Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48496 * 109.46960 * 94.98556 * 3 2 1 5 5 H 1.48500 * 109.47146 * 214.98595 * 3 2 1 6 6 H 1.48499 * 109.47152 * 334.98487 * 3 2 1 7 7 C 1.37881 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99802 * 5.70089 * 7 2 1 9 9 C 1.50692 * 120.00139 * 185.69809 * 7 2 1 10 10 H 1.09004 * 109.47479 * 4.73607 * 9 7 2 11 11 O 1.42900 * 109.47379 * 124.73674 * 9 7 2 12 12 C 1.35483 * 117.00043 * 270.00570 * 11 9 7 13 13 N 1.32304 * 119.17796 * 359.72090 * 12 11 9 14 14 C 1.32307 * 120.77220 * 179.72387 * 13 12 11 15 15 C 1.38694 * 119.15880 * 0.54091 * 14 13 12 16 16 Cl 1.73596 * 120.75183 * 179.75165 * 15 14 13 17 17 C 1.38690 * 118.49539 * 359.73900 * 15 14 13 18 18 N 1.32304 * 119.18458 * 179.97438 * 12 11 9 19 19 C 1.50704 * 109.47424 * 244.73550 * 9 7 2 20 20 C 1.38228 * 119.99773 * 278.67903 * 19 9 7 21 21 C 1.38238 * 120.00007 * 179.80517 * 20 19 9 22 22 C 1.38242 * 119.99630 * 0.39856 * 21 20 19 23 23 C 1.38230 * 119.99743 * 359.85326 * 22 21 20 24 24 C 1.38233 * 119.99685 * 98.94697 * 19 9 7 25 25 H 0.97007 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.42208 * 180.28133 * 14 13 12 27 27 H 1.07993 * 120.42324 * 179.97438 * 17 15 14 28 28 H 1.08004 * 120.00465 * 359.97438 * 20 19 9 29 29 H 1.07996 * 120.00459 * 180.22943 * 21 20 19 30 30 H 1.07999 * 119.99385 * 179.83344 * 22 21 20 31 31 H 1.08008 * 119.99882 * 179.97438 * 23 22 21 32 32 H 1.07992 * 120.00547 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6019 1.9856 1.3947 5 1 3.4900 1.4729 -0.8028 6 1 1.3978 2.6808 -0.5920 7 6 2.0046 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0939 9 6 3.5059 -1.1973 0.1290 10 1 3.8584 -0.1795 0.2960 11 8 3.8870 -2.0205 1.2332 12 6 3.9896 -1.4185 2.4426 13 7 3.7427 -0.1225 2.5410 14 6 3.8282 0.4962 3.7074 15 6 4.1925 -0.2291 4.8320 16 17 4.3236 0.5422 6.3817 17 6 4.4494 -1.5846 4.6905 18 7 4.3391 -2.1403 3.4949 19 6 4.1182 -1.7397 -1.1367 20 6 4.1930 -3.1051 -1.3383 21 6 4.7510 -3.6026 -2.5011 22 6 5.2418 -2.7346 -3.4586 23 6 5.1717 -1.3692 -3.2545 24 6 4.6101 -0.8717 -2.0935 25 1 -0.4851 0.8401 0.0004 26 1 3.6210 1.5536 3.7821 27 1 4.7358 -2.1791 5.5454 28 1 3.8130 -3.7834 -0.5886 29 1 4.8061 -4.6693 -2.6603 30 1 5.6802 -3.1234 -4.3658 31 1 5.5555 -0.6910 -4.0024 32 1 4.5553 0.1950 -1.9343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226661088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = 42.205660 kcal Electronic energy + Delta-G solvation = -20122.825912 eV Core-core repulsion = 16882.428669 eV Total energy + Delta-G solvation = -3240.397243 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83208 -38.87176 -37.40099 -36.46145 -33.63144 -33.11045 -31.55124 -30.43257 -30.20772 -27.45279 -24.63735 -23.89519 -22.76577 -21.98794 -20.43664 -18.13022 -17.76341 -17.29815 -16.30826 -16.16933 -15.42190 -14.93497 -14.74231 -14.34346 -13.95249 -13.59128 -13.26488 -12.96793 -12.89641 -12.77470 -12.25170 -11.80704 -11.59127 -11.30053 -11.26363 -11.14328 -10.86766 -10.70571 -10.55031 -10.05003 -9.86900 -9.57672 -8.89236 -8.75052 -8.38997 -8.34035 -7.98605 -6.39678 -4.47114 1.15753 1.25121 1.93272 1.98332 2.08965 3.15504 3.23344 3.25818 3.31816 4.02879 4.21328 4.34519 4.43324 4.57949 4.90532 5.04951 5.06270 5.42484 5.46666 5.59463 5.78209 5.81762 6.07259 6.10909 6.29816 6.31757 6.55859 6.65072 6.97674 7.01074 7.05418 7.19809 7.30836 7.58273 7.78337 8.14672 8.46308 8.70612 9.20170 10.69816 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.005709 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.529388 B = 4903.273348 C = 5835.466426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.092 3.908 3 Si 0.883 3.117 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.292 1.292 7 C -0.525 4.525 8 H 0.083 0.917 9 C 0.210 3.790 10 H 0.069 0.931 11 O -0.288 6.288 12 C 0.533 3.467 13 N -0.540 5.540 14 C 0.206 3.794 15 C -0.212 4.212 16 Cl -0.058 7.058 17 C 0.203 3.797 18 N -0.525 5.525 19 C -0.039 4.039 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.122 4.122 24 C -0.124 4.124 25 H 0.271 0.729 26 H 0.170 0.830 27 H 0.176 0.824 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.095 0.752 4.975 11.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.115 4.115 3 Si 0.710 3.290 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.218 1.218 7 C -0.561 4.561 8 H 0.101 0.899 9 C 0.157 3.843 10 H 0.087 0.913 11 O -0.188 6.188 12 C 0.234 3.766 13 N -0.270 5.270 14 C 0.038 3.962 15 C -0.245 4.245 16 Cl -0.030 7.030 17 C 0.035 3.965 18 N -0.253 5.253 19 C -0.039 4.039 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.142 4.142 25 H 0.081 0.919 26 H 0.187 0.813 27 H 0.193 0.807 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.868 0.161 3.933 10.625 hybrid contribution 0.072 1.527 0.834 1.741 sum 9.941 1.687 4.768 11.153 Atomic orbital electron populations 1.69903 1.06603 1.28005 1.45905 1.25084 0.94769 0.99516 0.92178 0.86790 0.79577 0.82488 0.80183 1.17673 1.19078 1.21849 1.21052 0.87645 0.95722 1.51672 0.89884 1.19574 0.95793 0.90696 0.78246 0.91335 1.86257 1.79425 1.40545 1.12569 1.20947 0.84292 0.83809 0.87527 1.68371 1.20703 1.10956 1.26959 1.22952 0.87605 1.00371 0.85275 1.22442 1.15927 0.96514 0.89582 1.98339 1.97049 1.80994 1.26632 1.22966 0.89202 0.90091 0.94273 1.67815 1.20485 1.38946 0.98012 1.19970 0.93887 0.93737 0.96353 1.20987 0.98702 0.95176 0.97158 1.21063 0.99642 0.99106 0.94387 1.20943 1.02277 0.93570 0.99212 1.20945 1.00573 0.95318 0.97171 1.20976 0.99117 0.99632 0.94449 0.91879 0.81261 0.80699 0.85935 0.86749 0.86956 0.86736 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.30 13.96 55.43 0.77 -24.52 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.44 16 3 Si 0.88 20.62 25.86 -169.99 -4.40 16.22 16 4 H -0.25 -5.57 6.83 56.52 0.39 -5.18 16 5 H -0.27 -5.88 5.36 56.52 0.30 -5.57 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.41 9.17 -34.44 -0.32 -14.73 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 9 C 0.21 5.03 2.00 -29.04 -0.06 4.97 16 10 H 0.07 1.64 3.59 -51.93 -0.19 1.45 16 11 O -0.29 -6.77 9.10 -18.14 -0.17 -6.94 16 12 C 0.53 11.51 8.45 -91.28 -0.77 10.74 16 13 N -0.54 -11.22 7.28 -14.71 -0.11 -11.33 16 14 C 0.21 3.43 11.12 -17.18 -0.19 3.24 16 15 C -0.21 -3.05 6.36 -39.25 -0.25 -3.30 16 16 Cl -0.06 -0.68 29.02 -51.86 -1.50 -2.18 16 17 C 0.20 2.99 11.12 -17.18 -0.19 2.80 16 18 N -0.53 -9.97 10.46 -14.71 -0.15 -10.13 16 19 C -0.04 -0.85 4.96 -104.63 -0.52 -1.37 16 20 C -0.10 -2.04 9.36 -39.58 -0.37 -2.41 16 21 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 22 C -0.14 -2.24 10.05 -39.58 -0.40 -2.64 16 23 C -0.12 -2.04 10.05 -39.59 -0.40 -2.44 16 24 C -0.12 -2.45 9.67 -39.58 -0.38 -2.83 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 26 H 0.17 2.38 8.06 -52.49 -0.42 1.95 16 27 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.12 2.46 7.74 -52.48 -0.41 2.06 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.12 2.31 6.58 -52.49 -0.35 1.96 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -30.14 297.36 -8.14 -38.27 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -2.72 Total: 4.14 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -4.34 Total: -8.02 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.51 Total: -45.98 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.17 Total: -6.94 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.40 Total: 16.22 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.14 -8.14 -38.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226661088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.480 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds