Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48496 * 109.46960 * 94.98556 * 3 2 1 5 5 H 1.48500 * 109.47146 * 214.98595 * 3 2 1 6 6 H 1.48499 * 109.47152 * 334.98487 * 3 2 1 7 7 C 1.37881 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99802 * 5.70089 * 7 2 1 9 9 C 1.50692 * 120.00139 * 185.69809 * 7 2 1 10 10 H 1.09004 * 109.47479 * 4.73607 * 9 7 2 11 11 O 1.42900 * 109.47379 * 124.73674 * 9 7 2 12 12 C 1.35483 * 117.00043 * 270.00570 * 11 9 7 13 13 N 1.32304 * 119.17796 * 359.72090 * 12 11 9 14 14 C 1.32307 * 120.77220 * 179.72387 * 13 12 11 15 15 C 1.38694 * 119.15880 * 0.54091 * 14 13 12 16 16 Cl 1.73596 * 120.75183 * 179.75165 * 15 14 13 17 17 C 1.38690 * 118.49539 * 359.73900 * 15 14 13 18 18 N 1.32304 * 119.18458 * 179.97438 * 12 11 9 19 19 C 1.50704 * 109.47424 * 244.73550 * 9 7 2 20 20 C 1.38228 * 119.99773 * 278.67903 * 19 9 7 21 21 C 1.38238 * 120.00007 * 179.80517 * 20 19 9 22 22 C 1.38242 * 119.99630 * 0.39856 * 21 20 19 23 23 C 1.38230 * 119.99743 * 359.85326 * 22 21 20 24 24 C 1.38233 * 119.99685 * 98.94697 * 19 9 7 25 25 H 0.97007 * 120.00378 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.42208 * 180.28133 * 14 13 12 27 27 H 1.07993 * 120.42324 * 179.97438 * 17 15 14 28 28 H 1.08004 * 120.00465 * 359.97438 * 20 19 9 29 29 H 1.07996 * 120.00459 * 180.22943 * 21 20 19 30 30 H 1.07999 * 119.99385 * 179.83344 * 22 21 20 31 31 H 1.08008 * 119.99882 * 179.97438 * 23 22 21 32 32 H 1.07992 * 120.00547 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6019 1.9856 1.3947 5 1 3.4900 1.4729 -0.8028 6 1 1.3978 2.6808 -0.5920 7 6 2.0046 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0939 9 6 3.5059 -1.1973 0.1290 10 1 3.8584 -0.1795 0.2960 11 8 3.8870 -2.0205 1.2332 12 6 3.9896 -1.4185 2.4426 13 7 3.7427 -0.1225 2.5410 14 6 3.8282 0.4962 3.7074 15 6 4.1925 -0.2291 4.8320 16 17 4.3236 0.5422 6.3817 17 6 4.4494 -1.5846 4.6905 18 7 4.3391 -2.1403 3.4949 19 6 4.1182 -1.7397 -1.1367 20 6 4.1930 -3.1051 -1.3383 21 6 4.7510 -3.6026 -2.5011 22 6 5.2418 -2.7346 -3.4586 23 6 5.1717 -1.3692 -3.2545 24 6 4.6101 -0.8717 -2.0935 25 1 -0.4851 0.8401 0.0004 26 1 3.6210 1.5536 3.7821 27 1 4.7358 -2.1791 5.5454 28 1 3.8130 -3.7834 -0.5886 29 1 4.8061 -4.6693 -2.6603 30 1 5.6802 -3.1234 -4.3658 31 1 5.5555 -0.6910 -4.0024 32 1 4.5553 0.1950 -1.9343 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226661088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = 21.672666 kcal Electronic energy + Delta-G solvation = -20123.716290 eV Core-core repulsion = 16882.428669 eV Total energy + Delta-G solvation = -3241.287620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.26804 -40.36983 -38.92204 -37.61750 -35.19391 -34.91229 -33.17761 -31.83177 -31.59974 -29.23622 -26.06040 -25.46986 -24.34134 -23.39812 -21.97191 -19.69968 -19.46882 -19.03677 -17.64005 -17.51697 -17.02721 -16.47187 -16.16205 -15.99547 -15.39348 -14.94207 -14.79695 -14.69724 -14.49925 -14.23287 -13.68235 -13.44231 -13.04140 -12.83133 -12.64616 -12.43289 -12.36787 -12.16173 -12.03532 -11.88245 -11.54365 -11.35192 -10.86763 -10.20911 -9.77635 -9.74326 -9.51277 -8.48630 -6.62037 -0.21890 -0.04879 0.50486 0.57029 0.90190 1.29979 1.38790 1.43774 1.73680 2.26926 2.60968 2.84920 3.03525 3.04625 3.38897 3.57877 3.81111 4.04684 4.17726 4.25159 4.34774 4.42731 4.58246 4.73649 4.78122 4.95100 5.12039 5.22648 5.24515 5.56191 5.62709 5.65601 5.81741 5.98312 6.18669 6.31141 6.48209 6.98277 7.12518 8.65624 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.005709 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.529388 B = 4903.273348 C = 5835.466426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.044 3.956 3 Si 0.937 3.063 4 H -0.233 1.233 5 H -0.249 1.249 6 H -0.289 1.289 7 C -0.534 4.534 8 H 0.030 0.970 9 C 0.225 3.775 10 H 0.068 0.932 11 O -0.308 6.308 12 C 0.504 3.496 13 N -0.571 5.571 14 C 0.192 3.808 15 C -0.192 4.192 16 Cl -0.022 7.022 17 C 0.205 3.795 18 N -0.542 5.542 19 C -0.076 4.076 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.141 4.141 25 H 0.274 0.726 26 H 0.195 0.805 27 H 0.220 0.780 28 H 0.104 0.896 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.773 1.634 5.146 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.158 4.158 3 Si 0.759 3.241 4 H -0.156 1.156 5 H -0.173 1.173 6 H -0.216 1.216 7 C -0.571 4.571 8 H 0.048 0.952 9 C 0.171 3.829 10 H 0.085 0.915 11 O -0.209 6.209 12 C 0.204 3.796 13 N -0.301 5.301 14 C 0.026 3.974 15 C -0.224 4.224 16 Cl 0.007 6.993 17 C 0.039 3.961 18 N -0.270 5.270 19 C -0.077 4.077 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.159 4.159 25 H 0.083 0.917 26 H 0.212 0.788 27 H 0.237 0.763 28 H 0.122 0.878 29 H 0.164 0.836 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.569 1.048 4.154 13.279 hybrid contribution -0.670 1.144 0.960 1.637 sum 11.899 2.192 5.115 13.135 Atomic orbital electron populations 1.70034 1.08412 1.28991 1.48551 1.25895 0.95388 1.03065 0.91491 0.85939 0.78815 0.77758 0.81568 1.15586 1.17300 1.21611 1.21083 0.90009 0.93792 1.52189 0.95203 1.19291 0.93357 0.90975 0.79272 0.91463 1.86129 1.80369 1.40728 1.13636 1.21071 0.86425 0.84648 0.87428 1.68261 1.21798 1.10818 1.29238 1.23439 0.87516 1.01561 0.84908 1.22460 1.13072 0.96356 0.90551 1.98363 1.96703 1.80356 1.23898 1.23714 0.87727 0.90827 0.93853 1.67809 1.20940 1.39455 0.98748 1.20033 0.96430 0.95026 0.96182 1.21008 1.00211 0.94478 0.98562 1.21432 0.98173 1.01153 0.93115 1.21476 1.00236 0.92971 0.99954 1.21392 0.98934 0.96649 0.96440 1.21126 1.00069 0.99320 0.95414 0.91711 0.78789 0.76342 0.87801 0.83632 0.82452 0.82979 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.68 13.96 21.45 0.30 -56.38 16 2 C 0.04 2.53 5.47 84.66 0.46 2.99 16 3 Si 0.94 43.24 25.86 68.60 1.77 45.01 16 4 H -0.23 -9.86 6.83 99.48 0.68 -9.18 16 5 H -0.25 -10.68 5.36 99.48 0.53 -10.15 16 6 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.53 -31.41 9.17 25.60 0.23 -31.17 16 8 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 9 C 0.23 11.31 2.00 29.10 0.06 11.37 16 10 H 0.07 3.31 3.59 -2.39 -0.01 3.30 16 11 O -0.31 -15.32 9.10 -87.82 -0.80 -16.12 16 12 C 0.50 22.41 8.45 180.58 1.53 23.93 16 13 N -0.57 -23.86 7.28 -313.39 -2.28 -26.14 16 14 C 0.19 6.12 11.12 84.73 0.94 7.06 16 15 C -0.19 -5.09 6.36 22.49 0.14 -4.95 16 16 Cl -0.02 -0.43 29.02 -2.72 -0.08 -0.51 16 17 C 0.21 5.66 11.12 84.73 0.94 6.61 16 18 N -0.54 -20.62 10.46 -313.40 -3.28 -23.90 16 19 C -0.08 -3.44 4.96 -19.87 -0.10 -3.53 16 20 C -0.12 -5.13 9.36 22.27 0.21 -4.92 16 21 C -0.12 -3.87 10.05 22.27 0.22 -3.65 16 22 C -0.13 -3.58 10.05 22.27 0.22 -3.36 16 23 C -0.12 -3.55 10.05 22.27 0.22 -3.33 16 24 C -0.14 -5.52 9.67 22.27 0.22 -5.30 16 25 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 26 H 0.20 5.00 8.06 -2.91 -0.02 4.97 16 27 H 0.22 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.10 4.52 7.74 -2.91 -0.02 4.50 16 29 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.12 4.44 6.58 -2.91 -0.02 4.42 16 Total: -1.00 -71.99 297.36 1.90 -70.09 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.96 Total: 16.19 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.31 Total: -8.25 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -5.26 Total: -106.41 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.80 Total: -16.12 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.77 Total: 45.01 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -71.99 1.90 -70.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226661088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.762 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds