 0.36 7.74 6.69 -16.60 -0.11 7.63 16 10 O -0.28 -6.71 9.58 -31.31 -0.30 -7.01 16 11 C 0.21 5.28 2.26 -27.89 -0.06 5.21 16 12 H 0.07 1.86 7.02 -51.93 -0.36 1.50 16 13 C -0.53 -13.94 8.89 -34.44 -0.31 -14.24 16 14 H 0.08 2.00 7.81 -52.49 -0.41 1.59 16 15 C 0.07 1.70 5.29 -17.82 -0.09 1.60 16 16 N -0.88 -23.37 11.29 55.43 0.63 -22.74 16 17 Si 0.92 20.02 29.54 -169.99 -5.02 15.00 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 C -0.03 -0.79 6.17 37.16 0.23 -0.56 16 22 Cl -0.23 -5.08 25.91 -51.86 -1.34 -6.42 16 23 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 25 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 26 H 0.17 1.81 6.44 -52.49 -0.34 1.47 16 27 H 0.10 1.41 9.55 96.90 0.93 2.34 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.13 3.39 5.95 -51.93 -0.31 3.08 16 30 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -28.89 291.91 -6.80 -35.69 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -1.28 Total: 1.36 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: -0.51 Total: 6.50 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.40 Total: -41.04 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.64 Total: -11.99 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -2.81 Total: -3.52 kcal Atomic # 17 Polarization: -5.08 SS G_CDS: -1.34 Total: -6.42 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.89 -6.80 -35.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226242644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.605 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds