Wall clock time and date at job start Tue Mar 31 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36120 * 116.99839 * 2 1 4 4 C 1.38569 * 120.78418 * 359.97438 * 3 2 1 5 5 N 1.32503 * 119.21064 * 180.02562 * 4 3 2 6 6 C 1.32452 * 120.92034 * 359.97438 * 5 4 3 7 7 S 1.76193 * 119.14609 * 180.02562 * 6 5 4 8 8 N 1.32515 * 121.71543 * 0.02562 * 6 5 4 9 9 C 1.32703 * 120.69205 * 359.70670 * 8 6 5 10 10 O 1.35595 * 120.48670 * 180.28727 * 9 8 6 11 11 C 1.42905 * 117.00132 * 0.28393 * 10 9 8 12 12 H 1.08997 * 109.46840 * 29.99562 * 11 10 9 13 13 C 1.50694 * 109.47201 * 150.00084 * 11 10 9 14 14 H 1.08000 * 120.00322 * 359.97438 * 13 11 10 15 15 C 1.37881 * 119.99717 * 180.02562 * 13 11 10 16 16 N 1.31509 * 119.99981 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99833 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47482 * 89.99403 * 17 15 13 19 19 H 1.48497 * 109.47038 * 209.99422 * 17 15 13 20 20 H 1.48500 * 109.47432 * 329.99200 * 17 15 13 21 21 C 1.52999 * 109.46596 * 269.99959 * 11 10 9 22 22 Cl 1.80298 * 109.47409 * 64.99942 * 21 11 10 23 23 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47187 * 300.00157 * 1 2 3 25 25 H 1.09001 * 109.46558 * 60.00205 * 1 2 3 26 26 H 1.08000 * 120.39450 * 0.02562 * 4 3 2 27 27 H 1.41007 * 99.99770 * 89.99815 * 7 6 5 28 28 H 0.96999 * 120.00312 * 180.02562 * 16 15 13 29 29 H 1.09003 * 109.47186 * 184.99928 * 21 11 10 30 30 H 1.08998 * 109.47558 * 304.99533 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0470 1.2129 0.0000 4 6 1.3082 2.3852 -0.0005 5 7 1.9419 3.5489 -0.0010 6 6 3.2654 3.6031 -0.0005 7 16 4.0597 5.1758 -0.0005 8 7 4.0076 2.5053 0.0000 9 6 3.4417 1.3051 0.0059 10 8 4.2052 0.1845 0.0122 11 6 5.6227 0.3654 0.0186 12 1 5.8680 1.2954 0.5313 13 6 6.2733 -0.7899 0.7349 14 1 5.6651 -1.5827 1.1447 15 6 7.6450 -0.8342 0.8679 16 7 8.3855 0.1315 0.3693 17 14 8.4514 -2.2658 1.7564 18 1 8.7599 -3.3429 0.7818 19 1 9.7083 -1.8048 2.3990 20 1 7.5271 -2.7878 2.7950 21 6 6.1354 0.4264 -1.4217 22 17 5.4711 1.8922 -2.2345 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 0.2288 2.3508 -0.0005 27 1 4.1695 5.3946 1.3881 28 1 9.3504 0.1002 0.4626 29 1 7.2243 0.4750 -1.4180 30 1 5.8134 -0.4650 -1.9601 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226242644.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:48 Heat of formation + Delta-G solvation = -44.356711 kcal Electronic energy + Delta-G solvation = -19070.201763 eV Core-core repulsion = 15825.661751 eV Total energy + Delta-G solvation = -3244.540012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.37140 -39.73689 -39.32840 -36.56007 -35.46749 -34.20353 -32.24083 -30.92393 -28.57681 -27.30062 -25.43465 -25.12862 -22.95818 -20.23572 -19.56518 -19.15368 -18.43179 -18.09716 -17.53237 -16.78378 -16.39377 -16.05212 -15.49777 -15.36011 -15.11134 -14.73307 -14.60205 -13.86962 -13.71212 -13.22965 -13.03091 -12.91799 -12.69844 -12.49753 -12.34942 -12.17554 -11.88685 -11.78558 -11.43364 -11.16210 -10.69606 -10.61233 -10.32839 -9.33746 -9.23003 -8.36654 -6.54496 -0.46570 0.01994 0.24419 1.40295 1.42148 1.43068 1.53817 1.65690 1.93379 2.19412 2.42963 2.58793 2.96604 3.01318 3.38823 3.74702 3.77587 4.35194 4.38916 4.42234 4.43099 4.75734 4.78910 4.95459 5.25837 5.48591 5.62702 5.82524 6.01963 6.35643 6.61524 6.78955 7.16950 8.70054 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.006467 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.728291 B = 4328.955218 C = 5261.006941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.314 6.314 3 C 0.026 3.974 4 C 0.086 3.914 5 N -0.475 5.475 6 C 0.273 3.727 7 S -0.045 6.045 8 N -0.492 5.492 9 C 0.322 3.678 10 O -0.301 6.301 11 C 0.221 3.779 12 H 0.038 0.962 13 C -0.553 4.553 14 H 0.067 0.933 15 C 0.028 3.972 16 N -0.906 5.906 17 Si 0.980 3.020 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.269 1.269 21 C -0.023 4.023 22 Cl -0.215 7.215 23 H 0.123 0.877 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.225 0.775 27 H 0.123 0.877 28 H 0.276 0.724 29 H 0.117 0.883 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 3.097 -0.312 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.226 6.226 3 C -0.027 4.027 4 C -0.080 4.080 5 N -0.197 5.197 6 C -0.105 4.105 7 S 0.107 5.893 8 N -0.225 5.225 9 C 0.129 3.871 10 O -0.205 6.205 11 C 0.165 3.835 12 H 0.055 0.945 13 C -0.591 4.591 14 H 0.085 0.915 15 C -0.174 4.174 16 N -0.543 5.543 17 Si 0.803 3.197 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.194 1.194 21 C -0.086 4.086 22 Cl -0.189 7.189 23 H 0.141 0.859 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.241 0.759 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.346 4.391 -0.640 13.119 hybrid contribution -0.079 -1.980 1.106 2.269 sum -12.425 2.411 0.466 12.665 Atomic orbital electron populations 1.23612 0.75180 1.06588 1.03274 1.86290 1.24400 1.23839 1.88035 1.20031 0.90083 0.88948 1.03595 1.23892 1.02543 0.84506 0.97100 1.68878 1.08871 1.28371 1.13549 1.23952 0.88825 0.96057 1.01621 1.86658 1.77219 1.11521 1.13874 1.69022 1.40283 0.97377 1.15802 1.20165 0.87979 0.86551 0.92369 1.86338 1.22365 1.26511 1.85301 1.20248 0.72227 0.98816 0.92177 0.94461 1.21216 0.92442 1.07690 1.37723 0.91493 1.25748 0.96800 0.99236 0.95627 1.69919 1.06776 1.33035 1.44532 0.85217 0.77627 0.78215 0.78651 1.19114 1.20039 1.19352 1.25270 1.03399 0.85423 0.94554 1.98638 1.88839 1.48336 1.83060 0.85878 0.90363 0.90391 0.75880 0.91320 0.91415 0.86491 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.31 -9.51 10.36 -82.65 -0.86 -10.36 16 3 C 0.03 0.87 6.74 22.72 0.15 1.02 16 4 C 0.09 2.32 10.30 84.67 0.87 3.19 16 5 N -0.48 -15.19 10.39 -196.42 -2.04 -17.23 16 6 C 0.27 10.04 7.91 180.47 1.43 11.47 16 7 S -0.05 -1.43 26.15 -56.49 -1.48 -2.91 16 8 N -0.49 -21.04 6.49 -309.06 -2.01 -23.05 16 9 C 0.32 13.84 6.69 84.93 0.57 14.41 16 10 O -0.30 -14.82 9.58 -76.78 -0.74 -15.56 16 11 C 0.22 11.52 2.26 29.85 0.07 11.59 16 12 H 0.04 2.15 7.02 -2.39 -0.02 2.13 16 13 C -0.55 -30.13 8.89 25.60 0.23 -29.90 16 14 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 15 C 0.03 1.44 5.29 84.66 0.45 1.88 16 16 N -0.91 -48.81 11.29 21.45 0.24 -48.57 16 17 Si 0.98 41.11 29.54 68.60 2.03 43.14 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 19 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 C -0.02 -1.14 6.17 71.98 0.44 -0.70 16 22 Cl -0.21 -9.61 25.91 -2.72 -0.07 -9.68 16 23 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.08 0.89 7.71 -2.39 -0.02 0.87 16 25 H 0.08 0.90 7.71 -2.39 -0.02 0.88 16 26 H 0.23 3.53 6.44 -2.91 -0.02 3.51 16 27 H 0.12 3.26 9.55 73.80 0.70 3.97 16 28 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.12 6.12 5.95 -2.39 -0.01 6.11 16 30 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -64.21 291.91 2.31 -61.90 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.91 Total: 8.13 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 5.32 Total: 14.19 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -3.81 Total: -88.85 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.59 Total: -25.92 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -1.48 Total: -2.91 kcal Atomic # 17 Polarization: -9.61 SS G_CDS: -0.07 Total: -9.68 kcal Total: -64.21 2.31 -61.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226242644.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.542 kcal (2) G-P(sol) polarization free energy of solvation -64.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds