Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00437 * 2 1 4 4 H 1.48502 * 109.47040 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47201 * 119.99934 * 3 2 1 6 6 H 1.48496 * 109.47420 * 239.99936 * 3 2 1 7 7 C 1.37880 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99782 * 183.27373 * 7 2 1 9 9 C 1.50702 * 119.99982 * 3.27094 * 7 2 1 10 10 H 1.08997 * 109.46762 * 332.12148 * 9 7 2 11 11 O 1.42898 * 109.46893 * 212.12311 * 9 7 2 12 12 C 1.35715 * 117.00333 * 90.00597 * 11 9 7 13 13 C 1.39282 * 120.12286 * 179.97438 * 12 11 9 14 14 C 1.38610 * 117.92781 * 179.97438 * 13 12 11 15 15 C 1.38901 * 118.00403 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 120.02752 * 179.97438 * 15 14 13 17 17 N 1.31899 * 119.94494 * 359.97438 * 15 14 13 18 18 N 1.28345 * 122.24332 * 359.71303 * 17 15 14 19 19 C 1.50699 * 109.47058 * 92.11920 * 9 7 2 20 20 C 1.38243 * 119.99600 * 82.45778 * 19 9 7 21 21 C 1.38233 * 119.99382 * 179.80782 * 20 19 9 22 22 C 1.38233 * 120.00320 * 0.39947 * 21 20 19 23 23 C 1.38242 * 120.00072 * 359.85688 * 22 21 20 24 24 C 1.38232 * 120.00114 * 262.73359 * 19 9 7 25 25 H 0.96992 * 120.00417 * 174.79886 * 1 2 3 26 26 H 1.07994 * 121.04117 * 359.97024 * 13 12 11 27 27 H 1.07996 * 120.99069 * 179.97438 * 14 13 12 28 28 H 1.07992 * 120.00157 * 0.02562 * 20 19 9 29 29 H 1.08003 * 119.99751 * 180.23201 * 21 20 19 30 30 H 1.07998 * 120.00216 * 179.82931 * 22 21 20 31 31 H 1.07998 * 119.99829 * 179.97438 * 23 22 21 32 32 H 1.07999 * 119.99920 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0831 -1.1949 0.0529 9 6 1.2528 -2.4981 -0.0756 10 1 0.2618 -2.3718 0.3604 11 8 1.9672 -3.5020 0.6482 12 6 1.6681 -3.6429 1.9645 13 6 2.3250 -4.6019 2.7318 14 6 1.9844 -4.7063 4.0713 15 6 1.0103 -3.8482 4.5654 16 17 0.5430 -3.9339 6.2351 17 7 0.4407 -2.9681 3.7649 18 7 0.7574 -2.8643 2.5254 19 6 1.1179 -2.9179 -1.5166 20 6 2.1583 -3.5765 -2.1449 21 6 2.0330 -3.9651 -3.4656 22 6 0.8705 -3.6878 -4.1604 23 6 -0.1678 -3.0245 -3.5336 24 6 -0.0440 -2.6394 -2.2118 25 1 -0.4850 -0.8365 -0.0761 26 1 3.0761 -5.2443 2.2966 27 1 2.4622 -5.4330 4.7116 28 1 3.0676 -3.7905 -1.6030 29 1 2.8444 -4.4830 -3.9554 30 1 0.7737 -3.9890 -5.1930 31 1 -1.0758 -2.8075 -4.0766 32 1 -0.8553 -2.1212 -1.7221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226459683.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = 40.850372 kcal Electronic energy + Delta-G solvation = -20005.899711 eV Core-core repulsion = 16765.443699 eV Total energy + Delta-G solvation = -3240.456012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83510 -38.86407 -37.51408 -36.57389 -33.67031 -32.93507 -31.29624 -30.34873 -30.20324 -26.69185 -24.60734 -23.90661 -23.06688 -21.86663 -20.65290 -18.28496 -17.48727 -17.14693 -16.80224 -16.06499 -15.36696 -14.64599 -14.40828 -13.96436 -13.86876 -13.78142 -13.41842 -13.30367 -12.78732 -12.44555 -12.17915 -11.89737 -11.44190 -11.33629 -11.25213 -10.92446 -10.75886 -10.48808 -10.27034 -10.11500 -10.07245 -9.26179 -9.15747 -8.63562 -8.39849 -8.29146 -7.85048 -6.58127 -4.35451 0.92563 1.18733 1.81515 2.02680 2.04307 3.35944 3.37513 3.54168 3.57677 3.77747 4.35879 4.41546 4.53719 4.68394 4.95411 4.97868 5.16128 5.46649 5.49836 5.52507 5.64994 5.85939 5.90830 6.10247 6.17232 6.29363 6.54774 6.66697 6.73641 7.07696 7.12185 7.32906 7.60696 7.70451 7.74623 8.28247 8.57954 8.94348 9.36128 10.77762 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.005499 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.577861 B = 5090.773352 C = 6308.910650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.039 3.961 3 Si 1.069 2.931 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.606 4.606 8 H 0.060 0.940 9 C 0.221 3.779 10 H 0.072 0.928 11 O -0.298 6.298 12 C 0.296 3.704 13 C -0.138 4.138 14 C -0.079 4.079 15 C 0.058 3.942 16 Cl -0.027 7.027 17 N -0.188 5.188 18 N -0.254 5.254 19 C -0.041 4.041 20 C -0.109 4.109 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.121 4.121 24 C -0.114 4.114 25 H 0.273 0.727 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -10.247 2.850 11.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.170 4.170 3 Si 0.896 3.104 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.643 4.643 8 H 0.078 0.922 9 C 0.168 3.832 10 H 0.089 0.911 11 O -0.201 6.201 12 C 0.111 3.889 13 C -0.169 4.169 14 C -0.107 4.107 15 C -0.116 4.116 16 Cl 0.001 6.999 17 N -0.034 5.034 18 N -0.113 5.113 19 C -0.042 4.042 20 C -0.127 4.127 21 C -0.146 4.146 22 C -0.164 4.164 23 C -0.139 4.139 24 C -0.133 4.133 25 H 0.085 0.915 26 H 0.177 0.823 27 H 0.175 0.825 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.114 -7.524 2.598 8.236 hybrid contribution 1.216 -2.563 0.183 2.843 sum 3.330 -10.087 2.781 10.980 Atomic orbital electron populations 1.70800 1.06749 1.31245 1.42418 1.25864 0.96326 1.02566 0.92234 0.83538 0.75085 0.75015 0.76751 1.20287 1.21218 1.21105 1.21984 0.94949 0.90161 1.57197 0.92190 1.19423 0.95050 0.84672 0.84102 0.91087 1.86202 1.61897 1.57238 1.14751 1.21573 0.89896 0.89567 0.87899 1.21579 1.02327 1.00142 0.92806 1.21917 0.95437 0.98278 0.95111 1.23218 0.99273 0.99174 0.89932 1.98373 1.91998 1.97458 1.12064 1.72786 1.18832 1.14064 0.97767 1.73489 1.14902 1.20462 1.02427 1.20269 0.92838 0.93785 0.97273 1.20884 0.98691 0.98810 0.94311 1.21006 0.97533 1.01248 0.94796 1.20906 0.94501 1.01746 0.99246 1.20972 0.98653 0.99466 0.94859 1.20932 0.97569 1.00081 0.94674 0.91463 0.82338 0.82501 0.86524 0.87060 0.87142 0.86831 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.06 13.62 55.43 0.75 -24.31 16 2 C 0.04 1.06 5.46 -17.82 -0.10 0.96 16 3 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.61 -16.33 8.63 -34.44 -0.30 -16.63 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.22 5.41 1.99 -29.03 -0.06 5.35 16 10 H 0.07 1.87 5.12 -51.93 -0.27 1.61 16 11 O -0.30 -6.62 9.00 -18.85 -0.17 -6.79 16 12 C 0.30 6.04 7.53 -16.96 -0.13 5.92 16 13 C -0.14 -2.09 10.16 -39.06 -0.40 -2.49 16 14 C -0.08 -1.05 10.00 -39.20 -0.39 -1.44 16 15 C 0.06 0.93 7.36 -17.28 -0.13 0.80 16 16 Cl -0.03 -0.36 29.13 -51.86 -1.51 -1.87 16 17 N -0.19 -3.86 11.48 32.89 0.38 -3.48 16 18 N -0.25 -5.75 9.84 30.50 0.30 -5.45 16 19 C -0.04 -0.92 4.97 -104.62 -0.52 -1.44 16 20 C -0.11 -2.18 9.36 -39.58 -0.37 -2.55 16 21 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 22 C -0.15 -2.42 10.05 -39.58 -0.40 -2.81 16 23 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 24 C -0.11 -2.41 9.59 -39.59 -0.38 -2.79 16 25 H 0.27 7.70 5.42 -40.82 -0.22 7.48 16 26 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.12 2.27 7.70 -52.49 -0.40 1.86 16 29 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.12 2.60 7.03 -52.49 -0.37 2.23 16 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -30.29 302.85 -7.31 -37.60 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -2.58 Total: 2.36 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -3.96 Total: -22.29 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 1.43 Total: -33.25 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.17 Total: -6.79 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.29 -7.31 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226459683.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.448 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds