Wall clock time and date at job start Tue Mar 31 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35921 * 117.00175 * 2 1 4 4 C 1.38764 * 120.03463 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.06715 * 180.02562 * 4 3 2 6 6 C 1.38215 * 120.11989 * 359.97438 * 5 4 3 7 7 C 1.38727 * 120.06560 * 0.03671 * 6 5 4 8 8 O 1.35923 * 120.03135 * 180.02562 * 7 6 5 9 9 C 1.42890 * 117.00075 * 356.74125 * 8 7 6 10 10 H 1.09000 * 109.47476 * 26.89544 * 9 8 7 11 11 C 1.50702 * 109.47385 * 146.90023 * 9 8 7 12 12 H 1.08006 * 119.99569 * 0.02562 * 11 9 8 13 13 C 1.37872 * 120.00253 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00150 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99831 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47171 * 60.00233 * 15 13 11 17 17 H 1.48505 * 109.46980 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47337 * 300.00109 * 15 13 11 19 19 C 1.53003 * 109.47278 * 266.89780 * 9 8 7 20 20 Cl 1.80306 * 109.46852 * 64.99966 * 19 9 8 21 21 C 1.38691 * 120.02690 * 180.02562 * 3 2 1 22 22 Cl 1.73599 * 120.06558 * 359.70875 * 21 3 2 23 23 H 1.08997 * 109.47162 * 59.99296 * 1 2 3 24 24 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46323 * 299.99740 * 1 2 3 26 26 H 1.08007 * 119.96629 * 0.03827 * 4 3 2 27 27 H 1.07997 * 119.94177 * 179.97438 * 5 4 3 28 28 H 1.07995 * 119.96587 * 180.02562 * 6 5 4 29 29 H 0.97003 * 120.00107 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.47513 * 184.99849 * 19 9 8 31 31 H 1.08996 * 109.47516 * 305.00519 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2911 2.3753 -0.0005 5 6 1.9177 3.6067 -0.0011 6 6 3.2978 3.6826 -0.0005 7 6 4.0577 2.5220 -0.0002 8 8 5.4148 2.5976 0.0008 9 6 5.9920 3.9028 -0.0708 10 1 5.2986 4.6304 0.3509 11 6 7.2807 3.9258 0.7101 12 1 7.6248 3.0327 1.2107 13 6 8.0210 5.0865 0.7846 14 7 7.6023 6.1738 0.1747 15 14 9.6180 5.1151 1.7532 16 1 10.5627 4.1233 1.1795 17 1 10.2179 6.4715 1.6787 18 1 9.3427 4.7734 3.1720 19 6 6.2751 4.2558 -1.5324 20 17 4.7184 4.3723 -2.4348 21 6 3.4311 1.2842 -0.0005 22 17 4.3789 -0.1702 0.0064 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 0.2125 2.3188 -0.0003 27 1 1.3281 4.5115 -0.0019 28 1 3.7849 4.6465 -0.0005 29 1 8.1230 6.9905 0.2275 30 1 6.7957 5.2122 -1.5810 31 1 6.8970 3.4804 -1.9796 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226630940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:14 Heat of formation + Delta-G solvation = -81.026892 kcal Electronic energy + Delta-G solvation = -18861.012180 eV Core-core repulsion = 15580.545572 eV Total energy + Delta-G solvation = -3280.466608 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.026 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.38632 -40.03758 -37.64934 -37.12219 -36.53737 -35.32115 -32.01930 -31.05599 -30.15399 -28.05986 -27.27154 -24.33140 -23.56954 -21.98670 -19.68886 -18.86467 -17.66971 -17.40364 -17.19706 -16.78058 -16.50869 -16.03136 -15.53544 -15.03632 -14.93202 -14.53092 -14.07317 -13.76477 -13.55041 -13.16985 -13.02434 -12.86293 -12.79770 -12.49988 -12.41751 -12.16022 -11.93403 -11.90478 -11.67066 -11.41423 -11.15050 -10.87779 -10.56230 -9.26970 -8.91317 -8.36834 -6.51792 0.26555 0.45495 1.34255 1.41430 1.44581 1.53252 1.60989 2.01994 2.34859 2.70225 2.87850 3.00034 3.96105 4.00703 4.15042 4.20112 4.34542 4.41946 4.46847 4.47178 4.60057 4.78953 4.85907 5.11186 5.17977 5.34418 5.47805 5.50981 5.60835 5.84258 6.35607 6.44372 6.75884 7.19976 8.69640 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.021646 B = 0.005472 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.249110 B = 5115.565286 C = 5690.704312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.164 3.836 4 C -0.236 4.236 5 C -0.035 4.035 6 C -0.233 4.233 7 C 0.173 3.827 8 O -0.314 6.314 9 C 0.211 3.789 10 H 0.040 0.960 11 C -0.549 4.549 12 H 0.063 0.937 13 C 0.032 3.968 14 N -0.906 5.906 15 Si 0.974 3.026 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.271 1.271 19 C -0.026 4.026 20 Cl -0.219 7.219 21 C -0.140 4.140 22 Cl -0.068 7.068 23 H 0.069 0.931 24 H 0.121 0.879 25 H 0.071 0.929 26 H 0.171 0.829 27 H 0.160 0.840 28 H 0.130 0.870 29 H 0.277 0.723 30 H 0.120 0.880 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.989 -5.440 -0.850 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.117 3.883 4 C -0.255 4.255 5 C -0.053 4.053 6 C -0.252 4.252 7 C 0.125 3.875 8 O -0.227 6.227 9 C 0.156 3.844 10 H 0.058 0.942 11 C -0.586 4.586 12 H 0.082 0.918 13 C -0.170 4.170 14 N -0.543 5.543 15 Si 0.798 3.202 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.196 1.196 19 C -0.089 4.089 20 Cl -0.193 7.193 21 C -0.168 4.168 22 Cl -0.039 7.039 23 H 0.088 0.912 24 H 0.139 0.861 25 H 0.089 0.911 26 H 0.188 0.812 27 H 0.177 0.823 28 H 0.148 0.852 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.735 -5.711 -0.951 13.990 hybrid contribution 0.913 0.351 0.232 1.005 sum -11.822 -5.360 -0.719 13.000 Atomic orbital electron populations 1.23448 0.75666 1.05826 1.02792 1.86110 1.24016 1.25503 1.88071 1.18345 0.88891 0.86246 0.94771 1.21315 1.01360 0.90298 1.12494 1.21098 0.92687 0.98722 0.92753 1.21377 0.95719 0.97298 1.10807 1.18720 0.84266 0.92292 0.92209 1.86157 1.15978 1.34383 1.86204 1.20374 0.93791 0.78609 0.91596 0.94247 1.21175 1.06414 0.98147 1.32872 0.91829 1.25636 1.01244 0.94157 0.95981 1.69855 1.40146 1.01728 1.42611 0.85348 0.78247 0.77725 0.78901 1.19440 1.19860 1.19645 1.25412 0.84561 1.05732 0.93220 1.98633 1.41866 1.99083 1.79757 1.19422 0.89691 0.86280 1.21414 1.98295 1.72591 1.35453 1.97572 0.91197 0.86128 0.91060 0.81199 0.82261 0.85223 0.91389 0.86179 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.32 -8.85 9.95 -92.66 -0.92 -9.78 16 3 C 0.16 5.19 6.68 22.50 0.15 5.34 16 4 C -0.24 -6.10 9.04 22.38 0.20 -5.90 16 5 C -0.03 -0.99 10.04 22.25 0.22 -0.77 16 6 C -0.23 -8.73 7.04 22.38 0.16 -8.58 16 7 C 0.17 7.28 5.96 22.51 0.13 7.42 16 8 O -0.31 -15.10 9.19 -92.68 -0.85 -15.95 16 9 C 0.21 10.44 2.19 29.85 0.07 10.51 16 10 H 0.04 2.05 5.39 -2.39 -0.01 2.04 16 11 C -0.55 -29.11 8.89 25.60 0.23 -28.88 16 12 H 0.06 3.46 7.81 -2.91 -0.02 3.43 16 13 C 0.03 1.59 5.29 84.65 0.45 2.04 16 14 N -0.91 -46.65 11.29 21.44 0.24 -46.41 16 15 Si 0.97 40.59 29.54 68.60 2.03 42.61 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 19 C -0.03 -1.22 6.17 71.98 0.44 -0.77 16 20 Cl -0.22 -8.92 25.60 -2.72 -0.07 -8.99 16 21 C -0.14 -5.42 6.34 22.50 0.14 -5.28 16 22 Cl -0.07 -2.60 28.05 -2.72 -0.08 -2.67 16 23 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 24 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 26 H 0.17 2.91 6.29 -2.91 -0.02 2.89 16 27 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.13 5.27 5.09 -2.91 -0.01 5.26 16 29 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.12 5.90 5.95 -2.39 -0.01 5.88 16 31 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -58.74 290.91 4.83 -53.92 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.17 Total: 10.77 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 3.31 Total: -23.50 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.24 Total: -46.41 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -1.77 Total: -25.73 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 17 Polarization: -11.51 SS G_CDS: -0.15 Total: -11.66 kcal Total: -58.74 4.83 -53.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226630940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.108 kcal (2) G-P(sol) polarization free energy of solvation -58.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds