Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00437 * 2 1 4 4 H 1.48502 * 109.47040 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47201 * 119.99934 * 3 2 1 6 6 H 1.48496 * 109.47420 * 239.99936 * 3 2 1 7 7 C 1.37880 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99782 * 183.27373 * 7 2 1 9 9 C 1.50702 * 119.99982 * 3.27094 * 7 2 1 10 10 H 1.08997 * 109.46762 * 332.12148 * 9 7 2 11 11 O 1.42898 * 109.46893 * 212.12311 * 9 7 2 12 12 C 1.35715 * 117.00333 * 90.00597 * 11 9 7 13 13 C 1.39282 * 120.12286 * 179.97438 * 12 11 9 14 14 C 1.38610 * 117.92781 * 179.97438 * 13 12 11 15 15 C 1.38901 * 118.00403 * 359.97438 * 14 13 12 16 16 Cl 1.73599 * 120.02752 * 179.97438 * 15 14 13 17 17 N 1.31899 * 119.94494 * 359.97438 * 15 14 13 18 18 N 1.28345 * 122.24332 * 359.71303 * 17 15 14 19 19 C 1.50699 * 109.47058 * 92.11920 * 9 7 2 20 20 C 1.38243 * 119.99600 * 82.45778 * 19 9 7 21 21 C 1.38233 * 119.99382 * 179.80782 * 20 19 9 22 22 C 1.38233 * 120.00320 * 0.39947 * 21 20 19 23 23 C 1.38242 * 120.00072 * 359.85688 * 22 21 20 24 24 C 1.38232 * 120.00114 * 262.73359 * 19 9 7 25 25 H 0.96992 * 120.00417 * 174.79886 * 1 2 3 26 26 H 1.07994 * 121.04117 * 359.97024 * 13 12 11 27 27 H 1.07996 * 120.99069 * 179.97438 * 14 13 12 28 28 H 1.07992 * 120.00157 * 0.02562 * 20 19 9 29 29 H 1.08003 * 119.99751 * 180.23201 * 21 20 19 30 30 H 1.07998 * 120.00216 * 179.82931 * 22 21 20 31 31 H 1.07998 * 119.99829 * 179.97438 * 23 22 21 32 32 H 1.07999 * 119.99920 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0831 -1.1949 0.0529 9 6 1.2528 -2.4981 -0.0756 10 1 0.2618 -2.3718 0.3604 11 8 1.9672 -3.5020 0.6482 12 6 1.6681 -3.6429 1.9645 13 6 2.3250 -4.6019 2.7318 14 6 1.9844 -4.7063 4.0713 15 6 1.0103 -3.8482 4.5654 16 17 0.5430 -3.9339 6.2351 17 7 0.4407 -2.9681 3.7649 18 7 0.7574 -2.8643 2.5254 19 6 1.1179 -2.9179 -1.5166 20 6 2.1583 -3.5765 -2.1449 21 6 2.0330 -3.9651 -3.4656 22 6 0.8705 -3.6878 -4.1604 23 6 -0.1678 -3.0245 -3.5336 24 6 -0.0440 -2.6394 -2.2118 25 1 -0.4850 -0.8365 -0.0761 26 1 3.0761 -5.2443 2.2966 27 1 2.4622 -5.4330 4.7116 28 1 3.0676 -3.7905 -1.6030 29 1 2.8444 -4.4830 -3.9554 30 1 0.7737 -3.9890 -5.1930 31 1 -1.0758 -2.8075 -4.0766 32 1 -0.8553 -2.1212 -1.7221 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226459683.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = 21.330438 kcal Electronic energy + Delta-G solvation = -20006.746159 eV Core-core repulsion = 16765.443699 eV Total energy + Delta-G solvation = -3241.302460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26670 -40.40994 -39.02449 -37.81171 -35.51685 -34.29110 -32.88013 -31.85871 -31.66831 -28.46727 -26.14921 -25.41728 -24.67999 -23.33748 -22.21339 -19.97774 -18.92033 -18.81028 -18.15551 -17.52598 -16.94657 -16.11330 -15.94176 -15.74267 -15.39329 -15.22712 -14.90001 -14.59284 -14.28010 -14.11107 -13.74611 -13.43236 -12.84503 -12.77826 -12.69529 -12.59404 -12.38560 -12.04525 -11.96623 -11.73112 -11.38456 -11.01863 -10.64616 -10.56330 -9.96691 -9.76101 -9.47578 -8.69560 -6.47020 -0.33256 -0.17346 0.52723 0.56155 0.56944 1.46035 1.53384 1.72531 2.05620 2.36624 2.48936 2.93617 3.10470 3.15183 3.40935 3.73683 3.81736 4.06869 4.16899 4.21523 4.31711 4.37922 4.58334 4.69787 4.75989 4.86149 4.93955 5.15900 5.22716 5.62950 5.63660 5.68560 5.81242 5.87229 6.19743 6.34989 6.45443 7.32361 7.52688 8.65773 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.005499 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.577861 B = 5090.773352 C = 6308.910650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.007 4.007 3 Si 1.107 2.893 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.614 4.614 8 H 0.046 0.954 9 C 0.232 3.768 10 H 0.039 0.961 11 O -0.306 6.306 12 C 0.261 3.739 13 C -0.122 4.122 14 C -0.055 4.055 15 C 0.062 3.938 16 Cl 0.002 6.998 17 N -0.237 5.237 18 N -0.309 5.309 19 C -0.073 4.073 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.139 4.139 25 H 0.262 0.738 26 H 0.200 0.800 27 H 0.216 0.784 28 H 0.116 0.884 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -12.458 2.207 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.209 4.209 3 Si 0.929 3.071 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.651 4.651 8 H 0.064 0.936 9 C 0.177 3.823 10 H 0.056 0.944 11 O -0.210 6.210 12 C 0.075 3.925 13 C -0.151 4.151 14 C -0.083 4.083 15 C -0.114 4.114 16 Cl 0.030 6.970 17 N -0.081 5.081 18 N -0.165 5.165 19 C -0.073 4.073 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.150 4.150 23 C -0.139 4.139 24 C -0.158 4.158 25 H 0.074 0.926 26 H 0.217 0.783 27 H 0.232 0.768 28 H 0.134 0.866 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.159 0.841 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.028 -9.743 1.970 10.726 hybrid contribution 0.616 -2.088 0.538 2.242 sum 4.644 -11.832 2.508 12.955 Atomic orbital electron populations 1.70870 1.07521 1.30671 1.45154 1.27066 0.96482 1.05665 0.91737 0.83074 0.74431 0.71883 0.77726 1.20368 1.20356 1.19152 1.22150 0.94267 0.91820 1.56853 0.93574 1.19058 0.93103 0.84605 0.85530 0.94369 1.86123 1.62088 1.56747 1.15994 1.22087 0.91333 0.91513 0.87586 1.22048 1.01693 0.98459 0.92934 1.22518 0.93488 0.97583 0.94734 1.23698 0.98766 0.98120 0.90785 1.98386 1.91860 1.97241 1.09543 1.72631 1.21029 1.16729 0.97717 1.73324 1.16799 1.22635 1.03789 1.20225 0.94550 0.96315 0.96230 1.20996 0.97931 0.99165 0.95895 1.21446 0.98889 0.99945 0.93389 1.21428 0.93129 0.99432 1.01021 1.21319 1.00435 0.98736 0.93443 1.20944 0.96975 1.01405 0.96463 0.92620 0.78309 0.76753 0.86629 0.83063 0.82611 0.84101 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.13 13.62 21.45 0.29 -54.84 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 3 Si 1.11 51.42 29.90 68.60 2.05 53.47 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.61 -34.89 8.63 25.60 0.22 -34.66 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.63 16 9 C 0.23 12.08 1.99 29.10 0.06 12.14 16 10 H 0.04 2.23 5.12 -2.39 -0.01 2.21 16 11 O -0.31 -14.23 9.00 -90.37 -0.81 -15.04 16 12 C 0.26 11.02 7.53 84.87 0.64 11.66 16 13 C -0.12 -3.46 10.16 22.61 0.23 -3.23 16 14 C -0.06 -1.30 10.00 22.52 0.23 -1.08 16 15 C 0.06 1.94 7.36 84.84 0.62 2.56 16 16 Cl 0.00 0.05 29.13 -2.72 -0.08 -0.03 16 17 N -0.24 -10.08 11.48 -49.85 -0.57 -10.65 16 18 N -0.31 -14.85 9.84 -170.23 -1.67 -16.52 16 19 C -0.07 -3.39 4.97 -19.86 -0.10 -3.49 16 20 C -0.12 -4.84 9.36 22.27 0.21 -4.64 16 21 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 22 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 23 C -0.12 -4.21 10.05 22.27 0.22 -3.98 16 24 C -0.14 -6.15 9.59 22.27 0.21 -5.94 16 25 H 0.26 16.14 5.42 -92.71 -0.50 15.64 16 26 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.22 2.54 8.06 -2.91 -0.02 2.51 16 28 H 0.12 4.50 7.70 -2.91 -0.02 4.48 16 29 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.09 4.52 7.03 -2.91 -0.02 4.50 16 Total: -1.00 -73.47 302.85 4.08 -69.38 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.42 Total: 12.03 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 3.45 Total: -37.80 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.95 Total: -82.01 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.81 Total: -15.04 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -73.47 4.08 -69.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226459683.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.715 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds